genome.fa.s2802.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002802.1 Hibiscus syriacus cultivar Beakdansim tig00005767_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118359

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14929--14960	15	2.1	15	100	0	64	28	15	6	50	1.68
15250--15283	2	17.0	2	100	0	68	50	0	0	50	1.00
17577--17867	5	58.2	5	97	1	539	20	0	19	59	1.40
21109--21157	18	2.7	19	70	17	50	71	0	12	16	1.14
31569--31603	17	2.1	17	100	0	70	5	28	11	54	1.59
31872--31915	22	2.0	23	100	0	74	27	0	13	59	1.35
34139--34170	14	2.3	14	94	0	55	62	6	3	28	1.34
34147--34187	14	2.8	15	85	10	50	58	2	9	29	1.43
35160--35190	15	2.0	16	93	6	55	16	6	6	70	1.29
36130--36174	21	2.1	21	83	0	54	31	31	24	13	1.93
41098--41157	21	2.9	21	97	0	111	33	26	25	15	1.95
42252--42280	13	2.1	14	93	6	51	62	10	6	20	1.50
42765--42816	23	2.4	21	80	6	68	19	19	21	40	1.92
43588--43631	22	2.0	22	91	8	72	72	0	0	27	0.85
43598--43629	16	2.0	16	93	0	55	71	0	0	28	0.86
43842--44127	102	2.8	102	87	1	421	41	13	14	31	1.84
43950--44028	37	2.2	37	81	6	90	40	16	15	27	1.88
44068--44163	37	2.8	33	78	12	111	40	9	13	36	1.77
43975--44228	135	1.9	138	80	6	311	41	12	14	30	1.84
44414--44579	38	4.6	36	67	12	106	38	10	20	30	1.87
44405--44579	73	2.4	73	84	3	230	40	10	20	28	1.86
44643--44682	20	2.0	20	100	0	80	30	0	35	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44646--44690	20	2.2	20	92	0	72	33	2	33	31	1.70
44740--44779	18	2.2	19	86	4	55	42	2	15	40	1.60
45402--45486	26	3.4	24	82	9	93	50	1	15	32	1.51
46043--46075	14	2.3	15	89	5	50	9	15	0	75	1.03
46033--46079	20	2.4	19	80	16	51	8	14	0	76	1.01
51122--51154	2	16.5	2	100	0	66	48	0	0	51	1.00
51608--51718	34	3.3	34	97	0	213	40	24	14	20	1.90
52298--52936	262	2.4	260	85	4	827	36	13	10	39	1.80
60892--60923	12	2.7	12	100	0	64	59	6	9	25	1.52
62537--62719	5	36.6	5	100	0	366	60	0	0	39	0.97
67822--67928	54	2.0	54	84	0	142	30	17	14	36	1.91
74337--74389	21	2.5	22	73	8	58	35	16	13	33	1.88
78335--78386	17	2.7	20	77	20	65	30	11	0	57	1.34
79796--79850	2	27.5	2	100	0	110	49	0	0	50	1.00
80196--80224	13	2.1	14	93	6	51	41	0	0	58	0.98
80422--80472	21	2.5	20	78	12	59	52	0	5	41	1.25
80428--80481	21	2.5	21	81	6	63	51	0	3	44	1.19
80920--80984	14	4.8	14	78	21	59	26	0	23	50	1.49
80920--80984	13	4.8	13	80	17	62	26	0	23	50	1.49
81023--81055	14	2.3	15	89	5	50	51	3	3	42	1.32
83627--83772	57	2.5	57	79	8	154	40	13	5	41	1.67
83800--84001	97	2.1	97	86	7	277	44	7	7	40	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83877--83957	39	2.1	39	90	0	126	41	8	11	38	1.71
83919--84103	102	1.8	102	81	6	232	45	9	6	38	1.62
84081--84409	174	1.9	174	81	7	409	41	11	8	38	1.72
84010--84410	58	6.9	58	78	7	354	42	11	8	37	1.71
84591--84652	33	1.9	33	93	3	108	48	11	9	30	1.71
93505--93541	20	1.9	18	89	10	56	59	0	0	40	0.97
94732--94857	14	9.7	14	69	16	83	57	18	13	11	1.65
94732--94863	24	5.2	24	74	10	129	56	18	13	11	1.66
94756--94844	27	3.4	27	78	9	121	57	16	13	12	1.66
94732--94863	51	2.6	51	98	0	255	56	18	13	11	1.66
94771--94853	37	2.2	37	82	4	96	57	18	12	12	1.64
94784--94891	37	2.9	38	80	4	103	56	16	14	12	1.67
94871--94909	10	3.9	10	82	0	51	56	10	15	17	1.66
95141--95220	40	2.0	40	85	9	108	38	12	11	37	1.79

Tables:   1

The End!