Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002808.1 Hibiscus syriacus cultivar Beakdansim tig00005777_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71621

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9868--9949
32
2.5
33
86
7
114
29
17
10
42
1.83
9873--9961
32
2.8
32
79
6
101
32
16
11
39
1.84
14068--14117
20
2.6
19
74
22
50
52
0
0
48
1.00
14783--14892
53
2.1
51
80
11
118
37
5
2
54
1.38
15174--15230
24
2.4
24
90
0
96
35
10
22
31
1.88
15370--15417
17
3.1
17
71
22
59
54
4
12
29
1.56
15357--15417
30
2.1
29
96
3
113
57
3
9
29
1.47
18403--18509
39
2.7
39
92
0
178
23
14
29
31
1.95
21690--21735
24
1.9
24
81
0
56
10
39
6
43
1.66
23048--23129
35
2.3
35
85
0
110
30
23
9
36
1.87
24675--24731
3
19.0
3
75
13
55
5
31
1
61
1.28
25023--25052
3
10.0
3
92
0
51
63
0
3
33
1.11
26161--26205
18
2.5
19
85
10
67
17
4
2
75
1.07
31867--31919
3
17.7
3
96
0
97
33
1
0
64
1.05
32376--32433
30
2.0
30
87
12
86
65
8
18
6
1.43
32412--32451
20
2.0
20
90
5
62
72
7
20
0
1.08
32733--32757
11
2.3
11
100
0
50
28
20
44
8
1.79
33303--33336
18
1.9
18
94
5
61
14
2
5
76
1.09
33370--33410
20
2.0
21
85
4
57
41
2
2
53
1.27
34104--34154
18
2.9
17
72
18
50
25
0
1
72
0.95
34145--34181
15
2.7
15
88
12
53
24
5
8
62
1.44
37478--37509
15
2.2
15
94
5
57
46
6
3
43
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45912--46558
246
2.6
246
96
1
1197
27
14
21
36
1.92
45912--46590
330
2.0
332
95
2
1222
27
14
21
36
1.92
45912--46590
84
8.2
84
95
2
1214
27
14
21
36
1.92
47299--48078
113
6.9
113
94
1
1350
37
12
19
30
1.89
48392--48463
3
23.7
3
91
2
117
36
1
0
62
1.04
48908--48964
30
2.0
30
86
13
84
64
8
19
7
1.44
48944--48982
19
2.0
19
90
5
60
71
7
20
0
1.10
49892--49932
20
2.0
21
85
4
57
41
2
2
53
1.27
53667--53720
24
2.2
24
90
0
81
16
11
14
57
1.65
54658--54695
13
2.9
13
77
14
51
18
5
5
71
1.25
54659--54692
17
2.0
17
88
0
50
20
2
2
73
1.09
56421--56449
5
5.8
5
100
0
58
58
0
41
0
0.98
59063--59128
33
2.0
33
96
0
123
16
21
24
37
1.93
63848--63890
21
2.0
21
82
8
52
48
9
13
27
1.73
64000--64026
12
2.2
12
100
0
54
7
18
14
59
1.58
65599--65633
18
1.9
18
100
0
70
45
0
2
51
1.16
70993--71050
30
1.9
30
82
0
71
29
18
8
43
1.80
71001--71103
31
3.5
28
73
15
82
29
18
7
44
1.77

Tables:   1

The End!