genome.fa.s280.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000280.1 Hibiscus syriacus cultivar Beakdansim tig00000519_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132255

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2833--2964	56	2.4	55	83	3	176	34	14	18	31	1.91
3180--3271	47	2.0	47	91	4	150	46	11	18	22	1.82
7196--7428	54	4.3	56	87	6	320	36	12	17	33	1.87
7196--7428	107	2.1	107	86	6	335	36	12	17	33	1.87
9585--9623	19	2.1	19	90	0	60	20	2	12	64	1.40
10036--10076	2	20.5	2	100	0	82	48	0	0	51	1.00
10164--10207	23	1.9	23	86	9	63	47	34	9	9	1.67
11413--11456	21	2.2	20	84	12	54	18	2	6	72	1.17
13194--13258	10	6.7	10	76	11	64	18	7	0	73	1.06
13206--13280	21	3.7	20	79	10	80	16	12	0	72	1.13
18479--18550	35	2.1	35	92	5	119	44	4	4	47	1.41
20466--20507	20	2.2	19	91	4	66	50	2	0	47	1.14
20468--20516	24	2.0	25	84	4	64	46	2	0	51	1.12
21979--22070	46	2.0	46	91	0	148	43	6	16	33	1.73
28153--28363	110	2.0	103	87	6	305	43	19	8	27	1.80
29566--29635	18	3.8	18	94	1	113	32	12	37	17	1.87
34500--34556	30	1.9	30	96	0	105	42	10	15	31	1.81
41926--42050	60	2.1	59	88	2	187	41	13	20	24	1.88
43348--43695	40	8.8	40	79	9	347	30	16	13	39	1.87
43361--43426	20	3.4	19	69	21	55	37	18	9	34	1.82
43348--43687	119	2.8	119	82	6	352	30	16	14	39	1.88
47343--47408	12	5.7	12	80	10	75	12	18	12	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47343--47408	22	2.9	23	82	8	82	12	18	12	57	1.64
47551--47638	32	2.8	31	81	3	104	17	23	29	29	1.97
51084--51142	12	4.9	12	85	0	82	8	18	15	57	1.63
51083--51142	24	2.5	24	94	0	102	8	20	15	56	1.64
53806--53867	25	2.5	24	84	5	79	51	3	6	38	1.44
53990--54014	2	12.5	2	100	0	50	52	0	0	48	1.00
53919--54087	81	2.1	80	84	7	216	44	2	7	44	1.47
53871--54174	38	7.9	38	77	13	207	44	2	8	43	1.49
54178--54272	10	8.7	11	79	19	85	26	0	0	73	0.83
54182--54272	4	22.8	4	76	16	91	26	0	0	73	0.83
55541--55586	4	10.8	4	82	13	56	21	4	0	73	1.00
55536--55592	14	3.9	14	84	11	78	21	3	0	75	0.95
59292--59471	99	1.8	99	90	0	288	34	17	17	30	1.93
60776--61328	85	6.5	85	89	0	811	35	20	17	26	1.95
61918--62021	38	2.6	38	78	6	100	50	3	6	39	1.47
62005--62041	2	18.5	2	100	0	74	51	0	0	48	1.00
62029--62357	36	9.5	35	73	17	201	43	2	7	46	1.44
61896--62251	127	2.7	129	81	13	404	46	2	7	43	1.45
62130--62171	2	21.5	2	95	4	77	50	0	0	50	1.00
62156--62360	105	1.9	107	83	11	267	43	0	8	47	1.40
61896--62276	129	2.9	129	82	11	377	46	2	6	44	1.44
62029--62370	38	9.9	34	74	13	240	43	2	7	46	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62365--62438	28	2.5	30	84	10	98	28	1	0	70	0.96
62388--62445	12	4.3	12	78	20	53	24	1	0	74	0.92
63625--63656	15	2.1	16	94	5	57	18	6	0	75	1.01
63647--63684	15	2.4	16	86	8	60	28	7	0	63	1.23
63718--63751	18	2.0	16	88	11	50	11	5	0	82	0.83
64911--64950	19	2.1	19	86	9	55	45	0	2	52	1.14
65336--65382	18	2.5	19	82	6	60	59	4	0	36	1.17
67358--67433	33	2.3	33	86	6	109	55	2	10	31	1.48
72454--72502	23	2.1	24	92	3	82	55	4	0	40	1.19
76209--76285	17	4.6	16	74	15	66	75	0	1	23	0.88
76213--76287	20	3.8	20	75	12	66	74	0	1	24	0.89
76208--76285	18	4.6	16	74	22	63	74	0	1	24	0.89
76245--76378	17	7.8	16	68	18	74	73	1	9	15	1.17
76445--76488	9	4.7	9	83	10	61	84	0	9	6	0.79
76445--76488	20	2.3	19	88	4	61	84	0	9	6	0.79
76444--76491	19	2.5	20	90	6	73	79	0	10	10	0.95
76582--76682	26	4.0	26	84	2	134	49	21	0	27	1.56
76878--76968	2	45.5	2	100	0	182	50	0	0	49	1.00
77072--77110	18	2.2	18	85	0	51	74	0	0	25	0.82
77507--77590	14	5.6	14	72	21	55	72	2	3	21	1.11
77602--77639	17	2.2	18	85	4	51	78	5	5	10	1.06
77613--77714	17	6.1	15	68	23	53	73	6	2	16	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77667--77713	17	2.8	17	90	3	69	70	10	2	17	1.26
77749--77773	3	8.3	3	100	0	50	68	0	0	32	0.90
77922--77996	26	3.0	26	92	3	127	50	24	0	25	1.49
79851--79940	42	2.1	42	89	0	135	23	0	26	50	1.50
80100--80154	26	2.1	26	83	10	67	18	5	1	74	1.10
84134--84331	99	2.0	99	81	3	229	35	14	16	32	1.89
84990--85037	18	2.7	18	90	0	69	33	27	22	16	1.96
85592--86506	85	10.8	85	87	1	1210	35	20	17	26	1.95
85592--86506	423	2.2	423	87	2	1298	35	20	17	26	1.95
88238--88286	23	2.1	23	85	7	64	24	6	0	69	1.11
88275--88330	29	1.9	29	81	0	67	10	7	5	76	1.14
88725--88807	11	7.5	10	72	18	58	74	0	2	22	0.93
88727--88773	20	2.3	20	85	7	60	70	0	2	27	0.99
88778--88807	7	4.1	7	95	4	51	83	0	3	13	0.77
88968--89005	8	4.4	9	83	9	53	81	0	13	5	0.85
88968--89005	17	2.2	17	95	0	67	81	0	13	5	0.85
89054--89127	26	3.0	25	86	9	107	50	24	1	24	1.58
90840--91608	85	9.0	85	88	1	1065	26	17	20	35	1.95
96133--96184	18	2.9	17	81	15	61	73	1	0	25	0.94
96122--96190	22	3.3	20	72	20	52	73	1	2	21	1.04
96439--96487	24	2.0	24	88	8	71	53	18	0	28	1.45
96785--96867	28	3.0	27	79	8	87	77	2	8	12	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96831--96883	15	3.4	16	78	17	51	77	1	0	20	0.87
108218--108247	13	2.2	13	94	5	51	70	6	0	23	1.11
108217--108252	14	2.5	15	82	17	58	69	5	0	25	1.10
112057--112099	23	1.9	22	86	13	61	23	16	13	46	1.83
117307--117338	15	2.0	17	88	11	50	31	15	6	46	1.71
117398--117471	31	2.4	31	82	8	80	75	2	10	10	1.14
117431--117472	19	2.2	19	87	8	59	83	2	4	9	0.88
120743--120769	14	1.9	14	100	0	54	37	3	14	44	1.63
121275--121345	3	24.3	3	94	5	128	32	0	0	67	0.91
128594--128882	57	5.1	56	90	3	434	35	16	10	37	1.83

Tables:   1

The End!