genome.fa.s2807.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002807.1 Hibiscus syriacus cultivar Beakdansim tig00005776_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70402

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667--703	10	3.7	10	92	7	58	40	18	0	40	1.51
10275--10442	85	2.0	85	98	0	327	28	16	25	29	1.97
11767--11968	114	1.8	110	84	4	278	38	22	14	24	1.91
11767--11971	55	3.7	55	89	2	275	39	22	14	23	1.91
11939--12406	120	3.9	119	85	3	639	33	26	16	23	1.95
11938--12406	244	1.9	244	90	0	740	33	26	15	23	1.95
14738--14825	36	2.4	36	88	0	122	50	6	12	30	1.66
14855--15027	78	2.2	78	82	4	197	38	14	17	29	1.90
16115--16256	48	2.9	47	81	6	158	25	28	8	38	1.85
25371--25423	20	2.7	20	100	0	106	15	45	24	15	1.84
29592--29653	20	3.0	20	81	9	61	25	32	25	16	1.96
39280--39323	21	2.1	21	83	8	54	70	4	2	22	1.17
40642--40668	14	1.9	14	100	0	54	51	11	7	29	1.64
50281--50309	14	2.0	15	93	6	51	62	27	0	10	1.28
51700--51839	42	3.4	40	76	15	151	36	20	20	22	1.95
51689--51879	82	2.3	82	85	7	269	35	19	18	26	1.95
51700--51879	42	4.3	40	74	16	145	36	20	19	24	1.95
51870--52024	41	3.8	41	86	3	197	34	13	18	33	1.90
51847--52026	41	4.4	40	81	6	130	33	13	17	35	1.89
51847--52041	82	2.4	83	79	5	207	34	14	17	33	1.90
53274--53371	43	2.3	43	81	10	112	27	17	22	32	1.96
53655--53775	41	3.0	41	75	9	129	32	14	19	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53632--53821	82	2.3	82	81	3	204	32	14	18	34	1.91
61897--62001	21	5.0	21	82	2	95	40	20	36	1	1.64
61933--62014	42	2.0	42	80	9	96	42	19	34	3	1.69
62418--62582	85	1.9	85	83	2	215	35	26	17	20	1.95
62418--62582	43	3.9	43	79	4	172	35	26	17	20	1.95
62459--62788	43	7.7	43	81	7	289	34	24	15	25	1.95
62459--62788	130	2.6	129	80	3	344	34	24	15	25	1.95
62543--62813	87	3.1	85	81	5	312	33	23	14	28	1.94
68428--68461	10	3.3	10	84	8	50	11	0	2	85	0.71
68758--68790	17	1.9	17	100	0	66	12	9	42	36	1.74
70262--70312	25	2.0	25	100	0	102	49	11	11	27	1.74

Tables:   1

The End!