genome.fa.s2811.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002811.1 Hibiscus syriacus cultivar Beakdansim tig00005782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102569

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932--1232	146	2.1	145	89	8	468	30	13	14	41	1.84
1505--1543	17	2.4	17	91	4	62	25	0	0	74	0.82
1744--1808	22	2.7	25	79	20	84	36	3	0	60	1.13
8976--9016	13	3.1	14	79	10	50	29	0	68	2	1.03
18582--18720	36	3.9	36	93	0	242	25	17	15	41	1.88
25976--26115	36	3.9	36	91	0	235	25	17	15	42	1.88
30863--30896	12	2.6	13	86	13	52	85	2	11	0	0.71
42833--42896	27	2.4	27	91	0	110	42	14	15	28	1.86
42948--42988	16	2.6	16	92	0	73	31	14	12	41	1.83
47062--47112	2	25.5	2	100	0	102	50	0	0	49	1.00
49543--49596	22	2.6	20	78	16	65	24	7	9	59	1.54
53757--53894	54	2.6	54	87	9	185	31	28	18	22	1.97
53896--54270	84	4.4	84	90	0	525	33	24	19	22	1.97
54235--54440	83	2.5	83	82	0	277	34	18	17	29	1.94
55784--55810	3	9.0	3	100	0	54	33	0	0	66	0.92
63237--63266	2	15.0	2	100	0	60	50	0	0	50	1.00
65900--65938	20	2.0	20	100	0	78	53	15	0	30	1.42
66355--66388	7	4.9	7	85	0	50	23	11	2	61	1.43
74515--74745	117	2.0	117	90	1	365	24	23	17	33	1.96
76879--76919	17	2.4	17	91	4	64	34	2	9	53	1.47
77003--77031	15	1.9	15	100	0	58	37	6	0	55	1.27
79052--79145	36	2.7	35	88	3	134	23	21	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83574--83625	22	2.4	22	93	0	86	30	21	13	34	1.92
83617--83666	22	2.3	22	86	6	66	38	22	20	20	1.94
84519--84552	2	17.0	2	100	0	68	50	0	0	50	1.00
95973--96241	68	4.0	68	81	6	325	29	10	11	48	1.72
97060--98385	215	6.3	216	90	5	2107	50	8	12	27	1.70
97060--98385	421	3.1	423	93	3	2240	50	8	12	27	1.70
98466--98573	2	54.5	2	70	15	73	49	1	4	44	1.34
98496--98571	29	2.6	29	89	2	107	48	1	3	46	1.29
98537--98593	20	2.8	20	84	7	62	47	7	3	42	1.47
98659--98719	23	2.7	23	79	16	74	54	1	6	37	1.37
98672--98721	13	3.8	13	77	17	59	54	2	6	38	1.37
98659--98723	20	3.0	20	76	20	76	55	1	6	36	1.34
98769--98824	28	2.0	27	89	3	85	42	5	5	46	1.49
98800--99012	18	11.3	20	68	24	101	41	7	6	44	1.60
98863--99100	18	12.9	18	65	22	70	41	8	6	43	1.60
98821--99077	55	4.6	55	74	17	226	41	7	7	43	1.60
98844--98974	42	3.2	42	80	12	173	41	7	6	44	1.60
98860--98982	38	3.1	39	78	13	151	41	8	5	44	1.58
98948--99016	33	2.2	32	86	5	95	44	10	4	40	1.58
98948--99026	33	2.5	32	82	8	90	44	8	5	41	1.57
98886--99104	88	2.4	90	84	8	266	42	8	5	43	1.59
99011--99058	24	2.1	22	84	7	60	39	4	8	47	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99033--99102	36	2.0	35	86	13	99	41	10	5	42	1.62
99186--99248	19	3.0	21	82	17	78	42	1	3	52	1.27
99193--99277	19	4.7	18	75	15	68	44	5	1	48	1.34
99320--99398	32	2.3	33	80	8	79	51	7	2	37	1.44
99383--99459	32	2.4	33	89	6	122	42	7	5	44	1.55
99349--99641	18	16.9	18	65	23	130	43	8	7	40	1.63
99383--99470	33	2.7	32	87	5	124	42	7	5	44	1.57
99516--99630	33	3.8	31	70	20	100	42	8	9	39	1.68
99417--99629	58	3.9	57	78	14	245	41	8	8	41	1.66
99413--99672	51	5.0	51	78	14	275	42	8	8	40	1.66
100074--100452	123	3.1	122	86	7	482	26	27	8	37	1.85
100521--100586	34	2.0	33	93	3	114	33	33	0	33	1.58
100584--100793	6	35.8	6	70	6	108	47	40	3	9	1.53
100697--100787	11	7.9	11	72	8	56	47	39	4	8	1.55
100584--100808	93	2.4	91	82	5	222	47	39	4	8	1.55
101029--101069	2	21.0	2	95	5	75	48	0	0	51	1.00
101124--101484	31	11.8	31	85	4	484	26	4	22	47	1.69
101070--101458	93	4.3	87	78	15	294	25	4	23	47	1.69

Tables:   1

The End!