Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002814.1 Hibiscus syriacus cultivar Beakdansim tig00005792_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59376

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9167--9292
42
3.0
42
86
1
189
38
15
8
37
1.79
16231--16281
23
2.2
24
85
3
68
58
19
9
11
1.60
16455--16516
10
5.0
14
64
28
50
54
17
12
14
1.70
16455--16532
24
3.2
24
92
0
129
57
17
10
14
1.64
18138--18185
22
2.2
22
92
0
78
41
29
0
29
1.56
18152--18185
11
3.1
11
82
0
50
35
32
0
32
1.58
19014--19046
16
2.1
16
100
0
66
63
24
6
6
1.40
19107--19146
20
2.0
20
95
0
71
55
22
15
7
1.65
19129--19159
14
2.2
14
94
0
53
58
25
12
3
1.50
19106--19145
10
4.0
10
90
0
62
57
22
12
7
1.60
19116--19208
23
4.0
22
81
9
98
62
20
7
9
1.50
19175--19223
13
3.6
13
81
10
62
71
24
0
4
1.03
19167--19241
28
2.5
28
75
18
71
64
21
2
12
1.39
19468--19523
14
4.0
14
92
0
85
58
14
12
14
1.63
19479--19535
24
2.3
25
85
11
73
57
15
10
15
1.64
24006--24584
288
2.0
288
99
0
1149
35
24
14
25
1.93
26356--26389
13
2.4
15
90
9
54
20
5
2
70
1.21
27912--27974
27
2.3
27
97
0
117
36
20
7
34
1.82
29898--29931
16
2.1
16
89
10
52
38
0
0
61
0.96
33008--33055
19
2.5
20
80
10
55
22
22
29
25
1.99
38841--38876
19
1.9
18
88
5
54
38
2
0
58
1.13
45494--45523
14
2.1
14
100
0
60
30
13
33
23
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51248--51299
27
1.9
27
88
0
77
36
21
9
32
1.86
51766--51831
29
2.3
28
84
5
78
62
9
4
24
1.44

Tables:   1

The End!