genome.fa.s2799.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002799.1 Hibiscus syriacus cultivar Beakdansim tig00005762_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63412

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81--119	20	1.9	21	89	5	62	41	10	12	35	1.77
2975--3024	21	2.4	21	86	0	64	40	12	18	30	1.86
9632--9704	35	2.1	35	94	0	128	27	15	28	28	1.96
14431--14518	29	3.1	29	90	6	128	36	17	3	43	1.66
15175--15236	26	2.3	26	84	13	74	35	8	16	40	1.78
15393--15438	20	2.3	20	85	7	58	43	0	8	47	1.34
16163--16193	16	1.9	16	93	0	53	58	6	3	32	1.40
18741--19043	73	4.1	70	86	7	311	42	7	5	45	1.54
18780--19054	37	7.4	37	86	8	341	43	6	4	46	1.47
18780--19054	76	3.7	75	88	6	384	43	6	4	46	1.47
18996--19077	29	2.8	30	83	12	107	46	3	2	47	1.33
24421--26949	58	43.7	58	89	0	3735	41	14	8	36	1.76
27082--27191	45	2.7	40	77	16	125	40	16	9	34	1.80
27097--27215	45	2.6	44	84	7	150	39	15	9	35	1.80
29744--29782	19	2.1	19	95	0	69	28	12	15	43	1.83
40768--41184	211	2.0	208	95	4	750	29	18	19	31	1.96
42000--42041	21	2.0	21	90	0	66	30	11	7	50	1.66
42030--42137	32	3.4	33	86	6	152	32	8	13	45	1.74
42198--42231	18	1.9	18	88	5	52	41	11	11	35	1.78
42179--42234	15	3.6	15	74	9	58	33	12	12	41	1.81
43979--44005	14	1.9	14	100	0	54	44	0	7	48	1.31
44462--44571	35	3.2	35	85	2	152	42	22	0	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46614--46719	35	3.0	35	87	1	140	32	0	23	43	1.60
46636--46725	35	2.6	35	90	0	144	31	1	24	43	1.62
51194--51236	16	2.7	16	88	0	68	30	6	32	30	1.84
51232--51464	119	1.9	121	84	6	314	47	15	13	23	1.81
51446--51478	5	6.8	5	93	6	59	81	0	0	18	0.68
51447--51477	9	3.3	9	95	4	53	80	0	0	19	0.71
51446--51478	14	2.3	15	94	5	59	81	0	0	18	0.68
51326--51584	131	2.0	128	83	8	326	48	13	14	23	1.80
51597--51652	29	1.9	29	100	0	112	51	3	14	30	1.59
51600--51663	29	2.2	29	88	5	94	56	3	10	29	1.49
52756--53356	277	2.2	278	84	1	774	24	15	27	31	1.96
52756--53402	139	4.7	139	82	3	674	24	16	27	31	1.96
53747--54107	154	2.3	153	77	8	383	42	10	16	31	1.82
55779--55839	26	2.4	26	86	2	79	45	1	6	45	1.39
56731--56777	11	4.4	11	79	12	53	0	8	12	78	0.95
56743--56797	22	2.6	21	80	11	58	1	9	9	80	0.99
56749--56808	15	4.1	14	74	19	52	1	11	8	78	1.03
60590--60626	16	2.3	17	86	13	60	45	5	10	37	1.62
60672--60734	16	4.1	16	79	8	76	33	6	30	30	1.82
60699--60727	14	2.1	14	100	0	58	37	6	27	27	1.82
60672--60734	30	2.0	32	84	6	85	33	6	30	30	1.82
60713--60948	120	2.0	121	83	4	298	47	14	14	23	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60931--60971	5	8.8	5	84	15	61	80	0	0	19	0.71
60919--60971	27	2.0	27	88	7	81	77	0	0	22	0.77
60931--60971	19	2.2	18	91	4	64	80	0	0	19	0.71
60920--60971	13	3.9	13	87	9	70	76	0	0	23	0.78
61094--61149	29	1.9	29	100	0	112	51	3	14	30	1.59
61097--61160	29	2.2	29	91	5	103	54	3	12	29	1.53

Tables:   1

The End!