genome.fa.s2812.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002812.1 Hibiscus syriacus cultivar Beakdansim tig00005787_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  199342

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3145--3192	21	2.3	22	79	17	57	22	29	4	43	1.72
6093--6159	30	2.2	30	100	0	134	31	8	8	50	1.64
12317--12371	27	2.0	28	89	3	85	45	1	0	52	1.11
12668--12698	16	1.9	16	93	0	53	61	0	3	35	1.12
17363--17542	95	1.9	94	88	3	272	37	17	21	23	1.94
17895--18916	57	17.8	57	89	1	1499	33	12	19	34	1.89
22888--23030	73	1.9	74	85	5	200	34	22	7	34	1.83
26922--26989	21	3.3	21	64	12	59	54	7	13	25	1.64
27244--27288	23	2.0	23	90	0	72	20	13	31	35	1.91
28648--28677	16	1.9	15	93	6	51	60	0	3	36	1.14
31523--31568	19	2.4	19	88	0	65	36	10	43	8	1.71
31532--31569	19	2.0	19	94	0	67	36	7	44	10	1.68
39573--39609	15	2.5	15	81	0	56	27	8	18	45	1.77
45326--45394	36	1.9	36	85	5	95	66	4	11	17	1.39
49315--49367	22	2.5	21	79	14	63	45	7	9	37	1.65
62584--62609	13	2.0	13	100	0	52	46	15	15	23	1.83
65886--65942	27	2.1	27	83	3	69	52	21	7	19	1.69
83903--83948	23	2.0	23	86	0	65	21	19	28	30	1.98
83972--84040	23	3.0	23	78	0	84	30	34	10	24	1.89
85233--85264	10	3.4	10	83	16	50	46	0	0	53	1.00
86825--87049	95	2.4	95	88	0	333	33	14	25	26	1.94
87380--87541	55	2.9	55	86	2	200	35	10	21	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87751--88142	68	5.8	68	91	0	622	31	14	25	28	1.94
88092--88488	81	4.9	81	87	0	521	37	10	21	30	1.88
94114--94165	24	2.1	25	92	3	88	61	13	13	11	1.57
99550--99695	75	1.9	75	92	0	247	32	22	10	34	1.88
103206--103258	20	2.7	20	100	0	106	30	15	20	33	1.93
111125--111167	18	2.4	19	80	11	63	62	4	9	23	1.44
125208--125292	3	27.7	3	88	4	125	63	1	0	35	1.02
125419--126366	76	12.5	76	96	1	1711	35	20	20	22	1.96
129588--129807	116	1.9	114	87	3	325	29	20	15	33	1.94
132099--132139	15	2.8	15	92	3	66	0	17	0	82	0.66
136742--136790	20	2.4	21	83	6	57	69	0	8	22	1.14
139055--139172	3	39.7	3	86	5	168	62	0	0	36	1.01
140191--140372	75	2.4	75	81	0	193	51	14	4	28	1.63
166670--166710	23	1.9	22	85	14	59	2	31	4	60	1.30
170772--171093	45	7.1	45	85	3	348	42	10	22	24	1.85
170772--171102	135	2.4	135	86	4	425	43	10	21	24	1.83
175479--175529	21	2.4	21	83	3	66	39	11	15	33	1.84
188915--188974	26	2.3	27	83	8	81	45	20	13	21	1.85
191343--191529	39	4.8	39	86	0	230	44	13	4	36	1.66
191517--191572	28	2.0	28	85	0	76	48	16	8	26	1.75
191596--191760	39	4.3	38	75	11	174	41	13	5	39	1.68
191596--191760	77	2.1	77	86	4	226	41	13	5	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191881--192031	44	3.6	41	83	9	180	49	11	3	35	1.57
192048--192171	57	2.1	59	83	2	171	52	8	4	34	1.52
192238--192381	57	2.5	58	80	6	168	42	12	7	37	1.71
192687--192719	14	2.3	15	89	5	50	57	15	3	24	1.52

Tables:   1

The End!