genome.fa.s28.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000028.1 Hibiscus syriacus cultivar Beakdansim tig00000047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109176

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278--824	196	2.8	197	87	7	807	31	17	14	36	1.90
1104--1148	19	2.4	19	96	3	83	57	8	0	33	1.30
2821--2886	33	2.0	33	87	0	96	22	43	0	33	1.54
2920--2963	21	2.1	21	86	0	61	20	31	6	40	1.79
3338--3392	24	2.5	22	81	18	62	47	3	0	49	1.19
5141--5616	183	2.6	182	87	3	690	28	15	14	40	1.87
11830--11936	55	1.9	55	98	0	205	64	3	6	25	1.34
14591--14684	49	1.9	48	89	2	143	55	3	2	39	1.28
14613--14692	25	3.2	25	69	13	67	61	2	0	36	1.10
14663--14700	20	1.9	19	89	5	58	71	0	0	28	0.87
22677--22724	23	2.1	23	84	0	60	41	20	20	16	1.90
24628--24674	24	2.0	24	86	0	67	46	6	0	46	1.28
25924--25979	25	2.2	25	87	0	85	44	21	8	25	1.81
25971--26017	22	2.1	22	88	7	69	44	23	14	17	1.85
33832--34137	148	2.1	149	97	1	587	34	22	4	38	1.75
39295--39319	3	8.3	3	100	0	50	0	0	32	68	0.90
46116--46473	176	2.0	178	92	3	598	43	4	8	44	1.54
50698--51308	142	4.3	143	85	2	764	34	11	17	36	1.86
50918--50995	32	2.4	32	81	10	88	39	8	16	34	1.80
55061--55102	15	2.7	15	81	3	57	64	0	0	35	0.94
56898--56930	14	2.4	14	94	0	57	54	0	0	45	0.99
56903--56947	22	2.0	23	86	4	65	53	2	0	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57799--57837	14	2.8	14	84	0	51	38	2	23	35	1.68
57848--57881	14	2.4	14	90	0	50	38	14	14	32	1.87
58012--58060	23	2.1	23	82	14	57	42	2	2	53	1.24
58008--58085	26	3.1	27	74	22	71	44	1	1	52	1.17
58041--58092	19	2.6	19	74	17	52	40	0	0	59	0.97
58107--58158	27	2.0	27	84	3	70	51	0	5	42	1.25
58407--58453	22	2.1	23	88	4	69	53	0	2	44	1.12
58415--58458	22	2.0	22	82	8	54	54	0	2	43	1.12
58695--58804	42	2.6	42	87	5	152	47	16	14	21	1.82
60066--60515	236	1.9	237	95	0	812	37	15	17	29	1.91
60960--60992	16	2.0	17	94	5	59	24	12	24	39	1.89
61024--61055	16	2.1	16	88	11	50	53	0	0	46	1.00
71081--71133	20	2.6	21	85	8	65	35	28	9	26	1.87
73738--73773	18	2.0	18	88	0	54	38	2	19	38	1.66
76161--76229	19	3.6	19	90	0	93	15	26	24	33	1.95
89750--89787	15	2.5	15	95	0	67	47	13	18	21	1.82
89820--89862	15	2.8	15	85	3	59	37	13	20	27	1.91
90258--90304	23	2.0	23	87	0	67	29	8	23	38	1.84
91266--91345	36	2.2	36	86	0	115	32	5	21	41	1.74
91271--91373	31	3.2	31	79	9	82	32	3	22	41	1.72
92762--92808	22	2.1	22	100	0	94	44	14	4	36	1.65
92815--92945	65	2.0	65	96	0	244	48	7	10	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93846--93894	16	2.9	16	85	8	62	63	0	2	34	1.06
93946--94000	2	27.5	2	100	0	110	49	0	0	50	1.00
93946--94013	12	5.9	11	94	3	57	51	0	0	48	1.00
94533--94592	18	3.4	18	71	15	54	26	0	3	70	1.03
94515--94603	27	3.4	27	69	21	64	29	1	4	65	1.20
96716--96753	17	2.2	17	90	9	60	13	0	15	71	1.16
96841--96899	25	2.4	25	97	0	109	59	6	10	23	1.54
97279--97386	24	4.3	24	65	17	67	28	0	13	57	1.37
97340--97460	63	1.9	63	86	6	174	31	0	13	54	1.44
102211--102238	6	4.7	6	100	0	56	14	14	17	53	1.73
105905--105944	17	2.3	18	87	8	57	47	5	27	20	1.70
107217--107318	42	2.5	41	81	1	132	23	23	22	30	1.99
108292--108385	42	2.3	41	83	5	118	23	21	23	31	1.98
107018--109176	216	10.2	215	88	4	3226	33	15	19	31	1.93
108510--108599	42	2.2	41	82	6	101	26	21	21	31	1.98

Tables:   1

The End!