Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002801.1 Hibiscus syriacus cultivar Beakdansim tig00005766_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101911
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Found at i:455 original size:2 final size:2
Alignment explanation
Indices: 448--475 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
438 AGATTATGAT
448 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
476 GTTTGGCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9428 original size:23 final size:23
Alignment explanation
Indices: 9402--9449 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
9392 ATCAAGTACA
9402 ATAA-CAAAGTAGGTAGCGCTTAT
1 ATAATCAAA-TAGGTAGCGCTTAT
**
9425 ATAATGTAATAGGTAGCGCTTAT
1 ATAATCAAATAGGTAGCGCTTAT
9448 AT
1 AT
9450 TGACATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 20 0.91
24 2 0.09
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (23 bp):
ATAATCAAATAGGTAGCGCTTAT
Found at i:9435 original size:87 final size:87
Alignment explanation
Indices: 9287--9449 Score: 272
Period size: 87 Copynumber: 1.9 Consensus size: 87
9277 TATATTATAT
* * *
9287 CATTTAACCGGAAATATTATCAAGCACAATAACATATTAGGTAACGCTTATATAATTTAATAGGT
1 CATTTAACCGGAAATATTATCAAGCACAATAACAAAGTAGGTAACGCTTATATAATGTAATAGGT
*
9352 AGTGCTTATATAATAAAATAGG
66 AGCGCTTATATAATAAAATAGG
* *
9374 CATTTAACCGGAAATATTATCAAGTACAATAACAAAGTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTATCAAGCACAATAACAAAGTAGGTAACGCTTATATAATGTAATAGGT
9439 AGCGCTTATAT
66 AGCGCTTATAT
9450 TGACATATTT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 70 1.00
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.31
Consensus pattern (87 bp):
CATTTAACCGGAAATATTATCAAGCACAATAACAAAGTAGGTAACGCTTATATAATGTAATAGGT
AGCGCTTATATAATAAAATAGG
Found at i:9807 original size:199 final size:198
Alignment explanation
Indices: 9468--9968 Score: 607
Period size: 199 Copynumber: 2.5 Consensus size: 198
9458 TTTCTCATAA
* * * * *
9468 AACCGGTAAATTTAAACCGGTTACATTATAAATTGACCTATTACATTAT-GTATATCGGTTTCGA
1 AACCGGTATATTTTAACCGGTTACATTGTAAATTTACCTATTACATTATAAT-TATCGGTTTCGA
* * * ***
9532 TGTTTTCGGGATCGATACAATTTT-AAATGTATTGACACTTTATGCGTACAACTCGTTTGTGTTT
65 TGATTTCGGGATCGATAC-TTTTTAAAATGTATCGACACTTTATGCGTACAACTCGTTTGCCATT
* * * *
9596 TATTTTGGAAAAAAAGTATCGACACATATTTAAAGAGTGTCGATACATAATGTGGACCTATT-TG
129 CATTTTGGAAAAAAAGTATCGACACAAATTAAAAAAGTGTCGATACATAATGTGGACCTATTCT-
*
9660 CTAATT
193 CTAATG
* * *
9666 AACCGGTATATTTTAACCGGTTACATTGTAAATTTACCTGTTACATAATAATTATCGATTTCGAT
1 AACCGGTATATTTTAACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGAT
*
9731 G-TTTCGAGGATCGATACTTTTTACAAATGTATCGACACTTTATGCGTACACCTCGTTTGCCATT
66 GATTTCG-GGATCGATACTTTTTA-AAATGTATCGACACTTTATGCGTACAACTCGTTTGCCATT
* * * *
9795 CATTTTGGAAAAAATGTATCGACACAAATTAAAAAAGTGTCGATACTTTATGTTGACCTATTCTC
129 CATTTTGGAAAAAAAGTATCGACACAAATTAAAAAAGTGTCGATACATAATGTGGACCTATTCTC
*
9860 TCATG
194 TAATG
* * * *
9865 AACCCGGTATATTTCT-ACCAGTTACATTGGAAATTTACCTATTACATTATAATTATCGGTCTCT
1 AA-CCGGTATATTT-TAACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCG
* * *
9929 TTGATTTTGGGATCGATACTTGTTATAAATGTATCGACAC
64 ATGATTTCGGGATCGATACTTTTTA-AAATGTATCGACAC
9969 AAAATCTAAT
Statistics
Matches: 260, Mismatches: 35, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
197 9 0.03
198 66 0.25
199 96 0.37
200 84 0.32
201 5 0.02
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (198 bp):
AACCGGTATATTTTAACCGGTTACATTGTAAATTTACCTATTACATTATAATTATCGGTTTCGAT
GATTTCGGGATCGATACTTTTTAAAATGTATCGACACTTTATGCGTACAACTCGTTTGCCATTCA
TTTTGGAAAAAAAGTATCGACACAAATTAAAAAAGTGTCGATACATAATGTGGACCTATTCTCTA
ATG
Found at i:12301 original size:182 final size:182
Alignment explanation
Indices: 12054--13010 Score: 1501
Period size: 182 Copynumber: 5.3 Consensus size: 182
12044 CGCTTTACCG
* * * *
12054 GTTTTGTCATATTTTTACCTATTATATTGTTATGGATCGATACATTT-TCATAAAGTATTGACAC
1 GTTTTGTCATATTATTACCTGTTATATTGCTATGGATCGATACATTTGT-ATAAAGTATCGACAC
* * *
12118 TTTTTAGGCTCTATAATTTCTTCTCTTTTAAATTACGAAAGTGTCGATACTTATATTAATTTATC
65 TTTTTAGGCGCTATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTATC
12183 GACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCT
130 GACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCT
* * *
12236 GTTTTTTCATACTATTACCTGTTATATTGATATGGATCGATACATTTGTATAAAGTATCGACACT
1 GTTTTGTCATATTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACT
* * *
12301 TTTTAGGCGCTATAACTTATTCTCTTTTAAATATA-AAAAGTATCGATAATTATATTAATTTATC
66 TTTTAGGCGCTATAACTTCTTCTCTTTTAAAT-TACAAAAGTGTCGATACTTATATTAATTTATC
12365 GACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCT
130 GACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCT
* * *
12418 ATTTTTTCATATTATTACCTGTTATATTGATATGGATCGATACATTTGTATAAAGTATCGACACT
1 GTTTTGTCATATTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACT
*
12483 TTTTAAGCGCTATAACTTCTTCTCTTTTAAA-TATCAAAAGTGTCGATACTTATATTAATTTATC
66 TTTTAGGCGCTATAACTTCTTCTCTTTTAAATTA-CAAAAGTGTCGATACTTATATTAATTTATC
12547 GACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCT
130 GACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCT
*
12600 GTTTTGTCATATTATTACCTGTTATATTGCTATGGATCGATATATTTGTATAAAGTATCGACACT
1 GTTTTGTCATATTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACT
* *
12665 TTTTAGGCGCTATAACTTCTTCTCTTTTAAATTAAAAAAGTGTCGATACTTATATTAATTTATTG
66 TTTTAGGCGCTATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTATCG
* ** * * * *
12730 ACACTTTCAATATATTCGGTAGCGGTTTATCGGTTTTATCATAAT-GACACCG
131 ACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCAT-TTCGAGACCT
*
12782 GTTTTGTCATATTATTACATGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACT
1 GTTTTGTCATATTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACT
*
12847 TTATAGGCGCTATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTATCG
66 TTTTAGGCGCTATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTATCG
** * * *
12912 ACACTTTCAATATATCCGGTAGCGGTTTACCGGTTTTATCATAAT-GACACCG
131 ACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCAT-TTCGAGACCT
* * *
12964 GTTTTATCATATTTTTACCTGTTATATTGCTATGGATTGATACATTT
1 GTTTTGTCATATTATTACCTGTTATATTGCTATGGATCGATACATTT
13011 TTCATTTGTA
Statistics
Matches: 726, Mismatches: 43, Indels: 12
0.93 0.06 0.02
Matches are distributed among these distances:
180 2 0.00
182 718 0.99
183 6 0.01
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.43
Consensus pattern (182 bp):
GTTTTGTCATATTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACT
TTTTAGGCGCTATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTATCG
ACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCT
Found at i:13358 original size:23 final size:23
Alignment explanation
Indices: 13311--13362 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
13301 AATAACATAT
* * **
13311 TAGGCAGCGCTTATATAATGTAA
1 TAGGTAGCGCTAATATAATAAAA
13334 TAGGTAGCGCTAATATAATAAAA
1 TAGGTAGCGCTAATATAATAAAA
13357 TAGGTA
1 TAGGTA
13363 TTTAACCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (23 bp):
TAGGTAGCGCTAATATAATAAAA
Found at i:13415 original size:23 final size:23
Alignment explanation
Indices: 13389--13436 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
13379 ATCAAGTACA
13389 ATAA-CAAATTAGGTAGCGCTTAT
1 ATAATCAAA-TAGGTAGCGCTTAT
**
13412 ATAATGTAATAGGTAGCGCTTAT
1 ATAATCAAATAGGTAGCGCTTAT
13435 AT
1 AT
13437 TGGACTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 20 0.91
24 2 0.09
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAATCAAATAGGTAGCGCTTAT
Found at i:13421 original size:87 final size:87
Alignment explanation
Indices: 13275--13436 Score: 270
Period size: 87 Copynumber: 1.9 Consensus size: 87
13265 ATATTATATC
** *
13275 ATTTAACCGGAAATATTATCAAGCACAATAACATATTAGGCAGCGCTTATATAATGTAATAGGTA
1 ATTTAACCAAAAATATTATCAAGCACAATAACAAATTAGGCAGCGCTTATATAATGTAATAGGTA
13340 GCGCTAATATAATAAAATAGGT
66 GCGCTAATATAATAAAATAGGT
* *
13362 ATTTAACCAAAAATATTATCAAGTACAATAACAAATTAGGTAGCGCTTATATAATGTAATAGGTA
1 ATTTAACCAAAAATATTATCAAGCACAATAACAAATTAGGCAGCGCTTATATAATGTAATAGGTA
*
13427 GCGCTTATAT
66 GCGCTAATAT
13437 TGGACTATTT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 69 1.00
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (87 bp):
ATTTAACCAAAAATATTATCAAGCACAATAACAAATTAGGCAGCGCTTATATAATGTAATAGGTA
GCGCTAATATAATAAAATAGGT
Found at i:13936 original size:201 final size:196
Alignment explanation
Indices: 13445--13955 Score: 516
Period size: 201 Copynumber: 2.6 Consensus size: 196
13435 ATTGGACTAT
* * * * *
13445 TTTCTCATAAAACCGATAAATTTAAACCGGTTACATTATAAATTGACCTATTATATTAT-GTATA
1 TTTCTCAT-AAACCGATATATTTATACCGGTTACATTGTAAATTTACCTATTATATTATAAT-TA
* ** * *
13509 TCAGTTTCGATG-TTTTCGGGATCGATACAATTTT-AAATGTATCGACACTTTATGCATGCAACT
64 TC-GTATCTTTGATTTTCGGGATCGATAC-TTTTTAAAATGTATCGACACTTTATGCATACAACT
* * * * *
13572 CGTTTGTGCTTTATTTTGGAAAAAAGTATCGACACATATTTAAAGAGTGTCAATACATAATGTAG
127 CGTTTGTCCTTCATTTTGGAAAAAAGTATCGACACAAATTAAAAAAGTGTCAATACATAATGTAG
13637 ACCTA
192 ACCTA
* * * * * * *
13642 TTTGCTAATTAACCGGTATATTT-TAACCGGTTACATTGTAAATTTACTTGTTACATAATAATTA
1 TTT-CTCATAAACCGATATATTTAT-ACCGGTTACATTGTAAATTTACCTATTATATTATAATTA
* * *
13706 TCG-AT-TTTGATGTTTCGAGGATTGATACTTTTTACAAATGTATCGACACTTTATGCGTACACC
64 TCGTATCTTTGAT-TTTCG-GGATCGATACTTTTTA-AAATGTATCGACACTTTATGCATACAAC
* * *
13769 TCGTTTG-CCATTCATTTTGGAAAAAAATGTATCGACACAAATTAAAAAAGTGTCGATACTTTAT
126 TCGTTTGTCC-TTCATTTTGG-AAAAAA-GTATCGACACAAATTAAAAAAGTGTCAATACATAAT
*
13833 GTTGACCTA
188 GTAGACCTA
* * *
13842 TTCTCTCATGAACCCGATATATTTATACTGGTTACATTGGAAATTTACCTATTATATTATAATTA
1 TT-TCTCAT-AAACCGATATATTTATACCGGTTACATTGTAAATTTACCTATTATATTATAATTA
* *
13907 TCGGTCTCTTTGATTTT-GGGATCGATACTTGTTATAAATGTATCGACAC
64 TC-GTATCTTTGATTTTCGGGATCGATACTTTTTA-AAATGTATCGACAC
13956 AAAATCTAAT
Statistics
Matches: 254, Mismatches: 43, Indels: 30
0.78 0.13 0.09
Matches are distributed among these distances:
194 2 0.01
195 2 0.01
196 10 0.04
197 56 0.22
198 46 0.18
199 6 0.02
200 44 0.17
201 75 0.30
202 3 0.01
203 4 0.02
204 6 0.02
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (196 bp):
TTTCTCATAAACCGATATATTTATACCGGTTACATTGTAAATTTACCTATTATATTATAATTATC
GTATCTTTGATTTTCGGGATCGATACTTTTTAAAATGTATCGACACTTTATGCATACAACTCGTT
TGTCCTTCATTTTGGAAAAAAGTATCGACACAAATTAAAAAAGTGTCAATACATAATGTAGACCT
A
Found at i:16352 original size:182 final size:181
Alignment explanation
Indices: 15999--17006 Score: 1456
Period size: 182 Copynumber: 5.6 Consensus size: 181
15989 ATTAAAGTAC
* * * * * * * *
15999 CGACACTTTCAACATAACCGATAGCGCTTTACCGGTTTTGTTATTTCGATACCGGTTTTGTCATA
1 CGACACTTTCAATATATCCGGTAGCGTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
* * * *
16064 TT-TTACCTATTATATTGTTATGGATCGATACA-TT-CATAAAGTATTGACACTTTTTAGGCGCT
66 TTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
* *
16126 ATAATTTATTCTCTTTTAAATTACGAAAGTGTCGATACTTATATTAATTTAT
131 ATAACTTCTTCTCTTTTAAATTAC-AAAGTGTCGATACTTATATTAATTTAT
*
16178 CGACACTTTCAATATATCCGGTAGCTTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
1 CGACACTTTCAATATATCCGGTAGCGTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
* * *
16243 TTATTACCTGTTATATTGCTATGTATCAATACATTTGTATAAAATATCGACACTTTTTAGGCGCT
66 TTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
* *
16308 ATAACTTCTTCTCTTTTAAATATA-AAATTTGTCGATAATTATATTAATTTAT
131 ATAACTTCTTCTCTTTTAAAT-TACAAA-GTGTCGATACTTATATTAATTTAT
** * *
16360 CGACACTTTCAATATATCTAGTAGCTTTTTACCGGTTTTATTATTTCGAGACCTGTTTTGTCATA
1 CGACACTTTCAATATATCCGGTAGCGTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
* *
16425 TTATTACCTGTTATATTGATATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGTGCT
66 TTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
*
16490 ATAATTTCTTCTCTTTTAAA-TATCAAAAGTGTCGATACTTATATTAATTTAT
131 ATAACTTCTTCTCTTTTAAATTA-C-AAAGTGTCGATACTTATATTAATTTAT
* * * * *
16542 CGACACTTTCAATATATCCGATAACTTTTTACCGGTTTTATCATTTCAAGACTTGTTTTGTCATA
1 CGACACTTTCAATATATCCGGTAGCGTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
* *
16607 TTATTACCTATTATATTGTTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
66 TTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
*
16672 ATAACTTCTTCTCTTTTAAATTACAAAAGTGTTGATACTTATATTAATTTAT
131 ATAACTTCTTCTCTTTTAAATTAC-AAAGTGTCGATACTTATATTAATTTAT
* * * *
16724 CGACACTTTCAATATATCCGGTAGCGGTTTACCGGTTTTATCATAAT-GACACCGGTTTTGTCAT
1 CGACACTTTCAATATATCCGGTAGCGTTTTACCGGTTTTATCAT-TTCGAGACCTGTTTTGTCAT
* *
16788 ATTATTACATGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTATAGGCGC
65 ATTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGC
16853 TATAACTTCTTCTCTTTTAAATTACAAAAGTGTCGATACTTATATTAATTTAT
130 TATAACTTCTTCTCTTTTAAATTAC-AAAGTGTCGATACTTATATTAATTTAT
* * * *
16906 CGACACTTTCAATATATCCGGTAGCGGTTTACCGGTTTTATCATAAT-GACACC-GATTTTATCA
1 CGACACTTTCAATATATCCGGTAGCGTTTTACCGGTTTTATCAT-TTCGAGACCTG-TTTTGTCA
*
16969 TATTTTTACCTGTTATATTGCTATGGATCGATACATTT
64 TATTATTACCTGTTATATTGCTATGGATCGATACATTT
17007 TTCATTTGTA
Statistics
Matches: 758, Mismatches: 60, Indels: 19
0.91 0.07 0.02
Matches are distributed among these distances:
179 58 0.08
180 28 0.04
181 6 0.01
182 658 0.87
183 8 0.01
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (181 bp):
CGACACTTTCAATATATCCGGTAGCGTTTTACCGGTTTTATCATTTCGAGACCTGTTTTGTCATA
TTATTACCTGTTATATTGCTATGGATCGATACATTTGTATAAAGTATCGACACTTTTTAGGCGCT
ATAACTTCTTCTCTTTTAAATTACAAAGTGTCGATACTTATATTAATTTAT
Found at i:17785 original size:26 final size:27
Alignment explanation
Indices: 17736--17786 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
17726 TGTTGATACG
* * *
17736 ATTTTCAATAATTAAAATATCTGTATT
1 ATTTTCAATAATAAAAAAAACTGTATT
17763 ATTTTCAATAA-AAAAAAAACTGTA
1 ATTTTCAATAATAAAAAAAACTGTA
17787 CACATCTCTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 10 0.48
27 11 0.52
ACGTcount: A:0.49, C:0.08, G:0.04, T:0.39
Consensus pattern (27 bp):
ATTTTCAATAATAAAAAAAACTGTATT
Found at i:24741 original size:8 final size:8
Alignment explanation
Indices: 24712--24783 Score: 53
Period size: 8 Copynumber: 8.9 Consensus size: 8
24702 AAATTATATT
24712 TATTGATAA
1 TATT-ATAA
24721 T-TT-TAA
1 TATTATAA
*
24727 TAATATAA
1 TATTATAA
24735 TATTATATAA
1 TA-T-TATAA
*
24745 TATTATTA
1 TATTATAA
24753 TAATTAT-A
1 T-ATTATAA
24761 TAATTATAA
1 T-ATTATAA
24770 TA-TATAA
1 TATTATAA
24777 TATTATA
1 TATTATA
24784 CTTTTATTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
6 4 0.08
7 8 0.15
8 25 0.47
9 9 0.17
10 7 0.13
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (8 bp):
TATTATAA
Found at i:24750 original size:42 final size:41
Alignment explanation
Indices: 24662--24783 Score: 112
Period size: 42 Copynumber: 2.9 Consensus size: 41
24652 TAATATTACT
*
24662 ATATTAT-TTTAGTATCATTTTAATAA-A-AATATTAAGTATTA
1 ATATTATATTTA-TATAATTTTAATAATATAATATT-A-TATTA
24703 A-ATTATATTTATTGATAATTTTAATAATATAATATTATA-TA
1 ATATTATATTTA-T-ATAATTTTAATAATATAATATTATATTA
*
24744 ATATTATTATAATTATATAATTATAAT-ATATAATATTATA
1 ATATTA-TAT--TTATATAATTTTAATAATATAATATTATA
24784 CTTTTATTTT
Statistics
Matches: 70, Mismatches: 3, Indels: 15
0.80 0.03 0.17
Matches are distributed among these distances:
40 5 0.07
41 9 0.13
42 31 0.44
43 15 0.21
44 7 0.10
45 3 0.04
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (41 bp):
ATATTATATTTATATAATTTTAATAATATAATATTATATTA
Found at i:24791 original size:40 final size:42
Alignment explanation
Indices: 24717--24802 Score: 106
Period size: 40 Copynumber: 2.1 Consensus size: 42
24707 ATATTTATTG
* *
24717 ATAATTTTAATAATATAATATTATATAATATTATTATAATTAT
1 ATAATTATAATAATATAATATTATAT-ATATTATTATAATAAT
*
24760 ATAATTATAAT-ATATAATATTATACT-T-TTATTTTAATAAT
1 ATAATTATAATAATATAATATTATA-TATATTATTATAATAAT
24800 ATA
1 ATA
24803 TAATGAATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
40 14 0.36
41 1 0.03
42 13 0.33
43 11 0.28
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (42 bp):
ATAATTATAATAATATAATATTATATATATTATTATAATAAT
Found at i:24951 original size:23 final size:23
Alignment explanation
Indices: 24897--24957 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
24887 CTTAAAATAT
* * *
24897 AATATAATATTC-TTATTTTAAT
1 AATATAATTTTCAATATTTTAAC
*
24919 ATTATAATTTTCAATATTTTAAC
1 AATATAATTTTCAATATTTTAAC
* *
24942 AATATTATTTTTAATA
1 AATATAATTTTCAATA
24958 AAAAATTAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 10 0.32
23 21 0.68
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (23 bp):
AATATAATTTTCAATATTTTAAC
Found at i:24985 original size:20 final size:20
Alignment explanation
Indices: 24952--25022 Score: 52
Period size: 20 Copynumber: 3.5 Consensus size: 20
24942 AATATTATTT
* *
24952 TTAATAAAAAATTAATATAA
1 TTAATAATATATTAATATAA
* * *
24972 TTAATAATATATTATTCTTATT
1 TTAATAATATATTAAT-ATA-A
* *
24994 TTAATAATTTATTACTATAA
1 TTAATAATATATTAATATAA
*
25014 TTTATAATA
1 TTAATAATA
25023 ATTTTATTTT
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
20 20 0.53
21 4 0.11
22 14 0.37
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
TTAATAATATATTAATATAA
Found at i:25016 original size:22 final size:22
Alignment explanation
Indices: 24972--25026 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
24962 ATTAATATAA
* * * *
24972 TTAATAATATATTATTCTTATT
1 TTAATAATTTATTACTATAATT
24994 TTAATAATTTATTACTATAATT
1 TTAATAATTTATTACTATAATT
25016 TATAATAATTT
1 T-TAATAATTT
25027 TATTTTAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 19 0.68
23 9 0.32
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATAATTTATTACTATAATT
Found at i:25044 original size:14 final size:13
Alignment explanation
Indices: 25027--25087 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 13
25017 ATAATAATTT
25027 TATTTTAATCATAA
1 TATTTTAAT-ATAA
*
25041 TATTTTTATTTATAA
1 TA-TTTTA-ATATAA
* *
25056 AATTGTAGATATAA
1 TATTTTA-ATATAA
25070 TATTTTAATAATAA
1 TATTTTAAT-ATAA
25084 TATT
1 TATT
25088 GACATAAATA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
13 2 0.05
14 24 0.65
15 10 0.27
16 1 0.03
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (13 bp):
TATTTTAATATAA
Found at i:25134 original size:20 final size:20
Alignment explanation
Indices: 25096--25134 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
25086 TTGACATAAA
*
25096 TAATATTAAATAATGTATTT
1 TAATATTAAAAAATGTATTT
25116 TAATATTTAAAAAAT-TATT
1 TAATA-TTAAAAAATGTATT
25135 ATTATTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TAATATTAAAAAATGTATTT
Found at i:25272 original size:13 final size:14
Alignment explanation
Indices: 25248--25280 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
25238 TAAACATCAT
25248 AAAATAATTTTTAA
1 AAAATAATTTTTAA
25262 AAAATAA-TTTTAA
1 AAAATAATTTTTAA
25275 AAAATA
1 AAAATA
25281 TAATTCATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AAAATAATTTTTAA
Found at i:25283 original size:15 final size:14
Alignment explanation
Indices: 25248--25285 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
25238 TAAACATCAT
*
25248 AAAATAATTTTTAA
1 AAAATAATTTTAAA
25262 AAAATAATTTTAAA
1 AAAATAATTTTAAA
25276 AAATATAATT
1 AAA-ATAATT
25286 CATCTTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAAATAATTTTAAA
Found at i:25400 original size:42 final size:42
Alignment explanation
Indices: 25354--25433 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
25344 AACAGACCGA
* *
25354 AAAAAATATTTTTCAAAAAATGAATTACCTGAAACAAATACG
1 AAAAAATATTTTTCAAAAAACGAATTACATGAAACAAATACG
* * *
25396 AAAAATTATTTTTTAAAAAACGAATTATATGAAACAAA
1 AAAAAATATTTTTCAAAAAACGAATTACATGAAACAAA
25434 CACAGAATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.56, C:0.09, G:0.06, T:0.29
Consensus pattern (42 bp):
AAAAAATATTTTTCAAAAAACGAATTACATGAAACAAATACG
Found at i:25699 original size:23 final size:21
Alignment explanation
Indices: 25672--25738 Score: 55
Period size: 23 Copynumber: 3.0 Consensus size: 21
25662 AAAATTATAT
25672 AAAATGAATATAAATAAAAGTTA
1 AAAATGAATATAAATAAAA--TA
*
25695 AAAATAGACATATTTAATAAAATA
1 AAAAT-GA-ATA-TAAATAAAATA
*
25719 AATAATTAATATAAA-AAAAT
1 AA-AATGAATATAAATAAAAT
25739 TTAGATTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
21 5 0.14
22 3 0.08
23 8 0.22
24 7 0.19
25 6 0.16
26 8 0.22
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.28
Consensus pattern (21 bp):
AAAATGAATATAAATAAAATA
Found at i:33136 original size:15 final size:16
Alignment explanation
Indices: 33104--33136 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
33094 AAAATCTTTC
33104 TTTCCCGTTCTAGATT
1 TTTCCCGTTCTAGATT
*
33120 TTTCCCG-TCTGGATT
1 TTTCCCGTTCTAGATT
33135 TT
1 TT
33137 GATCTGCCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.09, C:0.24, G:0.15, T:0.52
Consensus pattern (16 bp):
TTTCCCGTTCTAGATT
Found at i:33910 original size:16 final size:16
Alignment explanation
Indices: 33886--33919 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
33876 TATCGCCGAC
*
33886 CGAATTTCACTATTCA
1 CGAAATTCACTATTCA
33902 CGAAATTCACTATTCA
1 CGAAATTCACTATTCA
33918 CG
1 CG
33920 TGAATAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (16 bp):
CGAAATTCACTATTCA
Found at i:36533 original size:15 final size:14
Alignment explanation
Indices: 36506--36545 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
36496 CTCTTTGTAG
36506 TTATTTA-TTTTTA
1 TTATTTATTTTTTA
36519 TATATTTATTTTTTA
1 T-TATTTATTTTTTA
36534 TTATTTTATTTT
1 TTA-TTTATTTT
36546 ATAAATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.04
14 8 0.33
15 15 0.62
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (14 bp):
TTATTTATTTTTTA
Found at i:37572 original size:54 final size:54
Alignment explanation
Indices: 37415--37576 Score: 234
Period size: 54 Copynumber: 3.0 Consensus size: 54
37405 GATTGAGAAA
* * * * * *
37415 TCTGGGCAGAAGCCACATGAAAGGATGAATGAGTTGTCAAATATTTTACAAACA
1 TCTGGGCAGAAGCCACAGGAAACGATGAATGTGTTGTCAAATGTTTTACGAACC
*
37469 TCTGGGCAGAAGCCACAGGAAATGATGAATGTGTTGTCAAATGTTTTACGAACC
1 TCTGGGCAGAAGCCACAGGAAACGATGAATGTGTTGTCAAATGTTTTACGAACC
* * *
37523 TCTGGACAGAAGCCATAGGAAACGATGAACGTGTTGTCAAATGTTTTACGAACC
1 TCTGGGCAGAAGCCACAGGAAACGATGAATGTGTTGTCAAATGTTTTACGAACC
37577 AGTGATTATA
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 98 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.25
Consensus pattern (54 bp):
TCTGGGCAGAAGCCACAGGAAACGATGAATGTGTTGTCAAATGTTTTACGAACC
Found at i:38803 original size:76 final size:76
Alignment explanation
Indices: 38666--38933 Score: 389
Period size: 76 Copynumber: 3.6 Consensus size: 76
38656 TTCCCACATA
**
38666 TGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAGGC
1 TGTAAGCCCTTCAGTGCATGATGTTTTC-AAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAAC
38731 CTTCGGGTCATC
65 CTTCGGGTCATC
* *
38743 TGTAAGCCTTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGCTTTCAAAACC
1 TGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAACC
38808 TTCGGGTCATC
66 TTCGGGTCATC
** * * * * * * *
38819 -AAAAGACCTACAGTGCAGGATATTTTCAAAAAGCCTTTGGGAGTTTTTTGATATTTTCAAAACC
1 TGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAACC
38883 TTCGGGTCATC
66 TTCGGGTCATC
38894 TGTAAGCCCTTCAGTGCATGATGTTTTC--AAAGCCTTCGGG
1 TGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGG
38934 TCATCTGTAA
Statistics
Matches: 168, Mismatches: 22, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
74 11 0.07
75 64 0.38
76 66 0.39
77 27 0.16
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (76 bp):
TGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAACC
TTCGGGTCATC
Found at i:38923 original size:45 final size:45
Alignment explanation
Indices: 38867--39025 Score: 219
Period size: 45 Copynumber: 3.5 Consensus size: 45
38857 GGGAGTTTTT
*
38867 TGATATTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
38912 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * ** * *
38957 TGATGTTTTTAAAGCCTTCGGGTCATCCATAAGACCTACAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
39002 GGATGTTTTCAAAAAGCCTTCGGG
1 TGATGTTTTC-AAAA-CCTTCGGG
39026 AGCTTTTTGA
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 91 0.89
46 3 0.03
47 8 0.08
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:39039 original size:76 final size:76
Alignment explanation
Indices: 38957--39242 Score: 428
Period size: 76 Copynumber: 3.8 Consensus size: 76
38947 CTTCAGTGCA
* *
38957 TGATGTTTTTAAAGCCTTCGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTT
39022 CGGGAGCTTTT
66 CGGGAGCTTTT
*
39033 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGTAGGATGTTTTCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTT
39098 CGGGAGCTTTT
66 CGGGAGCTTTT
** * * *
39109 TGATGTTTTCAAAACCTTCGGGTCATCTGTAACACCTATAGTGCATGATGTTTTCAAAAAGCCTT
1 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTT
39174 CGGGAGCTTTT
66 CGGGAGCTTTT
* * * ** * * *
39185 TGATATTTTTAAAACCTTCAGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAA
1 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAA
39243 GCCTTCTGAC
Statistics
Matches: 194, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 194 1.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.35
Consensus pattern (76 bp):
TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTT
CGGGAGCTTTT
Found at i:39550 original size:188 final size:191
Alignment explanation
Indices: 39226--39599 Score: 727
Period size: 188 Copynumber: 2.0 Consensus size: 191
39216 AGCCCTTCAG
39226 TGCATGATGTTTTCAAAGCCTTCTGACAACTATCGTTTCGATGTCAAAATAAATTCCTTCTTCTC
1 TGCATGATGTTTTCAAAGCCTTCTGACAACTATCGTTTCGATGTCAAAATAAATTCCTTCTTCTC
39291 GGATACTAATTAAAGGAAAATTCGTAGCGTAGAGAAGTAGGGTCGAATCCACAGGGACTTGAAAA
66 GGATACTAATTAAAGGAAAATTCGTAGCGTAGAGAAGTAGGGTCGAATCCACAGGGACTTGAAAA
39356 ATTCTT-ATTTAATG-TTGATTGGTCTATGGCAGGCGTGAAAGATAGTAGAATGGGGGTTT
131 ATTCTTAATTTAATGTTTGATTGGTCTATGGCAGGCGTGAAAGATAGTAGAATGGGGGTTT
39415 TGCATG-TGTTTTCAAAGCCTTCTGACAACTATCGTTTCGATGTCAAAATAAATTCCTTCTTCTC
1 TGCATGATGTTTTCAAAGCCTTCTGACAACTATCGTTTCGATGTCAAAATAAATTCCTTCTTCTC
39479 GGATACTAATTAAAGGAAAATTCGTAGCGTAGAGAAGTAGGGTCGAATCCACAGGGACTTGAAAA
66 GGATACTAATTAAAGGAAAATTCGTAGCGTAGAGAAGTAGGGTCGAATCCACAGGGACTTGAAAA
39544 ATTCTTAATTTAATGTTTGATTGGTCTATGGCAGGCGTGAAAGATAGTAGAATGGG
131 ATTCTTAATTTAATGTTTGATTGGTCTATGGCAGGCGTGAAAGATAGTAGAATGGG
39600 TTTTGGGTAG
Statistics
Matches: 183, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
188 129 0.70
189 14 0.08
190 40 0.22
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (191 bp):
TGCATGATGTTTTCAAAGCCTTCTGACAACTATCGTTTCGATGTCAAAATAAATTCCTTCTTCTC
GGATACTAATTAAAGGAAAATTCGTAGCGTAGAGAAGTAGGGTCGAATCCACAGGGACTTGAAAA
ATTCTTAATTTAATGTTTGATTGGTCTATGGCAGGCGTGAAAGATAGTAGAATGGGGGTTT
Found at i:44381 original size:6 final size:6
Alignment explanation
Indices: 44372--44399 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
44362 CAAAAAGTAA
44372 AAATAT AAATAT AAATAT AAATAT AAAT
1 AAATAT AAATAT AAATAT AAATAT AAAT
44400 GTAACGGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATAT
Found at i:51192 original size:45 final size:47
Alignment explanation
Indices: 51139--51242 Score: 133
Period size: 45 Copynumber: 2.3 Consensus size: 47
51129 TGATGTTTTT
* * *
51139 AAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGG-TGTTCTC-A
1 AAAGCCTTCGGGTCATCTATAAGACCTACAGTGCA-GGATGTTCTCAA
* *
51185 AAA-CCTTCGGGTCATCTATAAGACGTACAGTGCAGGATGTTTTCAA
1 AAAGCCTTCGGGTCATCTATAAGACCTACAGTGCAGGATGTTCTCAA
51231 AAAGCCTTCGGG
1 AAAGCCTTCGGG
51243 AGCTTTTTGA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
44 2 0.04
45 33 0.66
46 7 0.14
47 8 0.16
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (47 bp):
AAAGCCTTCGGGTCATCTATAAGACCTACAGTGCAGGATGTTCTCAA
Found at i:51262 original size:76 final size:76
Alignment explanation
Indices: 51177--51392 Score: 328
Period size: 76 Copynumber: 2.9 Consensus size: 76
51167 CAGTGCATGG
* *
51177 TGTTCTCAAAACCTTCGGGTCATCTATAAGACGTACAGTGCAGGATGTTTTCAAAAAGCCTTCGG
1 TGTTTTCAAAACCTTCGGGTCATCTATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGG
51242 GAGCTTTTTGA
66 GAGCTTTTTGA
* *
51253 TGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAATGCAGGATGTTTTCAAAAAGCCTTCGG
1 TGTTTTCAAAACCTTCGGGTCATCTATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGG
51318 GAGCTTTTTGA
66 GAGCTTTTTGA
* * * * * *
51329 TGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTACATGATGTTTTC-AAAA-CCTTCGG
1 TGTTTTCAAAACCTTCGGGTCATCTATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGG
51392 G
66 G
51393 TCATCTGTAA
Statistics
Matches: 128, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
74 8 0.06
75 4 0.03
76 116 0.91
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (76 bp):
TGTTTTCAAAACCTTCGGGTCATCTATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGG
GAGCTTTTTGA
Found at i:51307 original size:121 final size:122
Alignment explanation
Indices: 51066--51318 Score: 368
Period size: 121 Copynumber: 2.1 Consensus size: 122
51056 AACATTCATC
*
51066 ACCTTCGGGTCATCCATAAGATCTAGAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTG
1 ACCTTCGGGTCATCCATAAGATCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTG
* * ** * * *
51131 ATGTTTTTAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGGTGTTCTC-AAA
66 ATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAATGCATGGTGTTCTCAAAA
*
51187 ACCTTCGGGTCATCTATAAGA-CGTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTT
1 ACCTTCGGGTCATCCATAAGATC-TACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTT
*
51251 GATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAATGCA-GGATGTTTTCAAAA
65 GATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAATGCATGG-TGTTCTCAAAA
51309 AGCCTTCGGG
1 A-CCTTCGGG
51319 AGCTTTTTGA
Statistics
Matches: 118, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
120 3 0.03
121 103 0.87
122 4 0.03
123 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (122 bp):
ACCTTCGGGTCATCCATAAGATCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTG
ATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAATGCATGGTGTTCTCAAAA
Found at i:51375 original size:45 final size:45
Alignment explanation
Indices: 51326--51429 Score: 163
Period size: 45 Copynumber: 2.3 Consensus size: 45
51316 GGGAGCTTTT
* * *
51326 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTACA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTACA
**
51371 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTGTA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTACA
51416 TGATGTTTTCAAAA
1 TGATGTTTTCAAAA
51430 ACCTCCAGTG
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAGTACA
Found at i:51413 original size:197 final size:197
Alignment explanation
Indices: 51066--51430 Score: 631
Period size: 197 Copynumber: 1.9 Consensus size: 197
51056 AACATTCATC
* * *
51066 ACCTTCGGGTCATCCATAAGATCTAGAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTG
1 ACCTTCGGGTCATCCATAAGACCTACAATGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTG
* * *
51131 ATGTTTTTAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGGTGTTCTCAAAACCTTCGGG
66 ATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTACATGATGTTCTCAAAACCTTCGGG
*
51196 TCATCTATAAGACGTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
131 TCATCTATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
51261 AA
196 AA
51263 ACCTTCGGGTCATCCATAAGACCTACAATGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTG
1 ACCTTCGGGTCATCCATAAGACCTACAATGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTG
*
51328 ATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTACATGATGTTTTCAAAACCTTCGGG
66 ATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTACATGATGTTCTCAAAACCTTCGGG
* * *
51393 TCATCTGTAAGACCTACAGTGTATGATGTTTTCAAAAA
131 TCATCTATAAGACCTACAGTGCAGGATGTTTTCAAAAA
51431 CCTCCAGTGT
Statistics
Matches: 157, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
197 157 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (197 bp):
ACCTTCGGGTCATCCATAAGACCTACAATGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTG
ATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTACATGATGTTCTCAAAACCTTCGGG
TCATCTATAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
AA
Found at i:51632 original size:3 final size:3
Alignment explanation
Indices: 51617--51677 Score: 68
Period size: 3 Copynumber: 20.0 Consensus size: 3
51607 ATTTTTAATC
* * * *
51617 TTA TTA ATA TTA TTA TTA TTA TTA ATA TATA TTA ATA TTA ATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
*
51663 ATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
51678 ATTACAAATA
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:53123 original size:26 final size:26
Alignment explanation
Indices: 53058--53124 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
53048 TTTATTTGCA
*
53058 ATATTATTTTATTATTACTTTTTGAT
1 ATATTTTTTTATTATTACTTTTTGAT
**
53084 ATATTTTTAAATTATTACTTTCATT-AT
1 ATATTTTTTTATTATTACTTT--TTGAT
53111 -TATTTTTTTATTAT
1 ATATTTTTTTATTAT
53125 CTTAGTCATA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
26 30 0.88
27 2 0.06
28 2 0.06
ACGTcount: A:0.28, C:0.04, G:0.01, T:0.66
Consensus pattern (26 bp):
ATATTTTTTTATTATTACTTTTTGAT
Found at i:53392 original size:2 final size:2
Alignment explanation
Indices: 53385--53413 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
53375 ATCCTACTTT
53385 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
53414 TTACTGCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:60737 original size:237 final size:237
Alignment explanation
Indices: 60322--60790 Score: 929
Period size: 237 Copynumber: 2.0 Consensus size: 237
60312 CCCACTTTTC
60322 AGCCTCGGCATAGATATTAGCCAAGAGCAGGTAATATCCGGTATTTTCCTGATCTAGCTTGAAGA
1 AGCCTCGGCATAGATATTAGCCAAGAGCAGGTAATATCCGGTATTTTCCTGATCTAGCTTGAAGA
60387 CGAGTTCTGCAACTTTCTCGGCTAATTCAACTTCATGGTAAATCCTGCAGCCACAAAGCAAAGAT
66 CGAGTTCTGCAACTTTCTCGGCTAATTCAACTTCATGGTAAATCCTGCAGCCACAAAGCAAAGAT
*
60452 CCCCAGATTGTGGCATCTGGTGCAATAGGCATGGTTTCGATGAATTCATATGCCTTCAGAAGATT
131 CCCCAGATTGTGGCATCTGGTGCAATAGGCATGGTTTCGATGAATTCATATGCCTTCAAAAGATT
60517 ACTGTTCCGAGAAAGAAGATCTACCATGCAGGCATAGATATT
196 ACTGTTCCGAGAAAGAAGATCTACCATGCAGGCATAGATATT
60559 AGCCTCGGCATAGATATTAGCCAAGAGCAGGTAATATCCGGTATTTTCCTGATCTAGCTTGAAGA
1 AGCCTCGGCATAGATATTAGCCAAGAGCAGGTAATATCCGGTATTTTCCTGATCTAGCTTGAAGA
60624 CGAGTTCTGCAACTTTCTCGGCTAATTCAACTTCATGGTAAATCCTGCAGCCACAAAGCAAAGAT
66 CGAGTTCTGCAACTTTCTCGGCTAATTCAACTTCATGGTAAATCCTGCAGCCACAAAGCAAAGAT
60689 CCCCAGATTGTGGCATCTGGTGCAATAGGCATGGTTTCGATGAATTCATATGCCTTCAAAAGATT
131 CCCCAGATTGTGGCATCTGGTGCAATAGGCATGGTTTCGATGAATTCATATGCCTTCAAAAGATT
60754 ACTGTTCCGAGAAAGAAGATCTACCATGCAGGCATAG
196 ACTGTTCCGAGAAAGAAGATCTACCATGCAGGCATAG
60791 TGTTCCAATT
Statistics
Matches: 231, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
237 231 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (237 bp):
AGCCTCGGCATAGATATTAGCCAAGAGCAGGTAATATCCGGTATTTTCCTGATCTAGCTTGAAGA
CGAGTTCTGCAACTTTCTCGGCTAATTCAACTTCATGGTAAATCCTGCAGCCACAAAGCAAAGAT
CCCCAGATTGTGGCATCTGGTGCAATAGGCATGGTTTCGATGAATTCATATGCCTTCAAAAGATT
ACTGTTCCGAGAAAGAAGATCTACCATGCAGGCATAGATATT
Found at i:62221 original size:25 final size:25
Alignment explanation
Indices: 62187--62238 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
62177 TTGCGTACTC
62187 ACTCACCATAAAATTCCACAAATAA
1 ACTCACCATAAAATTCCACAAATAA
62212 ACTCACCATAAAATTCCACAAATAA
1 ACTCACCATAAAATTCCACAAATAA
62237 AC
1 AC
62239 ATTCTTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (25 bp):
ACTCACCATAAAATTCCACAAATAA
Found at i:66323 original size:21 final size:20
Alignment explanation
Indices: 66283--66324 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
66273 CCAACTTACA
*
66283 ATGCATTATGAACCATTATT
1 ATGCATTATCAACCATTATT
*
66303 ATGCATTATACAACTATTATT
1 ATGCATTAT-CAACCATTATT
66324 A
1 A
66325 GTTGTATGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.40
Consensus pattern (20 bp):
ATGCATTATCAACCATTATT
Found at i:66892 original size:11 final size:11
Alignment explanation
Indices: 66876--66909 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
66866 ACTCAACGTA
66876 TAATTAAAAAT
1 TAATTAAAAAT
66887 TAATTAAAAAT
1 TAATTAAAAAT
66898 TAATTAAAAAT
1 TAATTAAAAAT
66909 T
1 T
66910 TAAAGATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TAATTAAAAAT
Found at i:66920 original size:23 final size:22
Alignment explanation
Indices: 66876--66929 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
66866 ACTCAACGTA
**
66876 TAATTAAAAATTAATTAAAAAT
1 TAATTAAAAATTAAAGAAAAAT
*
66898 TAATTAAAAATTTAAAGATAAAT
1 TAATTAAAAA-TTAAAGAAAAAT
*
66921 TATTTAAAA
1 TAATTAAAA
66930 TAAAGGGTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (22 bp):
TAATTAAAAATTAAAGAAAAAT
Found at i:85208 original size:21 final size:20
Alignment explanation
Indices: 85168--85209 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
85158 CCAACTTACA
*
85168 ATGCATTATGAACCATTATT
1 ATGCATTATCAACCATTATT
*
85188 ATGCATTATACAACTATTATT
1 ATGCATTAT-CAACCATTATT
85209 A
1 A
85210 GTTGTATGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.40
Consensus pattern (20 bp):
ATGCATTATCAACCATTATT
Found at i:85713 original size:2 final size:2
Alignment explanation
Indices: 85706--85755 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
85696 GTTTGATGGA
85706 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85748 AT AT AT AT
1 AT AT AT AT
85756 CTACAGCGCT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:89082 original size:17 final size:18
Alignment explanation
Indices: 89060--89105 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
89050 AGATAAAAAT
89060 AAAATAAAACAAAAT-AA
1 AAAATAAAACAAAATGAA
* **
89077 AAAATAAAACGATGTGAA
1 AAAATAAAACAAAATGAA
89095 AAAATAAAACA
1 AAAATAAAACA
89106 CATTACCTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.74, C:0.07, G:0.07, T:0.13
Consensus pattern (18 bp):
AAAATAAAACAAAATGAA
Found at i:89433 original size:29 final size:30
Alignment explanation
Indices: 89388--89449 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
89378 TAAATGCAAA
* *
89388 AAATTAAATGCTAG-AAATTAAAAGGACTG
1 AAATAAAATGCTAGAAAATTAAAAGGACAG
*
89417 AAATAAAATG-TAGGAAAATTAAAGGGACAG
1 AAATAAAATGCTA-GAAAATTAAAAGGACAG
89447 AAA
1 AAA
89450 AATAAAGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 2 0.07
29 10 0.36
30 16 0.57
ACGTcount: A:0.56, C:0.05, G:0.19, T:0.19
Consensus pattern (30 bp):
AAATAAAATGCTAGAAAATTAAAAGGACAG
Found at i:89498 original size:15 final size:14
Alignment explanation
Indices: 89478--89509 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
89468 AAAGTGCTGG
89478 AAAAATAAATAAAAT
1 AAAAATAAAT-AAAT
89493 AAAAATAAATAAAT
1 AAAAATAAATAAAT
89507 AAA
1 AAA
89510 TTGCATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAAATAAATAAAT
Found at i:89618 original size:30 final size:32
Alignment explanation
Indices: 89558--89631 Score: 107
Period size: 30 Copynumber: 2.3 Consensus size: 32
89548 TAGAATAAAG
89558 TGTTAGTAAGAACAATAAAAATAAAAAGTTAGAA
1 TGTTAGTAAGAACAAT-AAAAT-AAAAGTTAGAA
*
89592 TGTTAGTATGAACAAT-AAAT-AAAGTTAGAA
1 TGTTAGTAAGAACAATAAAATAAAAGTTAGAA
89622 TGTTAGTAAG
1 TGTTAGTAAG
89632 TTAGAAAGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
30 19 0.50
32 4 0.11
34 15 0.39
ACGTcount: A:0.51, C:0.03, G:0.18, T:0.28
Consensus pattern (32 bp):
TGTTAGTAAGAACAATAAAATAAAAGTTAGAA
Found at i:89634 original size:16 final size:16
Alignment explanation
Indices: 89613--89643 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
89603 ACAATAAATA
*
89613 AAGTTAGAATGTTAGT
1 AAGTTAGAAAGTTAGT
89629 AAGTTAGAAAGTTAG
1 AAGTTAGAAAGTTAG
89644 CAGTTAGTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.26, T:0.32
Consensus pattern (16 bp):
AAGTTAGAAAGTTAGT
Found at i:89835 original size:125 final size:121
Alignment explanation
Indices: 89645--89958 Score: 425
Period size: 125 Copynumber: 2.5 Consensus size: 121
89635 GAAAGTTAGC
* *
89645 AGTTAGTGGTTAGTAGAGTCCGAACCATAATAATGTGAATCTTATCCCGGATTGGGTCACCACAA
1 AGTTAGT-GTTAGCAGAGTCCGAACCATAATAATGTG-ATCTTATCCCGGATTGAGTCACCACAA
* *
89710 GGTCAAATCGAATAATGCAAA-CGAATATATAAAAATAAAATAAAATAAATAAAATGAAAA
64 GGTCAAATAGAATAATGCAAATCGAA-ATATAAAAATAAAAT-AAA-AAATAAAATAAAAA
* * *
89770 AGTTAGTAGTTAGCAGAGTCTGAACCATAATAATGTAGATTTTACCCCGGATTGAGTCACCACAA
1 AGTTAGT-GTTAGCAGAGTCCGAACCATAATAATGT-GATCTTATCCCGGATTGAGTCACCACAA
* *
89835 GGTCGAATAGAATAATGCAAATGGAAATATAAAAATAAAATAAAAAATAAAATAAAAA
64 GGTCAAATAGAATAATGCAAATCGAAATATAAAAATAAAATAAAAAATAAAATAAAAA
* *
89893 AGTTAGTGTTTAGCAGAGTCCAAACCATAATAATGTGGATCTTATCCCGGA-TCAGATCACCACA
1 AGTTAGTG-TTAGCAGAGTCCGAACCATAATAATGT-GATCTTATCCCGGATTGAG-TCACCACA
89957 AG
63 AG
89959 ATCGAGTAAT
Statistics
Matches: 169, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
122 4 0.02
123 67 0.40
124 3 0.02
125 91 0.54
126 4 0.02
ACGTcount: A:0.45, C:0.14, G:0.17, T:0.24
Consensus pattern (121 bp):
AGTTAGTGTTAGCAGAGTCCGAACCATAATAATGTGATCTTATCCCGGATTGAGTCACCACAAGG
TCAAATAGAATAATGCAAATCGAAATATAAAAATAAAATAAAAAATAAAATAAAAA
Found at i:89882 original size:12 final size:12
Alignment explanation
Indices: 89859--89893 Score: 61
Period size: 12 Copynumber: 2.8 Consensus size: 12
89849 ATGCAAATGG
89859 AAATATAAAAATA
1 AAATA-AAAAATA
89872 AAATAAAAAATA
1 AAATAAAAAATA
89884 AAATAAAAAA
1 AAATAAAAAA
89894 GTTAGTGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (12 bp):
AAATAAAAAATA
Found at i:89990 original size:123 final size:121
Alignment explanation
Indices: 89645--89994 Score: 352
Period size: 125 Copynumber: 2.8 Consensus size: 121
89635 GAAAGTTAGC
* * * *
89645 AGTTAGTGGTTAGTAGAGTCCGAACCATAATAATGTGAATCTTATCCCGGATTGGGTCACCACAA
1 AGTTAGT-GTTAGCAGAGTCCGAACCATAATAATGTGGATCTTATCCCGGA-TAGATCACCACAA
* * ** *
89710 GGTCAAATCGAATAATGCAAA-CGAATATATAAAAATAAAATAAAATAAATAAAATGAAAA
64 GGTCGAAT-GAATAA-GGAAATAAAATA-ATAAAAATAAAATAAAATAAATAAAATAAAAA
* * * * *
89770 AGTTAGTAGTTAGCAGAGTCTGAACCATAATAATGTAGATTTTACCCCGGATTGAGTCACCACAA
1 AGTTAGT-GTTAGCAGAGTCCGAACCATAATAATGTGGATCTTATCCCGGATAGA-TCACCACAA
* *
89835 GGTCGAATAGAATAATGCAAATGGAAAT-ATAAAAATAAAAT-AAA-AAATAAAATAAAAA
64 GGTCGAAT-GAATAA-GGAAAT-AAAATAATAAAAATAAAATAAAATAAATAAAATAAAAA
*
89893 AGTTAGTGTTTAGCAGAGTCCAAACCATAATAATGTGGATCTTATCCCGGATCAGATCACCACAA
1 AGTTAGTG-TTAGCAGAGTCCGAACCATAATAATGTGGATCTTATCCCGGAT-AGATCACCACAA
* * *
89958 GATCGAGT-AATAAGAGAAATAATAATAA-ATAAATAAA
64 GGTCGAATGAATAAG-GAAATAA-AATAATAAAAATAAA
89995 TAATGGTTAG
Statistics
Matches: 192, Mismatches: 25, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
120 2 0.01
121 20 0.10
122 2 0.01
123 73 0.38
124 7 0.04
125 85 0.44
127 3 0.02
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.24
Consensus pattern (121 bp):
AGTTAGTGTTAGCAGAGTCCGAACCATAATAATGTGGATCTTATCCCGGATAGATCACCACAAGG
TCGAATGAATAAGGAAATAAAATAATAAAAATAAAATAAAATAAATAAAATAAAAA
Done.