Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002805.1 Hibiscus syriacus cultivar Beakdansim tig00005774_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101547

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3213--3243
16
1.9
16
93
0
53
51
12
0
35
1.40
3427--3457
14
2.2
14
100
0
62
51
6
12
29
1.65
4165--4205
20
2.0
20
86
9
57
31
24
2
41
1.68
16878--16924
20
2.4
19
85
3
58
29
19
25
25
1.98
21237--21279
21
2.0
23
86
9
63
69
0
20
9
1.15
21250--21334
27
3.2
26
76
12
75
67
1
17
14
1.30
29479--29545
29
2.3
29
92
0
107
25
4
5
64
1.36
29479--29554
29
2.6
29
87
4
91
25
3
6
64
1.35
29826--29867
21
2.0
21
90
9
68
19
19
0
61
1.34
37143--37183
17
2.4
17
100
0
82
17
36
9
36
1.82
38427--38500
20
3.7
20
88
0
112
27
17
20
35
1.95
47910--47963
20
2.7
20
82
0
63
27
20
24
27
1.99
47976--48026
20
2.5
20
87
3
66
39
19
13
27
1.90
49223--49298
20
3.8
20
91
0
116
30
18
25
26
1.98
49308--49358
20
2.5
20
87
3
66
39
19
13
27
1.90
53620--53671
25
2.1
25
88
0
77
53
1
7
36
1.41
54577--54687
51
2.2
51
83
3
134
19
30
33
16
1.94
54886--54962
29
2.4
32
85
10
97
29
0
3
66
1.10
61438--61910
181
2.6
182
90
0
705
42
13
16
27
1.86
61831--61877
20
2.4
19
79
10
58
53
8
17
21
1.70
64097--64159
21
3.0
21
92
0
99
41
11
30
17
1.84
64193--64258
33
2.0
33
90
0
105
28
0
48
22
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66041--66089
19
2.6
19
90
0
80
32
4
8
55
1.48
66323--67082
200
3.8
200
94
1
1305
35
15
18
30
1.92
66323--67082
396
1.9
399
93
1
1303
35
15
18
30
1.92
68521--68584
6
10.7
6
86
0
65
39
6
32
21
1.79
68538--68585
3
16.0
3
82
0
60
37
4
33
25
1.75
68521--68584
12
5.3
12
90
0
83
39
6
32
21
1.79
69027--69614
182
3.2
183
92
2
959
36
14
15
34
1.88
69488--69734
120
2.1
120
94
0
431
32
13
15
38
1.87
73039--73288
87
2.9
87
95
0
455
33
14
9
42
1.78
73123--73167
23
2.0
23
90
0
72
37
13
8
40
1.76
73210--73254
23
2.0
23
86
0
63
37
15
8
37
1.79
75365--75401
2
18.0
2
94
5
65
48
0
2
48
1.15
76929--76960
15
2.0
17
88
11
50
34
3
6
56
1.40
77998--78063
22
3.0
22
80
8
55
43
4
4
46
1.44
83516--83616
42
2.4
42
96
1
186
36
15
22
24
1.94
83600--83721
64
1.9
64
91
3
201
36
20
18
24
1.95
83606--83761
64
2.4
63
84
6
181
34
21
19
23
1.96
86947--86994
21
2.3
21
96
0
87
41
12
18
27
1.86
91588--91635
21
2.3
21
96
0
87
41
12
18
27
1.86
94073--94100
14
2.0
14
100
0
56
14
14
14
57
1.66
94359--94427
23
3.0
22
83
8
84
13
10
15
60
1.58
94491--94521
16
1.9
16
93
0
53
12
12
16
58
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94640--94683
2
22.0
2
100
0
88
50
0
0
50
1.00

Tables:   1

The End!