genome.fa.s2817.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002817.1 Hibiscus syriacus cultivar Beakdansim tig00005797_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77514

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3221--3270	6	8.2	6	77	20	50	52	0	20	28	1.47
3205--3273	26	2.7	26	90	4	104	52	2	20	24	1.60
3226--3280	26	2.2	25	90	3	83	54	1	18	25	1.53
5315--5351	15	2.6	14	91	4	56	54	0	0	45	1.00
5412--5464	23	2.3	23	96	0	97	49	9	7	33	1.64
6080--6130	26	2.0	26	84	0	66	43	35	7	13	1.73
9377--9437	21	2.9	21	77	0	68	45	26	11	16	1.81
9660--9711	24	2.2	24	86	6	70	23	7	28	40	1.82
9676--9895	59	3.8	59	76	7	218	36	9	16	38	1.80
10154--10211	27	2.1	27	81	6	64	29	13	13	43	1.83
13308--13355	25	1.9	25	95	0	87	27	12	10	50	1.73
14557--14617	31	2.0	31	90	0	95	27	6	4	60	1.42
14573--14615	20	2.2	20	86	0	59	27	4	4	62	1.35
17254--17330	31	2.5	31	91	0	127	32	15	28	23	1.95
17424--17508	45	1.9	44	85	7	118	38	4	2	54	1.34
17659--17702	2	22.0	2	100	0	88	50	0	0	50	1.00
18932--19015	22	3.8	21	79	14	57	29	4	2	63	1.28
18943--19015	22	3.3	22	80	12	60	31	2	2	63	1.23
18978--19042	35	1.9	32	79	14	69	38	0	4	56	1.20
18981--19062	43	1.9	43	87	9	123	32	2	4	59	1.31
19077--19124	18	2.7	18	87	6	62	16	10	2	70	1.24
19092--19127	14	2.7	13	87	8	54	19	5	0	75	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19097--19127	14	2.3	14	94	5	55	19	3	0	77	0.90
20323--20384	31	2.0	31	90	0	97	25	24	12	37	1.91
20399--20481	31	2.7	31	84	0	103	33	13	25	27	1.93
21595--21628	2	17.0	2	100	0	68	50	0	0	50	1.00
23402--23440	20	2.0	20	100	0	78	66	0	0	33	0.92
23394--23441	10	4.8	10	82	17	64	64	0	0	35	0.94
24049--24247	65	3.1	64	77	14	203	26	18	23	32	1.97
26881--26960	23	3.6	22	77	5	81	23	25	26	25	2.00
32790--32981	65	3.0	63	78	11	185	26	18	24	30	1.98
33375--33447	34	2.1	34	82	9	87	43	20	8	27	1.80
34004--34063	28	2.1	29	81	9	70	45	0	1	53	1.10
34033--34104	24	3.0	23	82	8	74	45	0	2	51	1.15
35539--35568	15	2.0	15	93	0	51	0	50	6	43	1.28
35516--35567	21	2.5	21	76	14	54	3	51	1	42	1.31
35999--36034	19	1.9	18	88	5	54	11	8	33	47	1.69
39034--39081	19	2.4	21	80	13	57	62	0	2	35	1.07
39274--39319	14	3.2	14	93	3	74	45	2	0	52	1.13
39284--39329	14	3.3	14	90	6	58	56	0	0	43	0.99
39274--39329	28	2.0	29	82	10	71	50	1	0	48	1.11
40762--40843	29	2.8	29	94	1	137	32	14	9	42	1.79
45531--45612	29	2.8	29	94	1	137	32	14	9	42	1.79
49827--49866	21	1.9	21	85	10	55	32	7	2	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50611--50687	40	1.9	40	82	10	95	37	1	2	58	1.20
53004--53037	14	2.4	14	95	0	59	61	14	14	8	1.55
58280--58533	95	2.7	94	84	4	316	31	16	17	33	1.93
62215--62269	20	2.7	19	81	10	65	70	0	7	21	1.11
62425--62493	34	2.0	34	83	10	88	68	2	1	27	1.13
63669--63717	20	2.4	20	80	10	55	16	18	34	30	1.93
63771--63812	17	2.5	17	88	0	57	52	2	0	45	1.13

Tables:   1

The End!