genome.fa.s2816.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002816.1 Hibiscus syriacus cultivar Beakdansim tig00005794_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109438

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2815--2868	28	1.9	28	92	0	90	33	3	12	50	1.59
14936--14968	12	2.5	13	90	9	50	54	0	0	45	0.99
17456--17719	87	3.0	87	95	0	483	37	12	8	40	1.74
20358--20400	18	2.2	20	84	12	63	53	0	2	44	1.13
21510--21577	27	2.5	27	80	2	73	32	35	7	25	1.83
33945--34021	37	2.1	37	82	4	93	48	2	3	45	1.34
34618--34681	21	3.1	21	81	4	76	20	21	17	40	1.91
34596--34681	41	2.1	41	80	8	95	23	22	17	37	1.94
35334--35430	33	2.9	33	90	1	140	12	25	19	42	1.86
35409--35455	20	2.3	20	75	13	51	12	27	12	46	1.78
39023--39058	14	2.6	14	95	0	63	30	0	25	44	1.54
39165--39245	33	2.5	33	93	0	135	44	18	23	13	1.85
39165--39223	19	3.4	18	68	22	54	45	18	22	13	1.84
39253--39413	33	4.9	31	88	8	223	16	22	19	41	1.90
41704--41740	12	3.1	12	100	0	74	0	27	0	72	0.84
41915--41968	24	2.2	24	90	0	81	40	20	16	22	1.91
42756--42804	21	2.4	21	86	3	64	40	16	22	20	1.91
42789--42880	20	4.6	20	73	2	76	39	21	18	20	1.93
43171--43216	19	2.4	19	96	0	83	13	21	17	47	1.81
44830--44889	21	2.9	20	73	11	59	20	13	45	21	1.85
45269--45312	20	2.3	19	88	4	61	36	20	25	18	1.95
45297--45355	19	3.0	20	80	9	68	45	22	16	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45254--45373	19	6.5	19	71	14	65	44	20	19	15	1.87
45297--45411	51	2.2	52	86	7	155	44	23	18	13	1.85
45401--45464	19	3.7	18	74	21	73	14	21	20	43	1.87
45449--45492	20	2.2	20	88	4	63	18	25	20	36	1.95
45458--45503	20	2.3	20	84	0	56	17	21	23	36	1.94
45985--46029	18	2.5	18	88	0	72	13	15	44	26	1.83
47349--47407	20	3.0	20	87	0	73	42	22	18	16	1.89
47904--47955	20	2.6	20	93	0	86	25	21	28	25	1.99
47883--48017	20	6.7	20	78	7	85	25	17	22	34	1.96
47883--48020	61	2.3	61	83	0	177	24	17	22	35	1.95
48088--48128	21	2.0	21	90	0	64	31	29	17	21	1.96
49968--50080	60	1.9	60	87	3	165	37	15	12	35	1.85
54797--54828	2	16.0	2	100	0	64	50	0	0	50	1.00
55111--55207	20	4.9	19	76	9	70	31	22	20	24	1.98
55788--55875	20	4.4	20	85	1	88	14	15	23	45	1.84
55839--55882	20	2.2	20	91	0	70	11	13	20	54	1.69
61580--61627	19	2.5	19	68	0	51	12	8	12	66	1.44
61944--61977	11	3.1	11	82	0	50	70	5	8	14	1.31
63258--63307	18	2.8	18	100	0	100	32	20	6	42	1.76
63455--63522	20	3.4	20	95	0	118	35	26	20	17	1.95
63581--63640	20	3.0	20	95	0	111	18	20	21	40	1.92
63565--63640	40	1.9	40	88	0	116	21	19	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63581--63662	38	2.1	39	84	4	103	18	18	21	41	1.90
64142--64245	21	4.9	20	70	12	66	21	35	18	25	1.95
64167--64249	42	2.0	42	83	4	105	21	37	18	22	1.94
65641--65702	14	4.3	14	77	6	61	38	0	14	46	1.45
65817--65854	20	1.9	20	94	0	67	50	18	21	10	1.76
65897--66141	20	12.9	20	77	11	246	26	17	22	32	1.97
65917--66133	54	3.9	54	85	3	272	25	17	23	33	1.96
66112--66381	140	1.9	140	96	1	506	41	15	14	28	1.86
66441--66475	18	1.9	18	94	0	61	17	2	25	54	1.57
72399--72461	7	9.6	7	75	17	55	82	1	14	1	0.82
72398--72466	14	5.2	13	77	16	70	79	1	15	2	0.92
73350--73668	124	2.6	123	84	3	410	33	24	15	25	1.95
75691--75735	20	2.3	19	81	11	54	8	4	2	84	0.84
80599--81157	81	6.9	81	86	1	751	38	11	21	28	1.88
81209--81342	46	2.9	46	87	2	207	44	11	19	23	1.84
92748--92801	15	3.5	15	80	5	72	35	9	24	31	1.87
92762--92821	16	3.8	16	82	4	86	38	8	20	33	1.82
92748--92817	31	2.3	31	100	0	140	35	8	22	32	1.85
92899--92939	15	2.7	15	92	0	73	41	21	7	29	1.80
95449--95501	27	2.0	27	96	0	97	16	47	11	24	1.80
95500--95563	33	1.9	33	81	6	76	20	39	20	20	1.93
95986--96036	13	4.0	13	76	5	59	17	3	9	68	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95962--96036	13	5.8	13	71	14	57	20	2	8	69	1.26
96074--96144	34	2.1	34	87	10	101	19	1	15	63	1.38

Tables:   1

The End!