Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002815.1 Hibiscus syriacus cultivar Beakdansim tig00005793_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117695

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3390--3419
15
2.0
15
100
0
60
26
26
13
33
1.93
10628--10694
29
2.3
29
86
0
107
29
28
10
31
1.90
11400--11798
199
2.0
198
95
0
717
36
6
15
41
1.74
24499--24580
29
2.8
29
90
1
119
31
14
12
41
1.83
27034--27110
24
3.0
26
90
7
106
40
0
1
58
1.06
27034--27099
3
22.0
3
80
11
73
37
0
1
60
1.06
27484--27518
16
2.2
16
90
10
54
77
5
17
0
0.96
27492--27531
20
2.1
19
86
13
55
75
2
22
0
0.93
28351--28391
20
2.0
21
85
4
57
36
2
2
58
1.24
29048--29099
20
2.6
21
76
11
56
26
7
0
65
1.20
33476--33503
2
14.0
2
100
0
56
50
0
0
50
1.00
36102--36503
84
4.7
84
88
5
551
26
12
22
37
1.91
36102--36551
84
5.1
88
86
8
529
27
13
22
37
1.91
36102--36503
176
2.3
169
87
7
562
26
12
22
37
1.91
39838--40500
76
8.4
77
88
7
956
25
19
20
34
1.96
40329--40354
1
26.0
1
100
0
52
100
0
0
0
0.00
40175--40500
175
1.9
174
95
0
589
28
17
20
33
1.95
40252--40431
98
1.8
98
95
0
324
35
15
18
30
1.92
40633--40665
15
2.2
15
94
0
57
42
0
0
57
0.98
40639--40700
3
21.0
3
79
9
65
40
0
1
58
1.08
41084--41118
16
2.2
16
90
10
54
77
5
17
0
0.96
41092--41131
20
2.1
19
86
13
55
75
2
22
0
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41883--41935
16
3.0
18
83
10
65
24
0
5
69
1.09
41949--41989
20
2.0
21
85
4
57
36
2
2
58
1.24
45108--45172
29
2.2
29
97
0
121
40
12
12
35
1.80
46396--46439
22
2.0
22
86
0
61
40
15
20
22
1.90
47041--47165
31
3.9
31
87
7
162
36
19
17
27
1.94
48559--48594
10
3.7
10
85
7
56
69
0
25
5
1.10
51635--51675
17
2.4
17
88
8
57
12
0
4
82
0.81
54707--54754
24
2.0
23
84
12
60
22
31
2
43
1.65
57272--57327
9
6.2
9
83
6
60
30
0
0
69
0.89
57274--57323
3
16.3
3
87
4
73
32
0
0
68
0.90
58828--58863
17
2.0
19
89
10
58
41
0
0
58
0.98
58752--58997
135
1.8
136
88
5
383
39
6
7
46
1.58
60894--60918
3
8.3
3
100
0
50
68
0
0
32
0.90
63196--63253
2
29.0
2
100
0
116
50
0
0
50
1.00
77746--77813
3
22.3
3
80
14
77
66
0
1
32
1.01
77746--77813
13
5.5
13
83
10
90
66
0
1
32
1.01
77746--77813
16
4.1
16
81
12
75
66
0
1
32
1.01
77746--77824
9
8.1
10
77
17
60
63
0
2
34
1.08
77842--77928
36
2.4
37
84
5
113
48
4
3
43
1.40
77874--78013
36
3.8
36
77
10
106
45
5
4
45
1.47
77961--78065
28
3.9
26
69
19
72
44
5
3
45
1.45
77998--78027
15
1.9
16
93
6
53
53
6
0
40
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77887--78141
128
2.0
127
98
0
492
43
6
4
45
1.50
78014--78216
36
5.4
37
77
10
157
44
6
3
45
1.48
78071--78242
37
4.6
37
79
10
145
45
7
3
43
1.49
78863--79415
81
6.7
80
79
5
595
24
20
25
29
1.99
78866--79415
165
3.4
163
89
2
775
24
20
25
29
1.99
82406--82450
19
2.4
19
92
3
74
66
8
11
13
1.44
83075--83107
17
1.9
17
93
0
57
72
9
12
6
1.26
84206--84233
13
2.2
13
100
0
56
85
0
0
14
0.59
85481--85558
3
26.3
3
75
17
74
64
0
2
33
1.08
85482--85558
31
2.5
31
81
12
95
63
0
2
33
1.08
85463--85559
22
4.5
21
79
13
83
63
1
3
31
1.16
85482--85558
19
3.7
22
73
19
51
63
0
2
33
1.08
85559--85648
33
2.6
33
80
5
99
47
5
3
43
1.43
85570--85726
75
2.1
76
78
8
169
45
6
4
43
1.49
85627--85735
37
2.9
36
81
6
103
44
6
3
44
1.47
85720--85749
15
1.9
16
93
6
53
53
6
0
40
1.27
85609--85857
128
2.0
122
92
5
419
43
6
4
45
1.49
85779--85917
34
4.1
34
77
13
135
43
7
2
45
1.48
85881--85958
39
2.0
38
85
11
106
42
6
6
44
1.55
88342--88388
4
11.5
4
95
4
85
0
23
0
76
0.78
90749--90789
16
2.5
17
80
7
50
48
0
0
51
1.00
92222--92289
31
2.2
31
86
0
91
29
13
14
42
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104082--104222
64
2.2
65
84
7
189
37
12
8
41
1.73
104133--104453
94
3.4
93
87
0
462
38
14
9
37
1.80
105905--105936
16
1.9
17
93
6
57
40
0
15
43
1.47
114442--114523
32
2.5
33
86
7
114
29
17
10
42
1.83
114447--114535
32
2.8
32
79
6
101
32
16
11
39
1.84

Tables:   1

The End!