Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002804.1 Hibiscus syriacus cultivar Beakdansim tig00005771_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 124072
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Found at i:10194 original size:14 final size:15
Alignment explanation
Indices: 10167--10195 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10157 TATAATGGTT
10167 TTTATTTTTGTTATA
1 TTTATTTTTGTTATA
10182 TTTATTTTT-TTATA
1 TTTATTTTTGTTATA
10196 GAAAGCAGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTATTTTTGTTATA
Found at i:11043 original size:13 final size:13
Alignment explanation
Indices: 11025--11054 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
11015 AAATTTTACC
11025 CAAAAAAAAAAAA
1 CAAAAAAAAAAAA
*
11038 CAAAAACAAAAAA
1 CAAAAAAAAAAAA
11051 CAAA
1 CAAA
11055 GTAATAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (13 bp):
CAAAAAAAAAAAA
Found at i:13316 original size:24 final size:24
Alignment explanation
Indices: 13284--13357 Score: 139
Period size: 24 Copynumber: 3.1 Consensus size: 24
13274 GTATGGACAC
*
13284 AAGGGAATGTATCCTCTCGAATTT
1 AAGGGAATGTATCCTCTCGAATTG
13308 AAGGGAATGTATCCTCTCGAATTG
1 AAGGGAATGTATCCTCTCGAATTG
13332 AAGGGAATGTATCCTCTCGAATTG
1 AAGGGAATGTATCCTCTCGAATTG
13356 AA
1 AA
13358 CTCGATCCGT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (24 bp):
AAGGGAATGTATCCTCTCGAATTG
Found at i:15748 original size:13 final size:12
Alignment explanation
Indices: 15725--15782 Score: 54
Period size: 11 Copynumber: 5.0 Consensus size: 12
15715 CAAATTAAAG
15725 CAAAGAGAAAAAA
1 CAAA-AGAAAAAA
15738 TCAAAAGAAAAAA
1 -CAAAAGAAAAAA
15751 -ACAAAG-AAAAA
1 CA-AAAGAAAAAA
15762 CAAAAG--AAAA
1 CAAAAGAAAAAA
15772 C-AAAGAAAAAA
1 CAAAAGAAAAAA
15783 AACCCATCCA
Statistics
Matches: 40, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
9 4 0.10
10 5 0.12
11 14 0.35
12 5 0.12
13 8 0.20
14 4 0.10
ACGTcount: A:0.79, C:0.09, G:0.10, T:0.02
Consensus pattern (12 bp):
CAAAAGAAAAAA
Found at i:15762 original size:10 final size:10
Alignment explanation
Indices: 15747--15781 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
15737 ATCAAAAGAA
15747 AAAAACAAAG
1 AAAAACAAAG
15757 AAAAACAAA-
1 AAAAACAAAG
15766 AGAAAACAAAG
1 A-AAAACAAAG
15777 AAAAA
1 AAAAA
15782 AAACCCATCC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 1 0.04
10 21 0.91
11 1 0.04
ACGTcount: A:0.83, C:0.09, G:0.09, T:0.00
Consensus pattern (10 bp):
AAAAACAAAG
Found at i:15765 original size:23 final size:23
Alignment explanation
Indices: 15732--15785 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
15722 AAGCAAAGAG
*
15732 AAAAAATCAAAAGAAAA-AAACA
1 AAAAAAACAAAAGAAAACAAACA
*
15754 AAGAAAAACAAAAGAAAACAAAGA
1 AA-AAAAACAAAAGAAAACAAACA
15778 AAAAAAAC
1 AAAAAAAC
15786 CCATCCAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 2 0.07
23 20 0.71
24 6 0.21
ACGTcount: A:0.81, C:0.09, G:0.07, T:0.02
Consensus pattern (23 bp):
AAAAAAACAAAAGAAAACAAACA
Found at i:18887 original size:33 final size:33
Alignment explanation
Indices: 18845--18908 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
18835 CACTTTGAAA
18845 TTTTTGAAACAAAATT-GATCTCACTTGAGATTT
1 TTTTTGAAACAAAATTCG-TCTCACTTGAGATTT
* *
18878 TTTTTGAAACAAACTTCGTCTCGCTTGAGAT
1 TTTTTGAAACAAAATTCGTCTCACTTGAGAT
18909 AGTTTCCTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (33 bp):
TTTTTGAAACAAAATTCGTCTCACTTGAGATTT
Found at i:19017 original size:36 final size:35
Alignment explanation
Indices: 18977--19055 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 35
18967 TTGAGATTGT
18977 TTTCTCTAAAAAGAAATTTTGTTTCT-CTTGAGACAA
1 TTTCTCTAAAAAGAAA-TTT-TTTCTACTTGAGACAA
** *
19013 TTTCTCTTGAAATAAATTTTTTCTAGCTTGAGACAA
1 TTTCTCTAAAAAGAAATTTTTTCTA-CTTGAGACAA
19049 TTTCTCT
1 TTTCTCT
19056 TGAAACACAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
34 5 0.13
35 3 0.08
36 30 0.79
ACGTcount: A:0.29, C:0.15, G:0.10, T:0.46
Consensus pattern (35 bp):
TTTCTCTAAAAAGAAATTTTTTCTACTTGAGACAA
Found at i:19271 original size:67 final size:65
Alignment explanation
Indices: 19190--19343 Score: 182
Period size: 67 Copynumber: 2.3 Consensus size: 65
19180 TGAAATAAAT
* * * *
19190 TTTGTCTCGCTTGAGACAGTTTCTCTTGAAAAATAAACCTTTGAGATTGTCTCTCTCTAAACAAA
1 TTTGTCTCACTTGAGACAATTTCTCTTGAAAAATAAACCTTTGAGATTGTCTATCTCAAAACAAA
* * * ** * *
19255 GTTTCGTCTCATTTGAGATAATTTCTTTTGAAGCATAAGCCTTTGAGATTGTTTATCTCAAAACA
1 -TTT-GTCTCACTTGAGACAATTTCTCTTGAAAAATAAACCTTTGAGATTGTCTATCTCAAAACA
19320 AA
64 AA
*
19322 TTTGTCTCGCTTGAGACAATTT
1 TTTGTCTCACTTGAGACAATTT
19344 TCCTCGAAAC
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
65 16 0.22
66 6 0.08
67 51 0.70
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (65 bp):
TTTGTCTCACTTGAGACAATTTCTCTTGAAAAATAAACCTTTGAGATTGTCTATCTCAAAACAAA
Found at i:19445 original size:101 final size:101
Alignment explanation
Indices: 19311--19496 Score: 277
Period size: 101 Copynumber: 1.8 Consensus size: 101
19301 GATTGTTTAT
*
19311 CTCAAAACAAATTTGTCTCGCTTGAGACAATTTT-CCTCGAAACACAAATTTTGAAATTGTTTCA
1 CTCAAAACAAATTTGTCTCGCTAGAGACAATTTTCCCTCGAAACACAAATTTTGAAA-TGTTTCA
* *
19375 TTTGAAAC-AAAATTGATCTCGCTTGATATTATTTTC
65 CTCGAAACAAAAATTGATCTCGCTTGATATTATTTTC
* * *
19411 CTCAAAACAAATTTCGTCTCGCTAGAGATAATTTTCCCTTGAAACATAAATTTTGAAATGTTTCA
1 CTCAAAACAAATTT-GTCTCGCTAGAGACAATTTTCCCTCGAAACACAAATTTTGAAATGTTTCA
*
19476 CTCGAAACAAAAATTTATCTC
65 CTCGAAACAAAAATTGATCTC
19497 ACCTGAGATA
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
100 14 0.18
101 31 0.41
102 31 0.41
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (101 bp):
CTCAAAACAAATTTGTCTCGCTAGAGACAATTTTCCCTCGAAACACAAATTTTGAAATGTTTCAC
TCGAAACAAAAATTGATCTCGCTTGATATTATTTTC
Found at i:20135 original size:136 final size:136
Alignment explanation
Indices: 19719--20165 Score: 506
Period size: 139 Copynumber: 3.2 Consensus size: 136
19709 CCAGACTCAT
* * * * * *
19719 TCAACGCGAAGGAACCATGTTATCTTCAAATTA-TCCTAAAGATGGCTAGACCTCTTCATCACGA
1 TCAACACGAAGGAACCGTGTTATCTCCAAATTATTCCTAAAGAAGGCTAGACGTCCTCATCACGA
* * *
19783 AGGAACATTGTCGTCCACCGACCAGATCTCCTCAACGTGAAGGATCAGTGTCATCCCCAGGTAAT
66 AGGAA-A-TGTCATCCACCGACCAGATCTCCTCAACGTGAAGGA-AAGTGTCATCCTCAGGTAAT
*
19848 CAGA-TTTC
128 CAGACTTCC
* * * *
19856 TACATCACGAAGGAACCGTGTTTTATCCAAATTATCCCTAAAGAAGGCTAGACGTCCTCATCACG
1 T-CAACACGAAGGAACCGTGTTATCTCCAAATTATTCCTAAAGAAGGCTAGACGTCCTCATCACG
* ** * *
19921 AAGGAACAATGTCATCCACTGACCAGATCTCCTCAACGCAAAGGAACAGTATCATCCTCAGGCAA
65 AAGG-A-AATGTCATCCACCGACCAGATCTCCTCAACGTGAAGGAA-AGTGTCATCCTCAGGTAA
19986 TCAGACTTCC
127 TCAGACTTCC
* *
19996 TCAACACGAAGGAACCGTGTTATCTCCAAATTATTCCTAAAGACGGCTAGACGTCCTCATCACCA
1 TCAACACGAAGGAACCGTGTTATCTCCAAATTATTCCTAAAGAAGGCTAGACGTCCTCATCACGA
* * **
20061 A-GAAATGTCATCCACCGACCAAATCTCCTCAACATGAAGGAGAAGTGTCATCCTCAATTAA-CT
66 AGGAAATGTCATCCACCGACCAGATCTCCTCAACGTGAAGGA-AAGTGTCATCCTCAGGTAATC-
20124 AGACTTCC
129 AGACTTCC
** ** **
20132 TCAACGTGAAGGAATTGTGTTATCTTTAAATTAT
1 TCAACACGAAGGAACCGTGTTATCTCCAAATTAT
20166 CCAGATTGAT
Statistics
Matches: 262, Mismatches: 40, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
135 1 0.00
136 83 0.32
137 3 0.01
138 27 0.10
139 141 0.54
140 6 0.02
141 1 0.00
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (136 bp):
TCAACACGAAGGAACCGTGTTATCTCCAAATTATTCCTAAAGAAGGCTAGACGTCCTCATCACGA
AGGAAATGTCATCCACCGACCAGATCTCCTCAACGTGAAGGAAAGTGTCATCCTCAGGTAATCAG
ACTTCC
Found at i:20619 original size:16 final size:16
Alignment explanation
Indices: 20600--20635 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
20590 CACTAACCGT
*
20600 TAACTTTTCTAACAGC
1 TAACATTTCTAACAGC
*
20616 TAACATTTCTAACTGC
1 TAACATTTCTAACAGC
20632 TAAC
1 TAAC
20636 CACTATCCGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (16 bp):
TAACATTTCTAACAGC
Found at i:21442 original size:5 final size:5
Alignment explanation
Indices: 21432--21487 Score: 51
Period size: 5 Copynumber: 10.8 Consensus size: 5
21422 TATTATCTTG
* *
21432 TTTTA TTTTA TTTTA TTTTA TCTCGTTC TATT- TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA T-T--TTA TTTTA TTTTA TTTTA TTTTA
*
21479 TTATA TTTT
1 TTTTA TTTT
21488 TGTCTTTAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
4 3 0.07
5 35 0.83
6 1 0.02
8 3 0.07
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:21485 original size:22 final size:22
Alignment explanation
Indices: 21442--21488 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
21432 TTTTATTTTA
* *
21442 TTTTATTTTATCTCGTTCTATT
1 TTTTATTTTATCTCATTATATT
* *
21464 TTTTATTTTATTTTATTATATT
1 TTTTATTTTATCTCATTATATT
21486 TTT
1 TTT
21489 GTCTTTAACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTATTTTATCTCATTATATT
Found at i:25174 original size:2 final size:2
Alignment explanation
Indices: 25167--25219 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
25157 AGTGCAACCA
25167 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25209 AT AT AT AT AT A
1 AT AT AT AT AT A
25220 AACCATCACT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:28844 original size:31 final size:31
Alignment explanation
Indices: 28809--28875 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
28799 TTGGTAATTG
*
28809 GTTTTAAAATACA-TAAGATATGGTCACTTTC
1 GTTTTAAAATA-ATTAAGATATAGTCACTTTC
* **
28840 GTTTTTATTTAATTAAGATATAGTCACTTTC
1 GTTTTAAAATAATTAAGATATAGTCACTTTC
28871 GTTTT
1 GTTTT
28876 TATTTACTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 1 0.03
31 30 0.97
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.48
Consensus pattern (31 bp):
GTTTTAAAATAATTAAGATATAGTCACTTTC
Found at i:28876 original size:31 final size:31
Alignment explanation
Indices: 28822--28881 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
28812 TTAAAATACA
*
28822 TAAGATATGGTCACTTTCGTTTTTATTTAAT
1 TAAGATATAGTCACTTTCGTTTTTATTTAAT
28853 TAAGATATAGTCACTTTCGTTTTTATTTA
1 TAAGATATAGTCACTTTCGTTTTTATTTA
28882 CTTGAGATGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.52
Consensus pattern (31 bp):
TAAGATATAGTCACTTTCGTTTTTATTTAAT
Found at i:29058 original size:20 final size:18
Alignment explanation
Indices: 29013--29062 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 18
29003 TTTTAAATAC
*
29013 ATTTTAACATAAAATATAT
1 ATTTTAA-ATAAAATAAAT
29032 ATTTTAAATGAAAATAAAT
1 ATTTTAAAT-AAAATAAAT
29051 ATTTTTAAATAA
1 A-TTTTAAATAA
29063 GTTAATAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 2 0.07
19 18 0.64
20 8 0.29
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (18 bp):
ATTTTAAATAAAATAAAT
Found at i:29100 original size:23 final size:23
Alignment explanation
Indices: 29058--29120 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 23
29048 AATATTTTTA
29058 AATAAGTTAATAATAAAAAAATATTT
1 AATAAGTTAAT-AT--AAAAATATTT
29084 AATAAGTTAATATAAAAATATTT
1 AATAAGTTAATATAAAAATATTT
** *
29107 TTTAAGTTGATATA
1 AATAAGTTAATATA
29121 TGTAAAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 21 0.62
25 2 0.06
26 11 0.32
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (23 bp):
AATAAGTTAATATAAAAATATTT
Found at i:29110 original size:26 final size:27
Alignment explanation
Indices: 29047--29111 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 27
29037 AAATGAAAAT
*
29047 AAATATTTTTAAATAAGTTAATAATAA
1 AAATATTTTTTAATAAGTTAATAATAA
* *
29074 AAA-AATATTTAATAAGTTAAT-ATAA
1 AAATATTTTTTAATAAGTTAATAATAA
29099 AAATATTTTTTAA
1 AAATATTTTTTAA
29112 GTTGATATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 7 0.22
26 22 0.69
27 3 0.09
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (27 bp):
AAATATTTTTTAATAAGTTAATAATAA
Found at i:30867 original size:3 final size:3
Alignment explanation
Indices: 30859--30892 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
30849 AAACAACGAT
30859 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
30893 ATTCAAGTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:33577 original size:25 final size:24
Alignment explanation
Indices: 33549--33595 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
33539 ATTGAAATAT
*
33549 CCAAAATGCTCTTAAACCCTAAAGG
1 CCAAAATACTC-TAAACCCTAAAGG
*
33574 CCAAAATACTCTAAACTCTAAA
1 CCAAAATACTCTAAACCCTAAA
33596 TTGACAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.45, C:0.28, G:0.06, T:0.21
Consensus pattern (24 bp):
CCAAAATACTCTAAACCCTAAAGG
Found at i:37998 original size:17 final size:18
Alignment explanation
Indices: 37968--38001 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
37958 ATTTACGTAC
37968 TAAAATAGATATTATTTT
1 TAAAATAGATATTATTTT
37986 TAAAATA-ATATTATTT
1 TAAAATAGATATTATTT
38002 GTAATTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
TAAAATAGATATTATTTT
Found at i:38197 original size:34 final size:34
Alignment explanation
Indices: 38154--38221 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
38144 TATCTTTGTT
*
38154 TCCTTAATTGTTGCCTAATTGATCTCTTGTAATC
1 TCCTTAATTGTAGCCTAATTGATCTCTTGTAATC
38188 TCCTTAATTGTAGCCTAATTGATCTCTTGTAATC
1 TCCTTAATTGTAGCCTAATTGATCTCTTGTAATC
38222 ATGTATATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.46
Consensus pattern (34 bp):
TCCTTAATTGTAGCCTAATTGATCTCTTGTAATC
Found at i:42813 original size:34 final size:34
Alignment explanation
Indices: 42770--42837 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
42760 TATCTTTGTT
*
42770 TCCTTAATTGTTGCCTAATTGATCTCTTGTAATC
1 TCCTTAATTGTAGCCTAATTGATCTCTTGTAATC
42804 TCCTTAATTGTAGCCTAATTGATCTCTTGTAATC
1 TCCTTAATTGTAGCCTAATTGATCTCTTGTAATC
42838 ATGTATATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.12, T:0.46
Consensus pattern (34 bp):
TCCTTAATTGTAGCCTAATTGATCTCTTGTAATC
Found at i:42901 original size:3 final size:3
Alignment explanation
Indices: 42893--42923 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
42883 TCTCTTTCAG
42893 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
42924 GGCAAGACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:44750 original size:16 final size:17
Alignment explanation
Indices: 44717--44751 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
44707 TTCAACCGAG
*
44717 TTGAGTTTAAGAATTTT
1 TTGAGTTCAAGAATTTT
44734 TTGAGTTCAAG-ATTTT
1 TTGAGTTCAAGAATTTT
44750 TT
1 TT
44752 AGCTTAAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.26, C:0.03, G:0.17, T:0.54
Consensus pattern (17 bp):
TTGAGTTCAAGAATTTT
Found at i:45277 original size:3 final size:3
Alignment explanation
Indices: 45258--45360 Score: 50
Period size: 3 Copynumber: 34.3 Consensus size: 3
45248 GTTTAGTTAA
* * * * *
45258 TAT TAT TAA TAT CAT TAT TACT TAT AAT TAT CA- TAT TA- TAT CAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * **
45302 TAT TAC TAC AAT AAT TAT TAT TGAC TAT GGT CTAT -AT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT -TAT TAT TAT TAT TAT
45348 TAT TAT TAT TAT T
1 TAT TAT TAT TAT T
45361 TGCCTACTGT
Statistics
Matches: 74, Mismatches: 20, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
2 5 0.07
3 63 0.85
4 6 0.08
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.53
Consensus pattern (3 bp):
TAT
Found at i:45323 original size:29 final size:28
Alignment explanation
Indices: 45258--45323 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 28
45248 GTTTAGTTAA
*
45258 TATTATTAATATCATTATTACTTATAAT
1 TATTATTAATATCATTATTACTAATAAT
45286 TATCATATT-ATATCATTATTACTACAATAAT
1 TAT--TATTAATATCATTATTACT--AATAAT
45317 TATTATT
1 TATTATT
45324 GACTATGGTC
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
28 3 0.09
29 18 0.55
30 4 0.12
31 8 0.24
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (28 bp):
TATTATTAATATCATTATTACTAATAAT
Found at i:52052 original size:17 final size:17
Alignment explanation
Indices: 51997--52105 Score: 80
Period size: 17 Copynumber: 6.5 Consensus size: 17
51987 TCATGTATCT
*
51997 TTTCTTTTATTGTACTA
1 TTTCTTTTACTGTACTA
* * *
52014 TATCTTTTATTATACTGA
1 TTTCTTTTACTGTACT-A
*
52032 -TTCTTTTACTG-AGTTA
1 TTTCTTTTACTGTA-CTA
* *
52048 TTTC-TATATTGTACTA
1 TTTCTTTTACTGTACTA
* **
52064 TTTCATTTACTGTGTTA
1 TTTCTTTTACTGTACTA
*
52081 TTACTTTTACTGTACTA
1 TTTCTTTTACTGTACTA
52098 TTTCTTTT
1 TTTCTTTT
52106 GTTTTATTTT
Statistics
Matches: 69, Mismatches: 18, Indels: 10
0.71 0.19 0.10
Matches are distributed among these distances:
16 13 0.19
17 55 0.80
18 1 0.01
ACGTcount: A:0.20, C:0.13, G:0.07, T:0.60
Consensus pattern (17 bp):
TTTCTTTTACTGTACTA
Found at i:52081 original size:33 final size:34
Alignment explanation
Indices: 52036--52101 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 34
52026 TACTGATTCT
* *
52036 TTTACTGAGTTATTTC-TATATTGTACTATTTCA
1 TTTACTGAGTTATTACTTATACTGTACTATTTCA
* *
52069 TTTACTGTGTTATTACTTTTACTGTACTATTTC
1 TTTACTGAGTTATTACTTATACTGTACTATTTC
52102 TTTTGTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 14 0.50
34 14 0.50
ACGTcount: A:0.21, C:0.14, G:0.09, T:0.56
Consensus pattern (34 bp):
TTTACTGAGTTATTACTTATACTGTACTATTTCA
Found at i:54530 original size:22 final size:22
Alignment explanation
Indices: 54500--54541 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
54490 GTACACTTGT
*
54500 TAAATTATTAATTAAATAAATA
1 TAAAATATTAATTAAATAAATA
* *
54522 TAAAATATTCATTTAATAAA
1 TAAAATATTAATTAAATAAA
54542 AAATTACAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAAATATTAATTAAATAAATA
Found at i:64254 original size:160 final size:161
Alignment explanation
Indices: 63962--64257 Score: 450
Period size: 160 Copynumber: 1.8 Consensus size: 161
63952 GTTTTAACGT
* * * *
63962 CTATAAAGTGTCGATACTTTATAAAAATGTATCAATCCACAACGATATAACAGGTAAAAATATGA
1 CTATAAAATGTCGATACTTTATAAAAATATATCAATCCACAACCATATAACACGTAAAAATATGA
** * * * * *
64027 CAAAACCGATATTGAAATGATAAAACCGGTAAAGCGCTACCGGATATATTTAAAGTGTCGGTACT
66 CAAAACCGATATCAAAATGATAAAACCGATAAAGCACTACCAGATATATTGAAAGTGTCGATACT
64092 TTAATATAAGTATTGACACTTTGTAAAGCGC
131 TTAATATAAGTATTGACACTTTGTAAAGCGC
*
64123 CTATAAAATGTCGATACTTTATAAAAATATATCGATCCACAACCATATAACACGT-AAAATATGA
1 CTATAAAATGTCGATACTTTATAAAAATATATCAATCCACAACCATATAACACGTAAAAATATGA
* * *
64187 TAAAATCGGTATCAAAATGATAAAACCGATAAAGCACTACCAGATATATTGAAAGTGTCGATACT
66 CAAAACCGATATCAAAATGATAAAACCGATAAAGCACTACCAGATATATTGAAAGTGTCGATACT
64252 TTAATA
131 TTAATA
64258 AGTACTTGTA
Statistics
Matches: 120, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
160 70 0.58
161 50 0.42
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (161 bp):
CTATAAAATGTCGATACTTTATAAAAATATATCAATCCACAACCATATAACACGTAAAAATATGA
CAAAACCGATATCAAAATGATAAAACCGATAAAGCACTACCAGATATATTGAAAGTGTCGATACT
TTAATATAAGTATTGACACTTTGTAAAGCGC
Found at i:66469 original size:21 final size:21
Alignment explanation
Indices: 66445--66486 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
66435 GATAATCAAA
66445 AGTCGAAGAGAAACTTGAGAG
1 AGTCGAAGAGAAACTTGAGAG
* *
66466 AGTCGAAGATACACTTGAGAG
1 AGTCGAAGAGAAACTTGAGAG
66487 GAATAAGGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.12, G:0.31, T:0.17
Consensus pattern (21 bp):
AGTCGAAGAGAAACTTGAGAG
Found at i:68398 original size:19 final size:19
Alignment explanation
Indices: 68371--68419 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
68361 AATGTAGGGT
*
68371 TAATATTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
68390 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
68409 TAATTTTGTAT
1 TAATTTTGTAT
68420 GTGAATGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.53
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:68757 original size:19 final size:19
Alignment explanation
Indices: 68735--68775 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
68725 GTTAATGTTA
68735 TATAAGATTTATAATTTTG
1 TATAAGATTTATAATTTTG
*
68754 TATACGATTTATAATTTTG
1 TATAAGATTTATAATTTTG
68773 TAT
1 TAT
68776 GTGAATGTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.34, C:0.02, G:0.10, T:0.54
Consensus pattern (19 bp):
TATAAGATTTATAATTTTG
Found at i:68816 original size:356 final size:356
Alignment explanation
Indices: 68163--68872 Score: 1348
Period size: 356 Copynumber: 2.0 Consensus size: 356
68153 TCGTTTGTGT
* * * *
68163 TAAAATTGTTAAAAGTCGTAGATTGAATGTTGTGGTTTACAATACTTAGCGTTCTGACAATTTGA
1 TAAAATTGTTAAAAGTCGGAGATTAAATGATGTGGTTTACAATACTTAACGTTCTGACAATTTGA
68228 ATATAGGTTGTTGGAGAGTGGGATCGATCACCAATATTAAACGATCTCGTAAGCCACAATCAAAA
66 ATATAGGTTGTTGGAGAGTGGGATCGATCACCAATATTAAACGATCTCGTAAGCCACAATCAAAA
* *
68293 TCAACGAAGACAGGAGATAACAAAAGCTGCCATGATACACAAGAATAACAAAAGGATGCAATGAT
131 TCAACGAAGACAGGAGATAACAAAAGCTGCCATGATACACAAAAATAACAAAAAGATGCAATGAT
*
68358 GTAAATGTAGGGTTAATATTGTATAAGATTTATAATTTTGTATACGATTTATAATTTTGTATGTG
196 GTAAATGTAGGGTTAATATTATATAAGATTTATAATTTTGTATACGATTTATAATTTTGTATGTG
68423 AATGTAATTATGTATGAGATGAGAAAAGTTAGCAGTAGGTTGTTGTACATGTTTCTTATACATAT
261 AATGTAATTATGTATGAGATGAGAAAAGTTAGCAGTAGGTTGTTGTACATGTTTCTTATACATAT
68488 TAAGAGTCATGTTGATACGTACGATATATGG
326 TAAGAGTCATGTTGATACGTACGATATATGG
68519 TAAAATTGTTAAAAGTCGGAGATTAAATGATGTGGTTTACAATACTTAACGTTCTGACAATTTGA
1 TAAAATTGTTAAAAGTCGGAGATTAAATGATGTGGTTTACAATACTTAACGTTCTGACAATTTGA
68584 ATATAGGTTGTTGGAGAGTGGGATCGATCACCAATATTAAACGATCTCGTAAGCCACAATCAAAA
66 ATATAGGTTGTTGGAGAGTGGGATCGATCACCAATATTAAACGATCTCGTAAGCCACAATCAAAA
68649 TCAACGAAGACAGGAGATAACAAAAGCTGCCATGATACACAAAAATAACAAAAAGATGCAATGAT
131 TCAACGAAGACAGGAGATAACAAAAGCTGCCATGATACACAAAAATAACAAAAAGATGCAATGAT
*
68714 GTAAATGTAGGGTTAATGTTATATAAGATTTATAATTTTGTATACGATTTATAATTTTGTATGTG
196 GTAAATGTAGGGTTAATATTATATAAGATTTATAATTTTGTATACGATTTATAATTTTGTATGTG
68779 AATGTAATTATGTATGAGATGAGAAAAGTTAGCAGTAGGTTGTTGTACATGTTTCTTATACATAT
261 AATGTAATTATGTATGAGATGAGAAAAGTTAGCAGTAGGTTGTTGTACATGTTTCTTATACATAT
68844 TAAGAGTCATGTTGATACGTACGATATAT
326 TAAGAGTCATGTTGATACGTACGATATAT
68873 AGAGATTGTT
Statistics
Matches: 346, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
356 346 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (356 bp):
TAAAATTGTTAAAAGTCGGAGATTAAATGATGTGGTTTACAATACTTAACGTTCTGACAATTTGA
ATATAGGTTGTTGGAGAGTGGGATCGATCACCAATATTAAACGATCTCGTAAGCCACAATCAAAA
TCAACGAAGACAGGAGATAACAAAAGCTGCCATGATACACAAAAATAACAAAAAGATGCAATGAT
GTAAATGTAGGGTTAATATTATATAAGATTTATAATTTTGTATACGATTTATAATTTTGTATGTG
AATGTAATTATGTATGAGATGAGAAAAGTTAGCAGTAGGTTGTTGTACATGTTTCTTATACATAT
TAAGAGTCATGTTGATACGTACGATATATGG
Found at i:69423 original size:200 final size:200
Alignment explanation
Indices: 69017--73157 Score: 6538
Period size: 200 Copynumber: 20.8 Consensus size: 200
69007 GTAAGCATAT
*
69017 GTGTCGATCCATATATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * *
69082 GGTAATTTTTCAATGTAACTGGTATAAATTTACCGGTTTGAGGAGAG-ATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
*
69146 ATCGACATTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
69211 ATAAA
196 ATAAA
* * * *
69216 GTGTCGATCTATTTATAAAAAATATCGATCCCATAAACATCAAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * *
69281 GGTAAATTTTCAATGTAACCGGTATAAATATACTGGTTTTACGAGAGAATAGGTGTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* **
69346 ATC-AAACCTTTTTAA-TTTGTTGTCGATACTTTTGGAACAGAATGAATGCCAAAAAGGGTGCAA
131 ATCGACA-CTTTTTAATTTTG-TGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAA
69409 CCATAAA
194 CCATAAA
**
69416 GTGTCGATATATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * * *
69481 GGTAATTTTTCATTGTAACCAGTATAAATATACCGATTTTATGAGAGAATAGGTCTACAATATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
69546 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
69611 ATAAA
196 ATAAA
** *
69616 GTGTCGATATATTTATAAAAAGTATCGATCCTAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* *
69681 GGTAATTTTTCAATGTAACCGGTATAAATACACCGGTTTTACGAGATAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* *
69746 ATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAAT-CCAAAAAAGGGTGAAAC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCC-AAAAAGGGTGCAAC
69810 CATAAA
195 CATAAA
* *
69816 GTGTCGATCTATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATACTGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * *
69881 GGTAATTTTTCAATTGTAA-CGGTATAAATTTACTGGTTTTACGAGAGAATAAGTCTACAACATG
66 GGTAATTTTTCAA-TGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATG
* *
69945 TATCGACACTTTTTAATTTTGTGTCG-CACTTTTGGTTCAGAATGAATGCCAAAAAGGGTGCAAC
130 TATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAAC
70009 CATAAA
195 CATAAA
*
70015 GTGTCGATCCATTTATAAAATGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * *
70080 GGTAATTTTTCAATGTAACCGGTATAAATATATCGGTTTTACGAGATAATAGGTTTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* * **
70145 ATCGACACTTTTTAATTTTGTGTCGATACATTTAGAACAGAATGAATGCCAAAAAGGGTGCAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
70210 ATAAA
196 ATAAA
** * * * *
70215 GTGTCGATATATTTATAAAAAGTATCGATCCAAGGAACATTGAAAACCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* *
70280 GGTAATTTTTCAATATAACCGGTATAAATATACCGATTTTACGAGAGAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
*
70345 ATCGACACTTTTTAATTTTGTGTCGATACGTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
70410 ATAAA
196 ATAAA
*
70415 GTGTCGATCCATTTATAAAAAGTATCGATCACAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * *
70480 GGTAA-TTTTCAATGTAACTGGTATAAATATACCGGTTTTACGAGATAATATGTCTAAAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* * * *
70544 ATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAGT-CCAAAAAGGGTGAAACA
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
70608 ATAAA
196 ATAAA
70613 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * *
70678 GGTAATTTTTCAATGTAACCAGTATAAATTTACCGGTTTTACGAGAGAATAAGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
*
70743 ATCGACACTTTTTAATTTTGTGTCG-CACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
70807 ATAAA
196 ATAAA
*
70812 GTGTCGATCCATTTATAAAAAATATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * *
70877 GGTAATTTTTCAATGTAACCGGTATAAATATATCAGTTTTACGAGATAATAGGTTTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* * * * * *
70942 ATCGACACTTTTTAATTTTGTCTCAATACTTTTAGTCTAGAATGAATCCCAAAAAGGGTGCAATC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
71007 ATAAA
196 ATAAA
*
71012 GTGTCGATCCATTTATAAAAAGTATCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * *
71077 TGTAATTTTTCAATGTAACCGGTATAAATTTATCGGTTTTACGAGAGAATAGGTCTATAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* * **
71142 ATCAAAACTTTTTAATTTTGTGTCGATACTTTTAATCCAGAATGAATGCCAAAAAGGGTGCAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
71207 ATAAA
196 ATAAA
* *
71212 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATTGAAACCCATAAGTATAATGTACTA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* *
71277 GGTAATTTTTCAATGTAACCGATATAAATATACTGGTTTTACGAGAGAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
*
71342 ATCGACACTTTTTAATTTTGTGTCGATACTTTTTGTCCAGAATGAATGCCAAAAAGGGTGCAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
71407 ATAAA
196 ATAAA
*
71412 GTGTCGATCCATTTATAAAAAGTATCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
*
71477 GGTAAATTTTT-AATGTAACCGATATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATG
66 GGT-AATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATG
* *
71541 TATC-AAACCTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGAAA
130 TATCGACA-CTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAA
71605 CCATAAA
194 CCATAAA
* *
71612 GTGTCGATCCATTTATAAAAAGTATCGAT-CCAGAAACATTGAAACCCATAAGTATAAAGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* *
71676 GGTAATTTTTCAATGTAACCGGTATAAATATATCGGTTTTACGAGATAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
71741 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAAT-CCTAAAAAGGGTGCAAC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCC-AAAAAGGGTGCAAC
71805 CATAAA
195 CATAAA
* * * *
71811 GTGTCAATCCATTTATAAAAAGTATCGATACCAGAAACATCGAAACCCATAAGTATTATATAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * *
71876 GGTAATTTTTCAATGTAACAGGTATAAATTTACCGGTTTTACGAGAGAATAGGTCTATAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* * *
71941 ATCCACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAATGGGTACAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
72006 ATAAA
196 ATAAA
* * *
72011 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCAAAACTCATAAGTATAATGTACTA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* *
72076 GGTAATTTTTCAATGTAACCGATATAAATATACCGGTTTTACGAGAAAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
72141 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
72206 ATAAA
196 ATAAA
*
72211 GTGTCGATCCATTTATAAAAAGTATCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * *
72276 GGTAAATTTTT-AATGTAACC-G-ATATA-ATAGCGGTTTTGCGAGAGAATAGGTATACAACATG
66 GGT-AATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATG
* *
72337 TATCGA-ACCTTTTTAATTTTGTGTCGATACTTTTGGTCCAAAATGAATGCCAAAAATGGTGCAA
130 TATCGACA-CTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAA
72401 CCATAAA
194 CCATAAA
* * * * *
72408 GTGTCGTTCCATTTATAAAAAATATCGATCCCAGAAGCATTGAAACCAATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * * *
72473 AGTAATTTTT-AAGGTAACCGATATAAATATACCGGTTTTACGAGATAATAGGTTTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* * * *
72537 ATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCATAATGAATCCCAAAAAGGGTACAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
72602 ATAAA
196 ATAAA
** *
72607 GTGTTAATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATATTGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * * * *
72672 GATAATTTTTCAATATATCCGGTATAAATTTACCAGTTTTATGAGAGAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
**
72737 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAACCA---T--AA-C
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
72796 --AAA
196 ATAAA
* * *
72799 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAATATCAAAACCTATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * *
72864 GGTAATTTTTCAATATAACCGGTATAAATATACCGGTTATACGAGATAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* * * * *
72929 ATCAACACTTTTTAATTTTGTCTCGATACTTTTGATCCAGAATGAATCCCAAAACGGGTGCAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
72994 ATAAA
196 ATAAA
72999 GTGTCGATCCATTTATAAAAA-TATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * *
73063 GGTAAATTTTCAATGTAACCGGTATAAATATACCAGTTTTATGAGAGAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* *
73128 ATCGACACTTTTTAATTTTGTATTGATACT
131 ATCGACACTTTTTAATTTTGTGTCGATACT
73158 AATTTAAATA
Statistics
Matches: 3620, Mismatches: 287, Indels: 70
0.91 0.07 0.02
Matches are distributed among these distances:
192 168 0.05
194 1 0.00
195 3 0.00
196 16 0.00
197 162 0.04
198 131 0.04
199 1090 0.30
200 2022 0.56
201 27 0.01
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.31
Consensus pattern (200 bp):
GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
ATAAA
Found at i:70154 original size:599 final size:600
Alignment explanation
Indices: 69017--73157 Score: 6524
Period size: 599 Copynumber: 6.9 Consensus size: 600
69007 GTAAGCATAT
*
69017 GTGTCGATCCATATATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * *
69082 GGTAATTTTTCAATGTAACTGGTATAAATTTACCGGTTTGAGGAGAG-ATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
*
69146 ATCGACATTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
* * * *
69211 ATAAAGTGTCGATCTATTTATAAAAAATATCGATCCCATAAACATCAAAACCCATAAGTATAATG
196 ATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATG
* *
69276 TAATAGGTAAATTTTCAATGTAACCGGTATAAATATACTGGTTTTACGAGAGAATAGGTGTACAA
261 TAATAGGTAATTTTTCAATGTAACCGGTATAAATATACTGGTTTTACGAGAGAATAGGTCTACAA
* **
69341 CATGTATC-AAACCTTTTTAA-TTTGTTGTCGATACTTTTGGAACAGAATGAATGCCAAAAAGGG
326 CATGTATCGACA-CTTTTTAATTTTG-TGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGG
**
69404 TGCAACCATAAAGTGTCGATATATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAG
389 TGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAG
* * * *
69469 TATAATGTAATAGGTAATTTTTCATTGTAACCAGTATAAATATACCGATTTTATGAGAGAATAGG
454 TATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGG
*
69534 TCTACAATATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAA
519 TCTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAA
69599 AAGGGTGCAACCATAAA
584 AAGGGTGCAACCATAAA
** *
69616 GTGTCGATATATTTATAAAAAGTATCGATCCTAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* *
69681 GGTAATTTTTCAATGTAACCGGTATAAATACACCGGTTTTACGAGATAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* *
69746 ATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAAT-CCAAAAAAGGGTGAAAC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCC-AAAAAGGGTGCAAC
* *
69810 CATAAAGTGTCGATCTATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATACT
195 CATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAAT
* *
69875 GTAATAGGTAATTTTTCAATTGTAA-CGGTATAAATTTACTGGTTTTACGAGAGAATAAGTCTAC
260 GTAATAGGTAATTTTTCAA-TGTAACCGGTATAAATATACTGGTTTTACGAGAGAATAGGTCTAC
* *
69939 AACATGTATCGACACTTTTTAATTTTGTGTCG-CACTTTTGGTTCAGAATGAATGCCAAAAAGGG
324 AACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGG
*
70003 TGCAACCATAAAGTGTCGATCCATTTATAAAATGTATCGATCCCAGAAACATCGAAACCCATAAG
389 TGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAG
* *
70068 TATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATATCGGTTTTACGAGATAATAGG
454 TATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGG
* * * **
70133 TTTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACATTTAGAACAGAATGAATGCCAAA
519 TCTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAA
70198 AAGGGTGCAACCATAAA
584 AAGGGTGCAACCATAAA
** * * * *
70215 GTGTCGATATATTTATAAAAAGTATCGATCCAAGGAACATTGAAAACCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* *
70280 GGTAATTTTTCAATATAACCGGTATAAATATACCGATTTTACGAGAGAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
*
70345 ATCGACACTTTTTAATTTTGTGTCGATACGTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
*
70410 ATAAAGTGTCGATCCATTTATAAAAAGTATCGATCACAGAAACATCGAAACCCATAAGTATAATG
196 ATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATG
* * * * *
70475 TAATAGGTAA-TTTTCAATGTAACTGGTATAAATATACCGGTTTTACGAGATAATATGTCTAAAA
261 TAATAGGTAATTTTTCAATGTAACCGGTATAAATATACTGGTTTTACGAGAGAATAGGTCTACAA
* *
70539 CATGTATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAGT-CCAAAAAGGGTG
326 CATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTG
* *
70603 AAACAATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTA
391 CAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTA
* * *
70668 TAATGTAATAGGTAATTTTTCAATGTAACCAGTATAAATTTACCGGTTTTACGAGAGAATAAGTC
456 TAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTC
*
70733 TACAACATGTATCGACACTTTTTAATTTTGTGTCG-CACTTTTGGTCCAGAATGAATGCCAAAAA
521 TACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAA
70797 GGGTGCAACCATAAA
586 GGGTGCAACCATAAA
*
70812 GTGTCGATCCATTTATAAAAAATATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * *
70877 GGTAATTTTTCAATGTAACCGGTATAAATATATCAGTTTTACGAGATAATAGGTTTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* * * * * *
70942 ATCGACACTTTTTAATTTTGTCTCAATACTTTTAGTCTAGAATGAATCCCAAAAAGGGTGCAATC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
*
71007 ATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCATAAACATCGAAACCCATAAGTATAATG
196 ATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATG
* * *
71072 TAATATGTAATTTTTCAATGTAACCGGTATAAATTTA-TCGGTTTTACGAGAGAATAGGTCTATA
261 TAATAGGTAATTTTTCAATGTAACCGGTATAAATATACT-GGTTTTACGAGAGAATAGGTCTACA
* * **
71136 ACATGTATCAAAACTTTTTAATTTTGTGTCGATACTTTTAATCCAGAATGAATGCCAAAAAGGGT
325 ACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGT
*
71201 GCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATTGAAACCCATAAGT
390 GCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGT
* * *
71266 ATAATGTACTAGGTAATTTTTCAATGTAACCGATATAAATATACTGGTTTTACGAGAGAATAGGT
455 ATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGT
*
71331 CTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTTGTCCAGAATGAATGCCAAAA
520 CTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAA
71396 AGGGTGCAACCATAAA
585 AGGGTGCAACCATAAA
*
71412 GTGTCGATCCATTTATAAAAAGTATCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
*
71477 GGTAAATTTTT-AATGTAACCGATATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATG
66 GGT-AATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATG
* *
71541 TATC-AAACCTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGAAA
130 TATCGACA-CTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAA
*
71605 CCATAAAGTGTCGATCCATTTATAAAAAGTATCGAT-CCAGAAACATTGAAACCCATAAGTATAA
194 CCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAA
* *
71669 AGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATA-TCGGTTTTACGAGATAATAGGTCTA
259 TGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACT-GGTTTTACGAGAGAATAGGTCTA
71733 CAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAAT-CCTAAAAAG
323 CAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCC-AAAAAG
* *
71797 GGTGCAACCATAAAGTGTCAATCCATTTATAAAAAGTATCGATACCAGAAACATCGAAACCCATA
387 GGTGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATA
* * * *
71862 AGTATTATATAATAGGTAATTTTTCAATGTAACAGGTATAAATTTACCGGTTTTACGAGAGAATA
452 AGTATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATA
* *
71927 GGTCTATAACATGTATCCACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCA
517 GGTCTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCA
* *
71992 AAATGGGTACAACCATAAA
582 AAAAGGGTGCAACCATAAA
* * *
72011 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCAAAACTCATAAGTATAATGTACTA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* *
72076 GGTAATTTTTCAATGTAACCGATATAAATATACCGGTTTTACGAGAAAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
72141 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
*
72206 ATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCATAAACATCGAAACCCATAAGTATAATG
196 ATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATG
* * * *
72271 TAATAGGTAAATTTTT-AATGTAACCGATAT-AATA-GC-GGTTTTGCGAGAGAATAGGTATACA
261 TAATAGGT-AATTTTTCAATGTAACCGGTATAAATATACTGGTTTTACGAGAGAATAGGTCTACA
* *
72332 ACATGTATCGA-ACCTTTTTAATTTTGTGTCGATACTTTTGGTCCAAAATGAATGCCAAAAATGG
325 ACATGTATCGACA-CTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGG
* * * * *
72396 TGCAACCATAAAGTGTCGTTCCATTTATAAAAAATATCGATCCCAGAAGCATTGAAACCAATAAG
389 TGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAG
* * * *
72461 TATAATGTAATAAGTAATTTTT-AAGGTAACCGATATAAATATACCGGTTTTACGAGATAATAGG
454 TATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGG
* * * *
72525 TTTACAACATGTATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCATAATGAATCCCAAA
519 TCTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAA
*
72590 AAGGGTACAACCATAAA
584 AAGGGTGCAACCATAAA
** *
72607 GTGTTAATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATATTGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * * * *
72672 GATAATTTTTCAATATATCCGGTATAAATTTACCAGTTTTATGAGAGAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
**
72737 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAACCA---T--AA-C
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
* * *
72796 --AAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAATATCAAAACCTATAAGTATAATG
196 ATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATG
* * * *
72859 TAATAGGTAATTTTTCAATATAACCGGTATAAATATACCGGTTATACGAGATAATAGGTCTACAA
261 TAATAGGTAATTTTTCAATGTAACCGGTATAAATATACTGGTTTTACGAGAGAATAGGTCTACAA
* * * * *
72924 CATGTATCAACACTTTTTAATTTTGTCTCGATACTTTTGATCCAGAATGAATCCCAAAACGGGTG
326 CATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTG
72989 CAACCATAAAGTGTCGATCCATTTATAAAAA-TATCGATCCCAGAAACATCGAAACCCATAAGTA
391 CAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTA
* * *
73053 TAATGTAATAGGTAAATTTTCAATGTAACCGGTATAAATATACCAGTTTTATGAGAGAATAGGTC
456 TAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTC
* *
73118 TACAACATGTATCGACACTTTTTAATTTTGTATTGATACT
521 TACAACATGTATCGACACTTTTTAATTTTGTGTCGATACT
73158 AATTTAAATA
Statistics
Matches: 3262, Mismatches: 252, Indels: 64
0.91 0.07 0.02
Matches are distributed among these distances:
587 7 0.00
588 79 0.02
589 4 0.00
590 50 0.02
591 186 0.06
592 1 0.00
593 1 0.00
596 282 0.09
597 447 0.14
598 343 0.11
599 1327 0.41
600 510 0.16
601 25 0.01
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.31
Consensus pattern (600 bp):
GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
GGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
ATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATG
TAATAGGTAATTTTTCAATGTAACCGGTATAAATATACTGGTTTTACGAGAGAATAGGTCTACAA
CATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTG
CAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTA
TAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAGAATAGGTC
TACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAA
GGGTGCAACCATAAA
Found at i:71759 original size:799 final size:798
Alignment explanation
Indices: 69017--73157 Score: 6608
Period size: 799 Copynumber: 5.2 Consensus size: 798
69007 GTAAGCATAT
*
69017 GTGTCGATCCATATATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * * *
69082 GGTAATTTTTCAATGTAACTGGTATAAATTTACCGGTTTGAGGAGAG-ATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGATATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
*
69146 ATCGACATTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
131 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
* * *
69211 ATAAAGTGTCGATCTATTTATAAAAAATATCGATCCCATAAACATCAAAACCCATAAGTATAATG
196 ATAAAGTGTCGATCCATTTATAAAAAATATCGATCCCAGAAACATCGAAACCCATAAGTATAATG
* * *
69276 TAATAGGTAAATTTTCAATGTAACCGGTATAAATATA-CTGGTTTTACGAGAGAATAGGTGTACA
261 TAATAGGTAATTTTTCAATGTAACCGGTATAAATATATC-GGTTTTACGAGATAATAGGTTTACA
* * *
69340 ACATGTATC-AAACCTTTTTAA-TTTGTTGTCGATACTTTTGGAACAGAATGAATGCCAAAAAGG
325 ACATGTATCGACA-CTTTTTAATTTTG-TGTCGATACTTTTGG-TCAGAATGAATCCCAAAAAGG
**
69403 GTGCAACCATAAAGTGTCGATATATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAA
387 GTGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAA
* * * * *
69468 GTATAATGTAATAGGTAATTTTTCATTGTAACCAGTATAAATATACCGATTTTATGAGAGAATAG
452 GTATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATTTACCGGTTTTACGAGAGAATAG
*
69533 GTCTACAATATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAA
517 GTCTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAA
** *
69598 AAAGGGTGCAACCATAAAGTGTCGATATATTTATAAAAAGTATCGATCCTAGAAACATCGAAACC
582 AAAGGGTGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACC
*
69663 CATAAGTATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATACACCGGTTTTACGAGAT
647 CATAAGTATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGAT
69728 AATAGGTCTACAACATGTATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAAT
712 AATAGGTCTACAACATGTATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAAT
*
69793 CCAAAAAAGGGTGAAACCATAAA
777 CC-AAAAAGGGTGCAACCATAAA
* *
69816 GTGTCGATCTATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATACTGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * *
69881 GGTAATTTTTCAATTGTAA-CGGTATAAATTTACTGGTTTTACGAGAGAATAAGTCTACAACATG
66 GGTAATTTTTCAA-TGTAACCGATATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATG
* *
69945 TATCGACACTTTTTAATTTTGTGTCG-CACTTTTGGTTCAGAATGAATGCCAAAAAGGGTGCAAC
130 TATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAAC
**
70009 CATAAAGTGTCGATCCATTTATAAAATGTATCGATCCCAGAAACATCGAAACCCATAAGTATAAT
195 CATAAAGTGTCGATCCATTTATAAAAAATATCGATCCCAGAAACATCGAAACCCATAAGTATAAT
70074 GTAATAGGTAATTTTTCAATGTAACCGGTATAAATATATCGGTTTTACGAGATAATAGGTTTACA
260 GTAATAGGTAATTTTTCAATGTAACCGGTATAAATATATCGGTTTTACGAGATAATAGGTTTACA
* ** *
70139 ACATGTATCGACACTTTTTAATTTTGTGTCGATACATTTAGAACAGAATGAATGCCAAAAAGGGT
325 ACATGTATCGACACTTTTTAATTTTGTGTCGATAC-TTTTGGTCAGAATGAATCCCAAAAAGGGT
** * * * *
70204 GCAACCATAAAGTGTCGATATATTTATAAAAAGTATCGATCCAAGGAACATTGAAAACCATAAGT
389 GCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGT
* * *
70269 ATAATGTAATAGGTAATTTTTCAATATAACCGGTATAAATATACCGATTTTACGAGAGAATAGGT
454 ATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATTTACCGGTTTTACGAGAGAATAGGT
*
70334 CTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACGTTTGGTCCAGAATGAATGCCAAAA
519 CTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAA
*
70399 AGGGTGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCACAGAAACATCGAAACCCA
584 AGGGTGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCA
*
70464 TAAGTATAATGTAATAGGTAA-TTTTCAATGTAACTGGTATAAATATACCGGTTTTACGAGATAA
649 TAAGTATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGATAA
* * *
70528 TATGTCTAAAACATGTATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAGTCC
714 TAGGTCTACAACATGTATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAATCC
* *
70593 AAAAAGGGTGAAACAATAAA
779 AAAAAGGGTGCAACCATAAA
70613 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* *
70678 GGTAATTTTTCAATGTAACC-AGTATAAATTTACCGGTTTTACGAGAGAATAAGTCTACAACATG
66 GGTAATTTTTCAATGTAACCGA-TATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATG
*
70742 TATCGACACTTTTTAATTTTGTGTCG-CACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAAC
130 TATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAAC
70806 CATAAAGTGTCGATCCATTTATAAAAAATATCGATCCCAGAAACATCGAAACCCATAAGTATAAT
195 CATAAAGTGTCGATCCATTTATAAAAAATATCGATCCCAGAAACATCGAAACCCATAAGTATAAT
*
70871 GTAATAGGTAATTTTTCAATGTAACCGGTATAAATATATCAGTTTTACGAGATAATAGGTTTACA
260 GTAATAGGTAATTTTTCAATGTAACCGGTATAAATATATCGGTTTTACGAGATAATAGGTTTACA
* * *
70936 ACATGTATCGACACTTTTTAATTTTGTCTCAATACTTTTAGTCTAGAATGAATCCCAAAAAGGGT
325 ACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTC-AGAATGAATCCCAAAAAGGGT
* *
71001 GCAATCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCATAAACATCGAAACCCATAAGT
389 GCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGT
* *
71066 ATAATGTAATATGTAATTTTTCAATGTAACCGGTATAAATTTATCGGTTTTACGAGAGAATAGGT
454 ATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATTTACCGGTTTTACGAGAGAATAGGT
* * * **
71131 CTATAACATGTATCAAAACTTTTTAATTTTGTGTCGATACTTTTAATCCAGAATGAATGCCAAAA
519 CTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAA
*
71196 AGGGTGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATTGAAACCCA
584 AGGGTGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCA
* * * *
71261 TAAGTATAATGTACTAGGTAATTTTTCAATGTAACCGATATAAATATACTGGTTTTACGAGAGAA
649 TAAGTATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGATAA
* *
71326 TAGGTCTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTTGTCCAGAATGAATGC
714 TAGGTCTACAACATGTATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAAT-C
71391 CAAAAAGGGTGCAACCATAAA
778 CAAAAAGGGTGCAACCATAAA
*
71412 GTGTCGATCCATTTATAAAAAGTATCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
71477 GGTAAATTTTT-AATGTAACCGATATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATG
66 GGT-AATTTTTCAATGTAACCGATATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATG
* *
71541 TATC-AAACCTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGAAA
130 TATCGACA-CTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAA
* *
71605 CCATAAAGTGTCGATCCATTTATAAAAAGTATCGAT-CCAGAAACATTGAAACCCATAAGTATAA
194 CCATAAAGTGTCGATCCATTTATAAAAAATATCGATCCCAGAAACATCGAAACCCATAAGTATAA
* *
71669 AGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATATCGGTTTTACGAGATAATAGGTCTAC
259 TGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATATCGGTTTTACGAGATAATAGGTTTAC
*
71734 AACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATCCTAAAAAGGG
324 AACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGT-CAGAATGAATCCCAAAAAGGG
* *
71799 TGCAACCATAAAGTGTCAATCCATTTATAAAAAGTATCGATACCAGAAACATCGAAACCCATAAG
388 TGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAG
* * *
71864 TATTATATAATAGGTAATTTTTCAATGTAACAGGTATAAATTTACCGGTTTTACGAGAGAATAGG
453 TATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATTTACCGGTTTTACGAGAGAATAGG
* *
71929 TCTATAACATGTATCCACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAA
518 TCTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAA
* * * *
71994 ATGGGTACAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCAAAACTC
583 AAGGGTGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCC
* * *
72059 ATAAGTATAATGTACTAGGTAATTTTTCAATGTAACCGATATAAATATACCGGTTTTACGAGAAA
648 ATAAGTATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGATA
*
72124 ATAGGTCTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATG
713 ATAGGTCTACAACATGTATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAAT-
72189 CCAAAAAGGGTGCAACCATAAA
777 CCAAAAAGGGTGCAACCATAAA
*
72211 GTGTCGATCCATTTATAAAAAGTATCGATCCCATAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * *
72276 GGTAAATTTTT-AATGTAACCGATAT--A-ATAGCGGTTTTGCGAGAGAATAGGTATACAACATG
66 GGT-AATTTTTCAATGTAACCGATATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATG
* *
72337 TATCGA-ACCTTTTTAATTTTGTGTCGATACTTTTGGTCCAAAATGAATGCCAAAAATGGTGCAA
130 TATCGACA-CTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAA
* * * *
72401 CCATAAAGTGTCGTTCCATTTATAAAAAATATCGATCCCAGAAGCATTGAAACCAATAAGTATAA
194 CCATAAAGTGTCGATCCATTTATAAAAAATATCGATCCCAGAAACATCGAAACCCATAAGTATAA
* * * *
72466 TGTAATAAGTAATTTTT-AAGGTAACCGATATAAATATACCGGTTTTACGAGATAATAGGTTTAC
259 TGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATATCGGTTTTACGAGATAATAGGTTTAC
* *
72530 AACATGTATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCATAATGAATCCCAAAAAGGG
324 AACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGT-CAGAATGAATCCCAAAAAGGG
* **
72595 TACAACCATAAAGTGTTAATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAG
388 TGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAG
* * * * * *
72660 TATATTGTAATAGATAATTTTTCAATATATCCGGTATAAATTTACCAGTTTTATGAGAGAATAGG
453 TATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATTTACCGGTTTTACGAGAGAATAGG
*
72725 TCTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAC
518 TCTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAA
* * * *
72790 CA---T--AA-C--AAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAATATCAAAACCT
583 AAGGGTGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCC
* *
72847 ATAAGTATAATGTAATAGGTAATTTTTCAATATAACCGGTATAAATATACCGGTTATACGAGATA
648 ATAAGTATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGATA
* *
72912 ATAGGTCTACAACATGTATCAACACTTTTTAATTTTGTCTCGATACTTTTGATCCAGAATGAATC
713 ATAGGTCTACAACATGTATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAAT-
*
72977 CCAAAACGGGTGCAACCATAAA
777 CCAAAAAGGGTGCAACCATAAA
72999 GTGTCGATCCATTTATAAAAA-TATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
1 GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
* * * *
73063 GGTAAATTTTCAATGTAACCGGTATAAATATACCAGTTTTATGAGAGAATAGGTCTACAACATGT
66 GGTAATTTTTCAATGTAACCGATATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
* *
73128 ATCGACACTTTTTAATTTTGTATTGATACT
131 ATCGACACTTTTTAATTTTGTGTCGATACT
73158 AATTTAAATA
Statistics
Matches: 3134, Mismatches: 185, Indels: 55
0.93 0.05 0.02
Matches are distributed among these distances:
786 6 0.00
787 58 0.02
788 211 0.07
789 1 0.00
790 58 0.02
791 3 0.00
793 1 0.00
796 419 0.13
797 682 0.22
798 202 0.06
799 1358 0.43
800 135 0.04
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.31
Consensus pattern (798 bp):
GTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATA
GGTAATTTTTCAATGTAACCGATATAAATATACCGGTTTTACGAGAGAATAGGTCTACAACATGT
ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
ATAAAGTGTCGATCCATTTATAAAAAATATCGATCCCAGAAACATCGAAACCCATAAGTATAATG
TAATAGGTAATTTTTCAATGTAACCGGTATAAATATATCGGTTTTACGAGATAATAGGTTTACAA
CATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCAGAATGAATCCCAAAAAGGGTGC
AACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATAAGTAT
AATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATTTACCGGTTTTACGAGAGAATAGGTCT
ACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAG
GGTGCAACCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAGAAACATCGAAACCCATA
AGTATAATGTAATAGGTAATTTTTCAATGTAACCGGTATAAATATACCGGTTTTACGAGATAATA
GGTCTACAACATGTATCGACACTTTTTAATTTTGTCTCGATACTTTTGGTCCAGAATGAATCCAA
AAAGGGTGCAACCATAAA
Found at i:74643 original size:6 final size:6
Alignment explanation
Indices: 74632--74705 Score: 94
Period size: 6 Copynumber: 12.3 Consensus size: 6
74622 CAAGCGGTCA
* * * * *
74632 ATGAAG ATGAAG ATGACG ATGAAG ATGACG ATGATG ATGATG ATGATG
1 ATGATG ATGATG ATGATG ATGATG ATGATG ATGATG ATGATG ATGATG
*
74680 GTGATG ATGATG ATGATG ATGATG AT
1 ATGATG ATGATG ATGATG ATGATG AT
74706 CCAAACAAGT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 62 1.00
ACGTcount: A:0.36, C:0.03, G:0.34, T:0.27
Consensus pattern (6 bp):
ATGATG
Found at i:76210 original size:51 final size:53
Alignment explanation
Indices: 76155--76264 Score: 138
Period size: 51 Copynumber: 2.1 Consensus size: 53
76145 AGAATGGATG
76155 CCAAAAAGGG-TGAACGCACAAAGTGTCGATACATTT-TCAAAGAGTGTCGAT-
1 CCAAAAAGGGTTGAACGCACAAAGTGTCGATACATTTATCAAA-AGTGTCGATC
* * * * *
76206 CC-AAAAGGGTTGCACGCATAAAGTTTCGATACATTTATTAAAAGTGTTGATC
1 CCAAAAAGGGTTGAACGCACAAAGTGTCGATACATTTATCAAAAGTGTCGATC
76258 CCAAAAA
1 CCAAAAA
76265 CATCAAAACC
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
50 7 0.14
51 33 0.66
52 6 0.12
53 4 0.08
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (53 bp):
CCAAAAAGGGTTGAACGCACAAAGTGTCGATACATTTATCAAAAGTGTCGATC
Found at i:76415 original size:252 final size:250
Alignment explanation
Indices: 75972--76459 Score: 662
Period size: 252 Copynumber: 1.9 Consensus size: 250
75962 TAAAGTTTCC
* * *
75972 CATAAAGTGTCGATCCATATATAAAAAGTAGCGACCCCAAAAACATCGAAACCGATAATTATAAT
1 CATAAAGTGTCGATACATATATAAAAAGTAGCGACCCCAAAAACATCAAAACCCATAATTATAAT
* * *
76037 TTAATGGGAAATTTTTCAATGTAACTGGTATAAATATACCGACTTTATGAAAAATAGGTCTACAA
66 ATAATAGGAAATTTTTCAATATAACTGGTATAAATATACCGACTTTATGAAAAATAGGTCTACAA
* * *
76102 CATGTATCGACATTTATCAATATTGTTTCGATACCTTTTTTCCAGAATGGATGCCAAAAAGGGTG
131 CATGTATCGACACTTATCAATATTGTGTCGATACATTTTTTCCAGAATGGATGCCAAAAAGGGTG
76167 AACGCACAAAGTGTCGATACATTTTC-AAAGAGTGTCGATCCAAAAGGGTTGCACG
196 AACGCACAAAGTGTCGATACATTTTCAAAAG-GTGTCGATCCAAAAGGGTTGCACG
* * * * *
76222 CATAAAGTTTCGATACATTTATTAAAAGT-GTTGATCCCAAAAACATCAAAACCCCATAATTATA
1 CATAAAGTGTCGATACATATATAAAAAGTAG-CGACCCCAAAAACATCAAAA-CCCATAATTATA
* * ** *
76286 ATATAATAGGTAATTTTGT-AATATAA-TCGGTATATATATACCGGTTTTATGAGAGAATAGGTC
64 ATATAATAGGAAATTTT-TCAATATAACT-GGTATAAATATACCGACTTTATGA-AAAATAGGTC
* * * *
76349 TATAACATGTATCGACACTTCTTAATATTGTGTCGATA-ATTTTTGTCCATAATGGATGCCAAAA
126 TACAACATGTATCGACACTTATCAATATTGTGTCGATACATTTTT-TCCAGAATGGATGCCAAAA
*
76413 AGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAGGTGTCGATCC
190 AGGGTGAACGCACAAAGTGTCGATACATTTTCAAAAGGTGTCGATCC
76460 TGAAAACATC
Statistics
Matches: 207, Mismatches: 24, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
249 1 0.00
250 43 0.21
251 57 0.28
252 102 0.49
253 4 0.02
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.31
Consensus pattern (250 bp):
CATAAAGTGTCGATACATATATAAAAAGTAGCGACCCCAAAAACATCAAAACCCATAATTATAAT
ATAATAGGAAATTTTTCAATATAACTGGTATAAATATACCGACTTTATGAAAAATAGGTCTACAA
CATGTATCGACACTTATCAATATTGTGTCGATACATTTTTTCCAGAATGGATGCCAAAAAGGGTG
AACGCACAAAGTGTCGATACATTTTCAAAAGGTGTCGATCCAAAAGGGTTGCACG
Found at i:76533 original size:177 final size:177
Alignment explanation
Indices: 76321--76862 Score: 766
Period size: 177 Copynumber: 3.0 Consensus size: 177
76311 ATCGGTATAT
* * *
76321 ATATACCGGTTTTATGAGAGAATAGGTCTATAACATGTATCGACACTTCTTAATATTGTGTCGAT
1 ATATACCGATTTTATGAGAGAATAGGTCTATAACATGTATCAACACTTATTAATATTGTGTCGAT
* *
76386 AATTTTTGTCCATAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAAGG
66 AATTTTTGTCCAGAATGGATGCCAAAAAGGGTGAACGCACAAAGTGTCGATACATTTTCAAAAGG
**
76451 TGTCGATCCTGAAAACATCGAAACCCATAATTATAATGTAATAGGTA
131 TGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTA
* *
76498 ATATACTGATTTTATGAGAGAATAGGTCTATAACATGTATCAACACTATATAAAT-TTGTGTCGA
1 ATATACCGATTTTATGAGAGAATAGGTCTATAACATGTATCAACACT-TATTAATATTGTGTCGA
* *
76562 TACA-TTTTGTCCAGAATGGATGCCAAAAAGGATGAACGCACAAAGTTTCGATACATTTTC-AAA
65 TA-ATTTTTGTCCAGAATGGATGCCAAAAAGGGTGAACGCACAAAGTGTCGATACATTTTCAAAA
76625 GAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAATTTTGTA
129 G-GTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA-G-------GTA
* * *
76683 ATATAACCGCTTTTATGAGAGAATAGGTCTACAACATGTATCAACACTTTTTAATATTGTGTCGA
1 ATAT-ACCGATTTTATGAGAGAATAGGTCTATAACATGTATCAACACTTATTAATATTGTGTCGA
* * * * * *
76748 TACTTTATGTCCAGAATGGATGCCAAAAAGGGTGAACACACAAAGTGTCAATACATTTTTAAAAA
65 TAATTTTTGTCCAGAATGGATGCCAAAAAGGGTGAACGCACAAAGTGTCGATACATTTTCAAAAG
*
76813 GTTTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTA
130 GTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTA
76861 AT
1 AT
76863 TTTTTAATAT
Statistics
Matches: 325, Mismatches: 25, Indels: 29
0.86 0.07 0.08
Matches are distributed among these distances:
176 4 0.01
177 149 0.46
178 12 0.04
185 13 0.04
186 144 0.44
187 3 0.01
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (177 bp):
ATATACCGATTTTATGAGAGAATAGGTCTATAACATGTATCAACACTTATTAATATTGTGTCGAT
AATTTTTGTCCAGAATGGATGCCAAAAAGGGTGAACGCACAAAGTGTCGATACATTTTCAAAAGG
TGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTA
Found at i:76777 original size:186 final size:184
Alignment explanation
Indices: 76319--76875 Score: 792
Period size: 186 Copynumber: 3.0 Consensus size: 184
76309 TAATCGGTAT
* * *
76319 ATATATACCGGTTTTATGAGAGAATAGGTCTATAACATGTATCGACACTTCTTAATATTGTGTCG
1 ATATA-ACCGATTTTATGAGAGAATAGGTCTATAACATGTATCAACACTTTTTAATATTGTGTCG
* * *
76384 ATAATTTTTGTCCATAATGGATGCCAAAAAGGGTGAACGCATAAAGTGTCGATACATTTTCAAAA
65 AT-ACTTTTGTCCAGAATGGATGCCAAAAAGGGTGAACGCACAAAGTGTCGATACATTTTCAAAA
**
76449 GGTGTCGATCCTGAAAACATCGAAACCCATAATTATAATGTAATA-G-------GTA
129 -GTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAATTTTGTA
* * *
76498 ATAT-ACTGATTTTATGAGAGAATAGGTCTATAACATGTATCAACACTATATAA-ATTTGTGTCG
1 ATATAACCGATTTTATGAGAGAATAGGTCTATAACATGTATCAACACTTTTTAATA-TTGTGTCG
* *
76561 ATACATTTTGTCCAGAATGGATGCCAAAAAGGATGAACGCACAAAGTTTCGATACATTTTCAAAG
65 ATAC-TTTTGTCCAGAATGGATGCCAAAAAGGGTGAACGCACAAAGTGTCGATACATTTTCAAA-
76626 AGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAATTTTGTA
128 AGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAATTTTGTA
* *
76683 ATATAACCGCTTTTATGAGAGAATAGGTCTACAACATGTATCAACACTTTTTAATATTGTGTCGA
1 ATATAACCGATTTTATGAGAGAATAGGTCTATAACATGTATCAACACTTTTTAATATTGTGTCGA
* * *
76748 TACTTTATGTCCAGAATGGATGCCAAAAAGGGTGAACACACAAAGTGTCAATACATTTTTAAAAA
66 TACTTT-TGTCCAGAATGGATGCCAAAAAGGGTGAACGCACAAAGTGTCGATACA-TTTTCAAAA
* *
76813 GTTTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAATTTTTTA
129 GTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAATTTTGTA
76869 ATATAAC
1 ATATAAC
76876 TGGTATAAAT
Statistics
Matches: 338, Mismatches: 25, Indels: 23
0.88 0.06 0.06
Matches are distributed among these distances:
176 2 0.01
177 150 0.44
178 2 0.01
179 4 0.01
185 10 0.03
186 162 0.48
187 8 0.02
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (184 bp):
ATATAACCGATTTTATGAGAGAATAGGTCTATAACATGTATCAACACTTTTTAATATTGTGTCGA
TACTTTTGTCCAGAATGGATGCCAAAAAGGGTGAACGCACAAAGTGTCGATACATTTTCAAAAGT
GTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAATTTTGTA
Found at i:79659 original size:200 final size:197
Alignment explanation
Indices: 79259--79984 Score: 799
Period size: 200 Copynumber: 3.6 Consensus size: 197
79249 ACCTAAATAT
* *
79259 GTGTCGATACATTT-TATACAAGTATCGA-CCCAAAAAACATCAAAACCAATAATTATAATGTAA
1 GTGTCGATACATTTAT-TAAAAGTATCGATCCC-AAAAACATCAAAACCGATAATTATAATGTAA
* * *
79322 TAGGTAAATTAACAATGTAACCGGTATAAATATACCGG-TTAATTAGAAAATAGGTCAACATAAT
64 TAGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAAAATAGGTC-ACATAAT
* * * * *
79386 GTATCGACACTTGTGGAATTTGTGTCGATACTTATTGTCTAGGATGAATG-CACAAACGATGTGC
128 GTATCGACACTTGT-AAATTTGTGTCGATACTT-TTGTCCAGAATGAATGCCA-AAAAG-GGTGC
79450 -ACGCATAAA
189 AAC-CATAAA
* *
79459 GTGTCGAAACATTTATTAAAAGTATCGATCCCAAAAACATCAAAACCGATAATTATAATGTATTA
1 GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCAAAACCGATAATTATAATGTAATA
* * *
79524 GGTAAATTTACAATGTAACCGATATAAATATACCGGTTTTATGATAAAATAGGTCAGCATAAAGT
66 GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAAAATAGGTCA-CATAATGT
79589 ATCGACACTTGCTAAATTTGTGTCGATACTTTTGGTCCAGAATGAATGCCAAAAAGGGTGCAACC
130 ATCGACACTTG-TAAATTTGTGTCGATACTTTT-GTCCAGAATGAATGCCAAAAAGGGTGCAACC
79654 ATAAA
193 ATAAA
* * * *
79659 GTGTCGATACATTTATAAAAAGTATCGATCCCAGAAACATCGAAATCC-ATAAGTATAATGTAAT
1 GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATC-AAAACCGATAATTATAATGTAAT
* * * * * *
79723 AGGTAAATTTTCAATGTAACCGGTATAAATATATCGATTTTATGAGAGAATATGTCTAAATAATG
65 AGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAAAATAGGTC-ACATAATG
* * * **
79788 TATCGACACTTTGTTAGTTTGTGTCGATACTTTTTTCCAGAATGAAATATGAATGCCCAACCA-G
129 TATCGACAC-TTGTAAATTTGTGTCGATACTTTTGTCC---A-G--A-ATGAATG-CCAAAAAGG
*
79852 GTGCAAGCATAAA
185 GTGCAACCATAAA
* * * *
79865 GTGTCGATACATTTA--AAATTGTATCGAT-CTAAAAAGCATCGAAACCGATAATAATAATGTAA
1 GTGTCGATACATTTATTAAA-AGTATCGATCCCAAAAA-CATCAAAACCGATAATTATAATGTAA
* * **
79927 TAGGTAAATTTGCAATGTTACCGGTATAAATATACCGG-TTTACTTCGAAAATAGGTCA
64 TAGGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTA-TGAGAAAATAGGTCA
79985 ATATAAGCGC
Statistics
Matches: 452, Mismatches: 51, Indels: 42
0.83 0.09 0.08
Matches are distributed among these distances:
199 3 0.01
200 236 0.52
201 81 0.18
202 4 0.01
203 1 0.00
204 17 0.04
205 70 0.15
206 35 0.08
207 5 0.01
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (197 bp):
GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCAAAACCGATAATTATAATGTAATA
GGTAAATTTACAATGTAACCGGTATAAATATACCGGTTTTATGAGAAAATAGGTCACATAATGTA
TCGACACTTGTAAATTTGTGTCGATACTTTTGTCCAGAATGAATGCCAAAAAGGGTGCAACCATA
AA
Found at i:80092 original size:87 final size:86
Alignment explanation
Indices: 79985--80151 Score: 271
Period size: 87 Copynumber: 1.9 Consensus size: 86
79975 AAATAGGTCA
* *
79985 ATATAAGCGCTACCTTTTACATTATATAAGAGCTACCTAATATGTTATTGTATTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTT
80050 CCGGTTAAATGCATATTTTATT
66 CCGGTTAAATG-ATATTTTATT
* * *
80072 ATATAAGTGCTACCTATTACATTATATAAGTGCTACCTATTATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTT
*
80137 TCGGTTAAATGATAT
66 CCGGTTAAATGATAT
80152 AACATTACCG
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
86 4 0.05
87 70 0.95
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (86 bp):
ATATAAGCGCTACCTATTACATTATATAAGAGCTACCTAATATGTTATTGTACTTGATAATATTT
CCGGTTAAATGATATTTTATT
Found at i:80119 original size:23 final size:23
Alignment explanation
Indices: 80069--80113 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
80059 TGCATATTTT
80069 ATTATATAAGTGCTACCTATTAC
1 ATTATATAAGTGCTACCTATTAC
80092 ATTATATAAGTGCTACCTATTA
1 ATTATATAAGTGCTACCTATTA
80114 TGTTATTGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.40
Consensus pattern (23 bp):
ATTATATAAGTGCTACCTATTAC
Found at i:80189 original size:16 final size:16
Alignment explanation
Indices: 80170--80214 Score: 90
Period size: 16 Copynumber: 2.8 Consensus size: 16
80160 CGATTAAAAT
80170 TTTAACCGGTCACCTG
1 TTTAACCGGTCACCTG
80186 TTTAACCGGTCACCTG
1 TTTAACCGGTCACCTG
80202 TTTAACCGGTCAC
1 TTTAACCGGTCAC
80215 GCCATTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.20, C:0.31, G:0.18, T:0.31
Consensus pattern (16 bp):
TTTAACCGGTCACCTG
Found at i:82237 original size:3 final size:3
Alignment explanation
Indices: 82229--82259 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
82219 AATACTTACA
82229 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
82260 TACAGATCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:83277 original size:31 final size:31
Alignment explanation
Indices: 83239--83361 Score: 169
Period size: 31 Copynumber: 4.0 Consensus size: 31
83229 CCCGAATGAC
* *
83239 CAGTCCATA-GATTCCGAAGAATC-TAGGTAAT
1 CAGTCCATATG-TCCCGAAGAA-CATAGGTAAA
83270 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
83301 CAATCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
* *
83332 CAATTCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
83362 CCCTCGACCC
Statistics
Matches: 86, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
30 1 0.01
31 84 0.98
32 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:83814 original size:19 final size:19
Alignment explanation
Indices: 83790--83835 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
83780 CTTAGCCTTG
83790 CTTTGATTCGATTATAATC
1 CTTTGATTCGATTATAATC
83809 CTTTGATTCGATTATAATC
1 CTTTGATTCGATTATAATC
83828 CTTTGATT
1 CTTTGATT
83836 ATTCCGGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.24, C:0.15, G:0.11, T:0.50
Consensus pattern (19 bp):
CTTTGATTCGATTATAATC
Found at i:87802 original size:31 final size:31
Alignment explanation
Indices: 87779--87886 Score: 191
Period size: 31 Copynumber: 3.5 Consensus size: 31
87769 CATAGATTCT
*
87779 GAAGAATC-TAGGTAATCAGTCCATATGTCCC
1 GAAGAA-CATAGGTAAACAGTCCATATGTCCC
87810 GAAGAACATAGGTAAACAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
87841 GAAGAACATAGGTAAACAGTCCATATGTCCC
1 GAAGAACATAGGTAAACAGTCCATATGTCCC
87872 GAAGAACATAGGTAA
1 GAAGAACATAGGTAA
87887 CCCTCGACCC
Statistics
Matches: 75, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
30 1 0.01
31 74 0.99
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (31 bp):
GAAGAACATAGGTAAACAGTCCATATGTCCC
Found at i:90529 original size:10 final size:10
Alignment explanation
Indices: 90514--90544 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
90504 CAACCATGTA
90514 ATTTTAATTT
1 ATTTTAATTT
90524 ATTTTAATTT
1 ATTTTAATTT
90534 ATTTTAATTT
1 ATTTTAATTT
90544 A
1 A
90545 GCCCCATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTTAATTT
Found at i:97343 original size:134 final size:134
Alignment explanation
Indices: 97103--99944 Score: 2390
Period size: 134 Copynumber: 21.3 Consensus size: 134
97093 AGATAAGAGA
* * * * * *
97103 AACAAGTATGGCTTGATTCAATCTTCCCTAAGTGACAGTTGAATGGATCAAC-TCCCCCAGATCT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * * *
97167 TATATTCCCTCCAGAAGAAGCAAAACAAAATCC-TCTTTTTCAAGATTTTATATTCCCTGTAAGA
66 GATATTCCCTCCAGAAGAAGCAAAAC-AAATCCATCTCTTTCAAGATTTGATATTCCCTG-ATGA
*
97231 CAATGG
129 CAGTGG
* *
97237 AACAAGTCTGCCTCGATTCAATCTTCCCTAAGTGACAGTGGAATGGATCAAC-TCCCCAATATCT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * * * *
97301 GAGATTCCCTCCATAAGAAGCAAAATAGATCCATCTCTTTCAAGATTTGATATTCCCTAGGTGAC
66 GATATTCCCTCCAGAAGAAGCAAAACAAATCCATCTCTTTCAAGATTTGATATTCCCT-GATGAC
*
97366 AATGG
130 AGTGG
* * * * * *
97371 AATAAGTCTACCTCGATTCAATCTTCCCCTGAGTGACAATGAAATGGATCCACGTCTCC-AGATC
1 AACAAGTCTGCCTCGATTCAATCTT-CCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATC
* ** **** *
97435 TGATATTCCCTCCAAAAGAAGCGGAGTTGATCCATCTCTTTCAAGATTTGATATTCCCTAAGTGA
65 TGATATTCCCTCCAGAAGAAGCAAAACAAATCCATCTCTTTCAAGATTTGATATTCCCTGA-TGA
97500 CAGTGG
129 CAGTGG
* * * * * *
97506 AACAAATCTGCC-CTAATTCAATATTCCCTGAGTGATAGTGGAATGGATCCACAT-CCC-----C
1 AACAAGTCTGCCTC-GATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATC
* ** * ** * *
97564 ------TCCCTTCAGAAGAAATAGAACAAATCCCCCTCTTTCAAGATTTGATATTCTCTGTGTGA
65 TGATATTCCCTCCAGAAGAAGCAAAACAAATCCATCTCTTTCAAGATTTGATATTCCCTG-ATGA
*
97623 TAGTGG
129 CAGTGG
** * * * * *
97629 AACAAGTCTATCTCGATTCAATATTCCCTGAGTGATAGTTGAATGGATCAAC-TCCCCCAGATAT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * * * * *
97693 GATATTCCCTCCAAAAGAAATGGAACATATAT-C-TCTCTTTCAAGATTTGATATTCCCTGAGTA
66 GATATTCCCTCCAGAAG-AA-GCAAAACAAATCCATCTCTTTCAAGATTTGATATTCCCTGA-TG
97756 ACAGTGG
128 ACAGTGG
* * * *
97763 AACATGTCTGCCTCGATTCAATCTTTCTTGAGTGACAGTGGAATGGATCAACGT-CCCTAGATCT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * * *
97827 GATATTCCCTCTAGAAGAAG-AGAAACATATCCCTCTCTTTCAAGATTTGATATTCCCTTAGTGA
66 GATATTCCCTCCAGAAGAAGCA-AAACAAATCCATCTCTTTCAAGATTTGATATTCCCTGA-TGA
*
97891 TAGTGG
129 CAGTGG
* * * * * * * * *
97897 AATAAGTCTGGCTCGATTTAATCTTTCCTAAGTGAAAGTGGAATAGATCAAC-TCCCAAAGATAT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * * * * * * *
97961 GATATTCCCTCTAGAAGAAATGGAACATATAT-C-TCTCTTTCAATATTTGATATTCCCTTAGTA
66 GATATTCCCTCCAGAAG-AA-GCAAAACAAATCCATCTCTTTCAAGATTTGATATTCCCTGA-TG
98024 ACAGTGG
128 ACAGTGG
* * * ** * * * *
98031 AATAAGTCTACCTCGATTCAATATTCATTGAGTGATAGTGGAAAGGATCAACCTCCCC-AGATAT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * * ***
98095 GATATTCCCTCCAGAAGAAGCGAAATAAATCTCGATC-C-TTAAAGATTTGATATTTATTGAGTG
66 GATATTCCCTCCAGAAGAAGCAAAACAAATC-C-ATCTCTTTCAAGATTTGATATTCCCTGA-TG
*
98158 ACAGTAG
128 ACAGTGG
* * * * * * * *
98165 AGCAAGTTTGCCTCGATTCAATC-TCCCGTGAGTGACAGTGTAATGAATCCACATCCTC-AGATA
1 AACAAGTCTGCCTCGATTCAATCTTCCC-TGAGTGACAGTGGAATGGATCAACGTCCCCAAGATC
* * * *
98228 TGATATTACCTCTAGAAGAAGCAGAACAAATCCATCTCTTTCAAGATTTGATATTCCCTGCGTGA
65 TGATATTCCCTCCAGAAGAAGCAAAACAAATCCATCTCTTTCAAGATTTGATATTCCCTG-ATGA
* *
98293 TAGTGT
129 CAGTGG
* * *
98299 AACAAGTCTTCCTCGATTCAATCTTCCCTAAGTGACAATGGAAAT-GATCAACGTCCCC-AGATC
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGG-AATGGATCAACGTCCCCAAGATC
* * * *
98362 TGATATTCCCTCCAGAAGAAACAGAAA-AGATCCATCTCTTTCAAGATTTGATA-TCCTTAAGTG
65 TGATATTCCCTCCAGAAGAAGCA-AAACAAATCCATCTCTTTCAAGATTTGATATTCCCTGA-TG
*
98425 ACAATGG
128 ACAGTGG
* * * * * *
98432 AACAAGTCAGCCTCGATTTAATCTTCCTTGAGTCACAGTGGAATAGATCAACGTCCCC-AGATAT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * * *
98496 GATATTCCCTCCAGAAGAAACGAAACAAATCTC-TCCCTTTCAAGATTTAATATTCCCTGAGTGA
66 GATATTCCCTCCAGAAGAAGCAAAACAAATC-CATCTCTTTCAAGATTTGATATTCCCTGA-TGA
* **
98560 GAGTAT
129 CAGTGG
* * ** * * * ** *
98566 AATAAGTCTGCCTCGATTCAATCATCATTGGGTGACAGTGAAAGGGATCAATATCACC-AGATCT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * ** * * * *
98630 AATATTCCATCCAGAAGAAGCGGAACAGATCCCTCTCTTTGAAGATTTGATATTCCCTGAGTGAT
66 GATATTCCCTCCAGAAGAAGCAAAACAAATCCATCTCTTTCAAGATTTGATATTCCCTGA-TGAC
*
98695 AGTGA
130 AGTGG
* * * *
98700 AACAAGTCTGACTCGATTCAATCTTCCTTGAGTGACAGTGGAATAGATCAAC-TCCCC-AGATAT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * * * *
98763 GATATTCCCT-GAG-TG-A-CAATGGAACAAATCCCTCACTTTCAAGATTTGATATTCCATGAGT
66 GATATTCCCTCCAGAAGAAGCAA---AACAAATCCATCTCTTTCAAGATTTGATATTCCCTGA-T
* *
98824 GAGAGTGT
127 GACAGTGG
* * * *
98832 AACAAGTCTGCCTCGATTCAATCTTCCCTAACTGACAGTGGAATGTATCAACATCCCC-AGATCT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * * ** * *
98896 GATATT-CCTCCTGAAGAAGCAGAACAAATCCCTCTCTTTGTAGATTTGGTATTCCCTGCATGAA
66 GATATTCCCTCCAGAAGAAGCAAAACAAATCCATCTCTTTCAAGATTTGATATTCCCTG-ATGAC
98960 AGTGG
130 AGTGG
* * * *
98965 AACAAGTCTGCCTCGATTCAATCTTCCATGAGTAACAGTGGAATGGATCAAC-TCCCCCAGATTT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * * * *
99029 GATATTCCCTCCAAAAGAAGCAAAACAAATCCCTATATTTCAAGATTTGATATTCACTGAGTGAT
66 GATATTCCCTCCAGAAGAAGCAAAACAAATCCATCTCTTTCAAGATTTGATATTCCCTGA-TGA-
99094 CA-TGG
129 CAGTGG
* * ** * * * ** *
99099 AACAAGTATACCTTTATTCAATCTTCCCTGGGTGACAGTGGAATGGATCAACATCCTC-ATTTAT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * *
99163 GATATTCCCTCCAGAAAAAGCAGAACATAT-CATCTCTTTCAAGATTTGATATTCCCTGAGTGAC
66 GATATTCCCTCCAGAAGAAGCAAAACAAATCCATCTCTTTCAAGATTTGATATTCCCTGA-TGAC
99227 AGTGG
130 AGTGG
* * * * * *
99232 AACAAGTCTACCTTGATTCAATCTTCCCTGTGTGGCAGTGGAATGGATCAACGTCCCC-ATATAT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * **** * *
99296 GATATTCCCTCCAAAAAAAATTGAACATAT-CATCTCTTTCAAGATTTGATATTCCTTGAGTGAC
66 GATATTCCCTCCAGAAGAAGCAAAACAAATCCATCTCTTTCAAGATTTGATATTCCCTGA-TGAC
99360 AGTGG
130 AGTGG
* * * ** * * * *
99365 AAAAAGTATGTCTTTATTCAATCTTCCCTGATTGACAGTGGAATTGATCAACATCCCC-AGATAT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* ** *
99429 GATATTCCCTTTC-GAAGAAGCGGAACAAAT-CACTCTCTTTCAATATTTGATATTCCCTGAGTG
66 GATATTCCC-TCCAGAAGAAGCAAAACAAATCCA-TCTCTTTCAAGATTTGATATTCCCTGA-TG
99492 ACAGTGG
128 ACAGTGG
* * * * *
99499 AACAAGTCTACCTAGATTCAATCTTCCCTGAGTGACAGTGAAATGGATCGACGTCCCCAA-AACT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * * * ** * * *
99563 AATATTCCCTCTATATA-ATGCGGAACATAT-CACTATCTTTCAAGATTTGATATTTCCTGAGTG
66 GATATTCCCTCCAGA-AGAAGCAAAACAAATCCA-TCTCTTTCAAGATTTGATATTCCCTGA-TG
*
99626 ATAGTGG
128 ACAGTGG
* * * * * *
99633 AACAAGTCTTCCTTGATTTAATCTTCCCTGAGTGACAGTGGAATGTATCAAC-TCCCCCAGATAT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
* * * * * * *
99697 GATTTTCCCT-CAGGAAGAAGCATACCATATCCCTCTCCTTCAAGATTTGATATTCCCTGAGTAA
66 GATATTCCCTCCA-GAAGAAGCAAAACAAATCCATCTCTTTCAAGATTTGATATTCCCTGA-TGA
99761 CAGTGG
129 CAGTGG
* * * * *
99767 AACAAGTCTACCTCGATTCAATCTTCTCTGAGTGAAAGTGGAATAGATCAAAC-T-CCCTAGATC
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATC-AACGTCCCCAAGATC
* * ***
99830 AGATATTCCCTTCAGAAGAAGTGGAACAAAT-C-TCCATCTTTCAAGATTTGATATTCCCTGAAT
65 TGATATTCCCTCCAGAAGAAGCAAAACAAATCCAT-C-TCTTTCAAGATTTGATATTCCCTG-AT
*
99893 GATAGTGG
127 GACAGTGG
* * *
99901 AACAAGTCTACCTCGATTCAATCTTCCTTGAGTGACAGAGGAAT
1 AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAAT
99945 TAATCAACAA
Statistics
Matches: 2226, Mismatches: 404, Indels: 156
0.80 0.15 0.06
Matches are distributed among these distances:
122 1 0.00
123 96 0.04
124 1 0.00
129 2 0.00
130 1 0.00
131 2 0.00
132 123 0.06
133 492 0.22
134 1343 0.60
135 144 0.06
136 20 0.01
137 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (134 bp):
AACAAGTCTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACGTCCCCAAGATCT
GATATTCCCTCCAGAAGAAGCAAAACAAATCCATCTCTTTCAAGATTTGATATTCCCTGATGACA
GTGG
Found at i:99970 original size:268 final size:267
Alignment explanation
Indices: 97117--99967 Score: 2744
Period size: 268 Copynumber: 10.7 Consensus size: 267
97107 AGTATGGCTT
* * * *
97117 GATTCAATCTTCCCTAAGTGACAGTTGAATGGATCAACTCCCCCAGATCTTATATTCCCTCCAGA
1 GATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACT-CCCCAGATATGATATTCCCTCCAGA
** * * * *
97182 AGAAGCAAAACAAAATC-CTC-TTTTTCAAGATTTTATATTCCCTGTA-AGACAATGGAACAAGT
65 AGAAGCGGAAC-AAATCTC-CATCTTTCAAGATTTGATATTCCCTG-AGTGACAGTGGAACAAGT
* *
97244 CTGCCTCGATTCAATCTTCCCTAAGTGACAGTGGAATGGATCAAC-TCCCCA-ATATCTGAGATT
127 CTGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCAGATA--TGATATT
* * * * * *
97307 CCCTCCATAAGAAGCAAAATAGATCCATCTCTTTCAAGATTTGATATTCCCT-AGGTGACAATGG
190 CCCTCCAGAAGAAGCAGAACAAATCCCTCTCTTTCAAGATTTGATATTCCCTGA-GTGACAGTGG
*
97371 AATAAGTCTACCTC
254 AACAAGTCTACCTC
* * * * * *
97385 GATTCAATCTTCCCCTGAGTGACAATGAAATGGATCCACGTCTCCAGATCTGATATTCCCTCCAA
1 GATTCAATCTT-CCCTGAGTGACAGTGGAATGGATCAAC-TCCCCAGATATGATATTCCCTCCAG
**** * *
97450 AAGAAGCGGAGTTGA--TCCATCTCTTTCAAGATTTGATATTCCCTAAGTGACAGTGGAACAAAT
64 AAGAAGCGGAACAAATCTCCA--TCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACAAGT
* * * *
97513 CTGCC-CTAATTCAATATTCCCTGAGTGATAGTGGAATGGATCCACATCCCC-----------TC
127 CTGCCTC-GATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCAGATATGATATTC
* ** * * * *
97566 CCTTCAGAAGAAATAGAACAAATCCCCCTCTTTCAAGATTTGATATTCTCTGTGTGATAGTGGAA
191 CCTCCAGAAGAAGCAGAACAAATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAA
*
97631 CAAGTCTATCTC
256 CAAGTCTACCTC
* * * *
97643 GATTCAATATTCCCTGAGTGATAGTTGAATGGATCAACTCCCCCAGATATGATATTCCCTCCAAA
1 GATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACT-CCCCAGATATGATATTCCCTCCAGA
** * *
97708 AGAAATGGAACATATATCT-C-TCTTTCAAGATTTGATATTCCCTGAGTAACAGTGGAACATGTC
65 AGAAGCGGAACA-A-ATCTCCATCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACAAGTC
* * * * *
97771 TGCCTCGATTCAATCTTTCTTGAGTGACAGTGGAATGGATCAACGTCCCTAGATCTGATATTCCC
128 TGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCAGATATGATATTCCC
* * * * *
97836 TCTAGAAGAAG-AGAAACATATCCCTCTCTTTCAAGATTTGATATTCCCTTAGTGATAGTGGAAT
193 TCCAGAAGAAGCAG-AACAAATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAAC
**
97900 AAGTCTGGCTC
257 AAGTCTACCTC
* * * * * * *
97911 GATTTAATCTTTCCTAAGTGAAAGTGGAATAGATCAACTCCCAAAGATATGATATTCCCTCTAGA
1 GATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACTCCC-CAGATATGATATTCCCTCCAGA
** * * * *
97976 AGAAATGGAACATATATCT-C-TCTTTCAATATTTGATATTCCCTTAGTAACAGTGGAATAAGTC
65 AGAAGCGGAACA-A-ATCTCCATCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACAAGTC
* * ** * * *
98039 TACCTCGATTCAATATTCATTGAGTGATAGTGGAAAGGATCAACCTCCCCAGATATGATATTCCC
128 TGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCAGATATGATATTCCC
* * ** * * *** * *
98104 TCCAGAAGAAGC-GAAATAAATCTCGATCCTTAAAGATTTGATATTTATTGAGTGACAGTAGAGC
193 TCCAGAAGAAGCAG-AACAAATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAAC
* *
98168 AAGTTTGCCTC
257 AAGTCTACCTC
* * * * * *
98179 GATTCAATC-TCCCGTGAGTGACAGTGTAATGAATCCACATCCTCAGATATGATATTACCTCTAG
1 GATTCAATCTTCCC-TGAGTGACAGTGGAATGGATCAAC-TCCCCAGATATGATATTCCCTCCAG
* * * *
98243 AAGAAGCAGAACAAA--TCCATCTCTTTCAAGATTTGATATTCCCTGCGTGATAGTGTAACAAGT
64 AAGAAGCGGAACAAATCTCCA--TCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACAAGT
* * * * *
98306 CTTCCTCGATTCAATCTTCCCTAAGTGACAATGGAAAT-GATCAACGTCCCCAGATCTGATATTC
127 CTGCCTCGATTCAATCTTCCCTGAGTGACAGTGG-AATGGATCAACATCCCCAGATATGATATTC
* * * * *
98370 CCTCCAGAAGAAACAGAA-AAGATCCATCTCTTTCAAGATTTGATA-TCCTTAAGTGACAATGGA
191 CCTCCAGAAGAAGCAGAACAA-ATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGA
98433 ACAAGTC-AGCCTC
255 ACAAGTCTA-CCTC
* * * *
98446 GATTTAATCTTCCTTGAGTCACAGTGGAATAGATCAACGTCCCCAGATATGATATTCCCTCCAGA
1 GATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAAC-TCCCCAGATATGATATTCCCTCCAGA
* * * * * ** *
98511 AGAAACGAAACAAATCTCTC-CCTTTCAAGATTTAATATTCCCTGAGTGAGAGTATAATAAGTCT
65 AGAAGCGGAACAAATCTC-CATCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACAAGTCT
* ** * * * * * * * *
98575 GCCTCGATTCAATCATCATTGGGTGACAGTGAAAGGGATCAATATCACCAGATCTAATATTCCAT
129 GCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCAGATATGATATTCCCT
* * * * *
98640 CCAGAAGAAGCGGAACAGATCCCTCTCTTTGAAGATTTGATATTCCCTGAGTGATAGTGAAACAA
194 CCAGAAGAAGCAGAACAAATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACAA
98705 GTCTGA-CTC
259 GTCT-ACCTC
* * * *
98714 GATTCAATCTTCCTTGAGTGACAGTGGAATAGATCAACTCCCCAGATATGATATTCCCT-GAG-T
1 GATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACTCCCCAGATATGATATTCCCTCCAGAA
** * * * *
98777 GACAATGGAACAAATCCCTCA-CTTTCAAGATTTGATATTCCATGAGTGAGAGTGTAACAAGTCT
66 GA-AGCGGAACAAATCTC-CATCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACAAGTCT
* * * *
98841 GCCTCGATTCAATCTTCCCTAACTGACAGTGGAATGTATCAACATCCCCAGATCTGATATT-CCT
129 GCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCAGATATGATATTCCCT
* ** * *
98905 CCTGAAGAAGCAGAACAAATCCCTCTCTTTGTAGATTTGGTATTCCCTGCA-TGAAAGTGGAACA
194 CCAGAAGAAGCAGAACAAATCCCTCTCTTTCAAGATTTGATATTCCCTG-AGTGACAGTGGAACA
*
98969 AGTCTGCCTC
258 AGTCTACCTC
* * * *
98979 GATTCAATCTTCCATGAGTAACAGTGGAATGGATCAACTCCCCCAGATTTGATATTCCCTCCAAA
1 GATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACT-CCCCAGATATGATATTCCCTCCAGA
** * * *
99044 AGAAGCAAAACAAATC-CCTATATTTCAAGATTTGATATTCACTGAGTGATCA-TGGAACAAGTA
65 AGAAGCGGAACAAATCTCC-ATCTTTCAAGATTTGATATTCCCTGAGTGA-CAGTGGAACAAGTC
* ** * * **
99107 TACCTTTATTCAATCTTCCCTGGGTGACAGTGGAATGGATCAACATCCTCATTTATGATATTCCC
128 TGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCAGATATGATATTCCC
* * *
99172 TCCAGAAAAAGCAGAACATAT-CATCTCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACA
193 TCCAGAAGAAGCAGAACAAATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACA
*
99236 AGTCTACCTT
258 AGTCTACCTC
* * * *
99246 GATTCAATCTTCCCTGTGTGGCAGTGGAATGGATCAACGTCCCCATATATGATATTCCCTCCAAA
1 GATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAAC-TCCCCAGATATGATATTCCCTCCAGA
* *** * * * *
99311 AAAAATTGAACATATCAT-C-TCTTTCAAGATTTGATATTCCTTGAGTGACAGTGGAAAAAGTAT
65 AGAAGCGGAACAAATC-TCCATCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACAAGTCT
* ** * *
99374 GTCTTTATTCAATCTTCCCTGATTGACAGTGGAATTGATCAACATCCCCAGATATGATATTCCCT
129 GCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCAGATATGATATTCCC-
* * * *
99439 TTC-GAAGAAGCGGAACAAATCACTCTCTTTCAATATTTGATATTCCCTGAGTGACAGTGGAACA
193 TCCAGAAGAAGCAGAACAAATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACA
*
99503 AGTCTACCTA
258 AGTCTACCTC
* * * * * *
99513 GATTCAATCTTCCCTGAGTGACAGTGAAATGGATCGACGTCCCCA-AAACTAATATTCCCTCTAT
1 GATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAAC-TCCCCAGATA-TGATATTCCCTCCAG
* * * * * *
99577 ATA-ATGCGGAACATATCACTATCTTTCAAGATTTGATATTTCCTGAGTGATAGTGGAACAAGTC
64 A-AGAAGCGGAACAAATCTCCATCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACAAGTC
* * * * *
99641 TTCCTTGATTTAATCTTCCCTGAGTGACAGTGGAATGTATCAAC-TCCCCCAGATATGATTTTCC
128 TGCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACAT-CCCCAGATATGATATTCC
* * * * *
99705 CT-CAGGAAGAAGCATACCATATCCCTCTCCTTCAAGATTTGATATTCCCTGAGTAACAGTGGAA
192 CTCCA-GAAGAAGCAGAACAAATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAA
99769 CAAGTCTACCTC
256 CAAGTCTACCTC
* * * * *
99781 GATTCAATCTTCTCTGAGTGAAAGTGGAATAGATCAAACTCCCTAGATCA-GATATTCCCTTCAG
1 GATTCAATCTTCCCTGAGTGACAGTGGAATGGATC-AACTCCCCAGAT-ATGATATTCCCTCCAG
* * *
99845 AAGAAGTGGAACAAATCTCCATCTTTCAAGATTTGATATTCCCTGAATGATAGTGGAACAAGTCT
64 AAGAAGCGGAACAAATCTCCATCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACAAGTCT
* * * ** * *
99910 ACCTCGATTCAATCTTCCTTGAGTGACAGAGGAATTAATCAACAACCCCAAATATGAT
129 GCCTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCAGATATGAT
99968 TTTTCCTAAA
Statistics
Matches: 2131, Mismatches: 373, Indels: 158
0.80 0.14 0.06
Matches are distributed among these distances:
256 1 0.00
257 131 0.06
258 74 0.03
259 1 0.00
260 1 0.00
261 1 0.00
264 1 0.00
265 107 0.05
266 241 0.11
267 561 0.26
268 869 0.41
269 134 0.06
270 9 0.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (267 bp):
GATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACTCCCCAGATATGATATTCCCTCCAGAA
GAAGCGGAACAAATCTCCATCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACAAGTCTGC
CTCGATTCAATCTTCCCTGAGTGACAGTGGAATGGATCAACATCCCCAGATATGATATTCCCTCC
AGAAGAAGCAGAACAAATCCCTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGTGGAACAAGT
CTACCTC
Found at i:102220 original size:39 final size:39
Alignment explanation
Indices: 102166--102315 Score: 137
Period size: 39 Copynumber: 3.8 Consensus size: 39
102156 CCTTCCATAG
* *
102166 GCTCCTCGGCTTTGTGTTGAGGGTAAGTCCTTAGTGCAT
1 GCTCCTCTGCTTTGTGTTGAGGGTAAGTCCTTACTGCAT
* * * * *
102205 GCTCCTCTGCTTTGTGTTCAGGGTAAGTCTTTATTGTAG
1 GCTCCTCTGCTTTGTGTTGAGGGTAAGTCCTTACTGCAT
* * *
102244 GCTCCTCTGCTTTGTGCAT-AGGATAAGAT-ATTACTGCAT
1 GCTCCTCTGCTTTGTG-TTGAGGGTAAG-TCCTTACTGCAT
*
102283 GCACCTCTGC-TT-TGTTGACAGGGTAAGTCCTTA
1 GCTCCTCTGCTTTGTGTTG--AGGGTAAGTCCTTA
102316 TTGGGTGTAT
Statistics
Matches: 89, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
36 1 0.01
37 2 0.02
38 3 0.03
39 81 0.91
40 2 0.02
ACGTcount: A:0.17, C:0.21, G:0.25, T:0.37
Consensus pattern (39 bp):
GCTCCTCTGCTTTGTGTTGAGGGTAAGTCCTTACTGCAT
Found at i:104520 original size:39 final size:39
Alignment explanation
Indices: 104463--104617 Score: 211
Period size: 39 Copynumber: 4.0 Consensus size: 39
104453 CCTGTACACC
* *
104463 CAATAAGAACTTACCCTGTGCACAAAGCAGAGGAGCCTG
1 CAATAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTG
* * *
104502 CAATAAGGTCTTATCCTGTGCACAAAGCAGAGGAGCCTG
1 CAATAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTG
* * *
104541 CAGTAAGGACTTACCCTGAGCACAAAGCAGATGAGCCTA
1 CAATAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTG
* * *
104580 CAGTAAGGACTTACCCTAAGCACAAAGCCGAGGAGCCT
1 CAATAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCT
104618 ACGAAAAGCA
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 104 1.00
ACGTcount: A:0.34, C:0.26, G:0.24, T:0.16
Consensus pattern (39 bp):
CAATAAGGACTTACCCTGAGCACAAAGCAGAGGAGCCTG
Found at i:110100 original size:51 final size:51
Alignment explanation
Indices: 110040--110142 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
110030 TAAAATGATA
110040 AAGTAATTAATATAAATGCTTCAGGTACATCAACATCAGTCATGTGTTCAT
1 AAGTAATTAATATAAATGCTTCAGGTACATCAACATCAGTCATGTGTTCAT
110091 AAGTAATTAATATAAATGCTTCAGGTACATCAACATCAGTCATGTGTTCAT
1 AAGTAATTAATATAAATGCTTCAGGTACATCAACATCAGTCATGTGTTCAT
110142 A
1 A
110143 GAGATCTTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.33
Consensus pattern (51 bp):
AAGTAATTAATATAAATGCTTCAGGTACATCAACATCAGTCATGTGTTCAT
Found at i:112331 original size:17 final size:18
Alignment explanation
Indices: 112309--112345 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
112299 ATTTTAAGTT
*
112309 ATTTTTTAAAAATA-AAA
1 ATTTTTAAAAAATATAAA
112326 ATTTTTAAAAAATATAAA
1 ATTTTTAAAAAATATAAA
112344 AT
1 AT
112346 GTGACATGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTTTTAAAAAATATAAA
Found at i:115226 original size:20 final size:20
Alignment explanation
Indices: 115201--115254 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
115191 GAAATATGAG
* *
115201 GTGTATCGATACATATAGGA
1 GTGTATCGGTACATACAGGA
115221 GTGTATCGGTACATACAGGA
1 GTGTATCGGTACATACAGGA
115241 GTGTATCGGTACAT
1 GTGTATCGGTACAT
115255 CCCTTTGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.30
Consensus pattern (20 bp):
GTGTATCGGTACATACAGGA
Found at i:123949 original size:20 final size:19
Alignment explanation
Indices: 123902--123949 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
123892 TCGAATATTT
*
123902 AATCGAATATATAATTTAAA
1 AATC-AATATAAAATTTAAA
*
123922 AATGAATATAAAATCTTAAA
1 AATCAATATAAAAT-TTAAA
*
123942 ATTCAATA
1 AATCAATA
123950 ATATTTTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.56, C:0.06, G:0.04, T:0.33
Consensus pattern (19 bp):
AATCAATATAAAATTTAAA
Done.