genome.fa.s2810.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002810.1 Hibiscus syriacus cultivar Beakdansim tig00005779_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70972

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3773--3802	15	2.0	15	100	0	60	33	13	26	26	1.93
11354--11399	21	2.1	22	88	4	67	47	4	0	47	1.21
12257--12305	19	2.7	17	84	9	53	26	20	28	24	1.99
12806--12855	25	2.0	25	88	3	75	24	38	0	38	1.56
18582--19041	146	3.1	149	96	2	856	35	21	15	27	1.94
19495--19652	63	2.5	63	86	2	201	27	21	18	32	1.97
25745--25790	23	2.0	23	91	0	74	28	26	23	21	1.99
25768--26218	149	3.0	149	99	0	888	35	20	15	27	1.94
26674--26831	63	2.5	63	85	2	192	25	20	19	33	1.97
32475--32517	20	2.2	20	86	0	59	37	20	11	30	1.89
37409--37451	20	2.2	20	86	0	59	34	20	13	30	1.92
37593--37678	31	2.8	31	85	0	118	27	22	16	33	1.95
46499--46523	12	2.1	12	100	0	50	84	8	0	8	0.79
47240--47273	18	1.9	17	94	5	59	73	0	14	11	1.10
47319--47386	17	4.4	15	73	12	50	72	2	2	22	1.12
48477--48554	14	5.5	14	72	23	65	76	0	2	20	0.90
48486--48554	12	5.7	12	76	19	63	76	0	2	20	0.91
48486--48549	17	3.6	16	76	19	65	76	0	3	20	0.92
48536--48594	24	2.4	25	77	8	68	59	1	1	37	1.18
48546--48913	74	5.0	73	87	8	469	49	5	0	44	1.31
48548--48915	38	9.9	38	90	3	495	49	5	0	44	1.31
48900--48935	2	18.5	2	94	5	65	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48864--48973	58	1.9	57	90	1	175	46	0	1	50	1.18
48921--49192	38	7.4	37	82	8	297	43	5	6	44	1.52
49176--49205	2	15.5	2	93	6	53	50	0	0	50	1.00
53157--53196	21	1.9	21	90	10	64	52	0	10	37	1.35
56986--57044	21	2.9	20	82	5	82	28	33	23	13	1.93
59273--59322	21	2.4	21	100	0	100	32	0	44	24	1.54
61421--61451	15	2.1	15	100	0	62	19	38	22	19	1.93
61493--61534	8	4.8	9	77	16	52	76	0	2	21	0.90
61485--61534	17	2.9	16	83	16	64	74	0	2	24	0.93
61485--61535	18	2.9	17	86	13	68	74	0	1	23	0.92
61493--61535	13	3.2	14	87	6	63	76	0	2	20	0.89
61639--61691	20	2.5	22	87	9	74	41	9	5	43	1.61
61660--61822	37	4.4	37	82	8	188	42	11	3	43	1.55
61660--61805	76	1.9	76	87	5	215	41	10	3	43	1.56
61810--61852	22	2.0	22	86	9	61	39	13	6	39	1.72
63422--63547	24	5.3	25	79	12	99	42	19	11	27	1.85
63435--63550	48	2.4	47	85	5	153	40	19	12	27	1.87
67841--67915	7	10.6	7	76	13	64	76	1	2	20	0.99
67897--67952	21	2.5	24	74	14	64	58	1	1	37	1.19
67907--68007	34	2.9	36	94	4	172	51	4	0	42	1.30
68097--68306	20	10.6	19	76	11	131	35	24	15	24	1.94
68097--68295	40	5.0	41	79	9	155	35	24	15	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68177--68306	40	3.3	40	90	4	185	37	23	16	22	1.93
68177--68288	60	1.9	59	90	1	179	37	24	17	20	1.94
69184--69237	24	2.2	24	93	0	90	20	18	20	40	1.91
69662--69734	22	3.3	22	92	0	119	24	12	39	23	1.89
69854--69918	20	3.2	20	73	20	64	20	15	23	41	1.89
69903--70019	21	5.8	21	71	7	71	29	16	26	28	1.97
69963--70015	19	2.7	20	69	13	56	28	15	30	26	1.96
70098--70277	38	5.0	36	86	9	226	48	5	1	44	1.34
70098--70275	70	2.5	71	83	9	218	48	5	1	44	1.34
70262--70295	2	17.5	2	93	6	61	50	0	0	50	1.00
70192--70368	93	1.9	92	90	3	284	46	2	3	47	1.33
70225--70333	56	2.0	54	89	3	164	47	1	2	47	1.27
70279--70404	38	3.3	38	85	6	175	41	5	6	46	1.52
70156--70404	131	1.9	127	83	9	317	44	4	4	46	1.42

Tables:   1

The End!