Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002818.1 Hibiscus syriacus cultivar Beakdansim tig00005798_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52327

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7143--7176
18
1.9
18
88
5
52
14
26
32
26
1.95
10708--10801
42
2.2
42
94
1
161
52
12
4
30
1.59
12000--12043
20
2.3
19
85
11
63
20
25
9
45
1.80
12006--12043
20
1.9
20
94
0
67
21
23
10
44
1.83
17793--17827
10
3.5
10
85
14
54
34
25
0
40
1.56
17796--17834
10
3.6
12
80
19
50
28
25
0
46
1.53
17965--18289
111
2.9
111
96
0
596
37
7
10
44
1.66
19796--19835
18
2.2
18
100
0
80
25
32
22
20
1.98
20172--20203
9
3.6
9
95
0
55
34
25
34
6
1.81
20243--20320
35
2.2
35
80
13
90
26
8
10
53
1.64
35122--35257
70
1.9
70
93
0
236
33
18
13
34
1.89
38347--38381
18
1.9
18
88
0
52
45
0
0
54
0.99
38520--38577
24
2.4
25
83
8
68
32
0
5
62
1.18
40125--40224
42
2.4
42
81
0
110
21
35
19
25
1.96
40202--40253
21
2.5
21
84
12
79
17
34
26
21
1.95
40775--40875
32
3.1
32
87
4
132
53
3
2
39
1.35
41120--41196
30
2.5
31
82
2
102
36
10
33
19
1.86
41461--41497
19
2.0
18
89
5
56
18
10
37
32
1.86
41754--42255
124
4.0
126
89
4
791
33
21
22
21
1.97
43864--44141
139
2.0
139
97
0
529
25
20
19
35
1.95
46258--46385
51
2.5
51
82
6
143
15
32
27
24
1.95
49413--49572
65
2.5
65
88
1
232
28
16
25
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49523--49569
19
2.5
19
83
10
62
25
17
31
25
1.97
49413--49619
65
3.2
62
80
11
211
28
16
24
30
1.97
49787--49826
20
2.0
21
85
14
57
45
7
5
42
1.54
50060--50101
2
21.0
2
100
0
84
50
0
0
50
1.00

Tables:   1

The End!