genome.fa.s2809.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002809.1 Hibiscus syriacus cultivar Beakdansim tig00005778_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98300

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2946--3009	5	11.8	5	78	21	51	81	1	17	0	0.77
2942--3004	7	9.7	7	76	13	64	80	1	17	0	0.78
2944--3009	12	5.3	12	80	20	82	81	1	16	0	0.76
5564--5902	31	11.4	30	75	16	232	14	7	1	76	1.07
5575--5904	60	5.6	57	74	15	257	14	7	1	76	1.05
5545--5903	5	72.0	5	68	18	107	15	7	1	75	1.08
5610--5904	9	30.4	9	68	18	123	14	7	1	76	1.04
5574--5922	52	6.9	50	71	19	228	15	7	1	75	1.07
5545--5922	122	3.0	123	77	15	325	15	7	1	75	1.08
5635--5875	28	9.1	26	75	15	140	14	7	0	77	1.03
5666--5884	26	8.5	27	75	15	123	15	6	0	76	1.04
5662--5884	25	8.7	26	75	14	126	15	6	0	77	1.03
5552--5856	27	10.9	28	68	21	65	14	7	1	76	1.07
7548--7593	12	3.6	12	81	16	56	45	17	19	17	1.85
7554--7594	12	3.1	13	80	19	57	46	14	17	21	1.84
9922--10020	33	3.0	33	94	1	164	35	7	12	45	1.69
10006--10060	13	4.2	13	75	13	58	34	3	12	49	1.59
10256--10312	21	2.7	21	91	0	96	19	26	26	28	1.99
10479--10534	15	3.6	15	76	9	58	33	12	10	42	1.77
10498--10531	18	1.9	18	94	5	61	38	11	11	38	1.79
10625--10656	16	2.0	17	88	11	50	43	21	21	12	1.86
11220--11285	27	2.5	26	78	14	73	43	4	0	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11235--11285	24	2.1	24	82	13	61	43	3	0	52	1.19
11196--11298	27	3.9	27	67	15	70	41	3	0	54	1.19
16501--16548	24	2.0	24	100	0	96	29	12	41	16	1.85
16507--16558	24	2.2	24	85	0	68	28	11	48	11	1.74
25515--25545	16	2.0	16	93	6	55	70	6	22	0	1.09
26483--26541	27	2.2	27	96	0	109	28	23	11	35	1.91
28556--28600	20	2.2	20	84	7	56	26	15	17	40	1.90
35479--35535	22	2.5	22	82	2	69	15	3	5	75	1.12
35868--35935	32	2.1	32	91	0	109	32	10	22	35	1.88
36627--36656	14	2.2	14	94	5	53	40	13	20	26	1.89
36944--36972	2	14.5	2	100	0	58	51	0	0	48	1.00
41811--41890	29	2.8	29	98	0	151	20	33	30	16	1.94
42500--42543	21	2.1	21	91	0	70	29	0	15	54	1.42
42520--42582	28	2.2	30	91	5	103	31	0	11	57	1.34
43384--43442	26	2.3	25	75	18	66	47	8	3	40	1.51
46295--46327	8	4.2	8	84	7	50	36	0	12	51	1.39
46329--46686	26	14.4	25	76	14	266	43	1	9	45	1.47
46272--46678	123	3.3	124	93	3	671	43	1	9	45	1.47
46638--46686	13	3.8	13	97	0	89	44	0	6	48	1.27
46784--46816	17	1.9	17	93	0	57	36	6	12	45	1.66
47721--47768	23	2.1	23	84	0	60	60	2	2	35	1.20
48963--48994	15	2.2	14	94	5	55	53	6	0	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48969--49015	16	3.0	16	84	9	53	59	10	0	29	1.31
49175--49307	45	3.0	44	80	14	134	47	12	0	40	1.41
49197--49335	41	3.3	40	74	14	102	47	11	0	40	1.45
49462--49527	4	16.5	4	75	9	55	1	34	0	63	1.04
49470--49528	21	2.9	21	94	2	102	1	35	0	62	1.05
49531--49576	23	2.0	23	100	0	92	8	39	4	47	1.54
49702--49775	37	2.0	37	97	2	141	24	13	45	16	1.83
49826--49963	29	4.8	29	96	1	242	22	31	31	14	1.94
49977--50169	61	3.1	61	90	4	298	10	33	22	33	1.89
50024--50232	93	2.3	92	93	3	357	11	34	21	33	1.88
50246--50280	13	2.8	13	95	4	63	14	37	17	31	1.89
50638--50760	61	2.0	61	84	7	162	39	8	12	39	1.74
50624--50761	61	2.3	58	78	11	154	39	8	10	40	1.71
52086--52121	2	18.0	2	100	0	72	50	0	0	50	1.00
52317--52373	29	2.0	29	82	6	71	26	28	10	35	1.89
56443--56500	29	2.0	30	86	3	82	13	41	18	25	1.88
56567--56599	14	2.2	15	89	10	50	12	0	30	57	1.35
56567--56593	14	1.9	14	100	0	54	14	0	29	55	1.40
56791--56831	20	2.2	20	86	8	59	36	2	9	51	1.48
56815--56881	32	2.1	32	83	5	82	23	1	17	56	1.49
56855--56947	22	4.4	22	91	5	147	18	4	22	54	1.60
57605--57650	24	1.9	24	86	8	67	19	32	15	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58005--58174	30	5.9	30	76	13	185	29	4	20	46	1.69
58021--58174	57	2.7	57	93	0	263	27	4	20	46	1.70
59493--59551	31	1.9	31	96	0	109	42	8	6	42	1.61
66889--67215	90	3.7	88	85	7	373	23	22	14	39	1.91
67015--67172	44	3.5	44	72	10	140	21	20	15	41	1.90
66999--67215	46	4.8	44	70	11	163	23	21	16	39	1.92
84887--85459	137	4.2	137	89	0	806	24	15	24	36	1.94
85404--85542	40	3.4	40	74	16	140	20	12	30	36	1.89
92099--92167	20	3.5	19	75	14	68	63	11	10	14	1.51
92263--92352	43	2.1	43	87	4	128	34	22	8	34	1.85
92810--92878	36	1.9	36	90	0	111	28	11	17	42	1.84
95719--95744	3	8.7	3	100	0	52	65	0	0	34	0.93
96345--96388	21	2.1	21	83	8	54	45	4	0	50	1.22

Tables:   1

The End!