genome.fa.s2800.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002800.1 Hibiscus syriacus cultivar Beakdansim tig00005765_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69705

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7936--7982	19	2.5	19	82	3	60	14	40	23	21	1.90
21271--21317	15	3.1	15	100	0	94	19	42	19	19	1.89
21777--21829	21	2.5	21	84	0	70	20	26	18	33	1.96
21819--21892	20	3.7	20	74	3	85	36	18	21	22	1.95
21879--21930	20	2.6	20	90	0	86	32	26	17	23	1.96
22108--22169	18	3.0	22	72	18	69	25	38	16	19	1.92
22557--22603	20	2.3	20	89	7	69	12	12	23	51	1.74
22568--22605	20	1.9	20	100	0	76	10	13	21	55	1.67
22568--22613	20	2.3	20	92	0	74	15	13	17	54	1.71
24482--24565	20	4.5	20	77	17	99	41	22	19	16	1.90
24505--24586	34	2.4	34	93	0	137	43	21	20	13	1.86
24538--24603	19	3.7	18	73	21	59	42	19	21	16	1.89
24616--24658	20	2.2	20	86	0	59	23	18	23	34	1.96
24580--24749	87	2.0	87	87	0	250	18	18	21	40	1.91
24632--24725	33	2.8	34	81	3	127	13	19	22	44	1.85
24697--24745	20	2.5	20	100	0	98	14	20	26	38	1.91
24697--24755	20	3.0	20	89	0	64	15	18	23	42	1.88
25231--25287	21	2.7	21	100	0	114	21	35	21	22	1.96
25230--25357	21	6.1	21	77	1	107	21	38	18	21	1.94
26713--26748	14	2.6	14	90	0	54	30	0	22	47	1.52
26850--26978	33	3.8	33	90	2	186	44	19	23	13	1.85
26987--27074	19	4.8	19	80	16	114	14	21	18	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26987--27096	52	2.1	53	89	1	168	15	22	17	44	1.86
27084--27133	20	2.5	20	86	0	73	22	22	22	34	1.97
27081--27147	20	3.4	19	78	15	66	20	20	22	35	1.96
29581--29634	24	2.2	24	90	0	81	40	20	16	22	1.91
30496--30602	20	5.3	20	81	8	119	21	16	20	41	1.91
38096--38205	15	7.7	15	69	24	62	30	25	6	37	1.81
38079--38209	54	2.5	53	96	2	237	31	25	5	37	1.79
43110--43222	15	8.0	14	68	23	51	32	25	5	36	1.79
43107--43226	54	2.2	53	92	2	204	32	25	5	37	1.77
44053--44080	2	14.0	2	100	0	56	50	0	0	50	1.00
53254--53302	24	2.0	24	84	0	62	48	16	12	22	1.79
53302--53378	24	3.2	24	83	10	104	41	19	14	24	1.89
53302--53396	24	4.0	24	81	8	86	43	18	13	24	1.87
53283--53396	48	2.3	48	77	11	115	43	18	14	23	1.86
54570--54604	18	1.9	18	88	0	52	28	17	0	54	1.43
63116--63192	32	2.5	31	76	4	82	33	29	20	15	1.94
68844--68869	4	6.5	4	100	0	52	23	0	0	76	0.78

Tables:   1

The End!