Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002820.1 Hibiscus syriacus cultivar Beakdansim tig00005800_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76096

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2913--2988
22
3.4
23
91
8
106
71
0
7
21
1.11
5816--5860
21
2.1
21
88
8
65
42
11
2
44
1.52
7920--8245
151
2.2
149
86
8
439
34
18
7
39
1.79
10881--10933
13
4.6
12
75
22
51
28
18
33
18
1.95
10860--10935
33
2.3
33
95
0
134
28
21
31
18
1.97
10881--10914
12
2.7
13
90
4
52
26
20
35
17
1.95
10894--10959
21
3.3
21
87
8
93
28
21
30
19
1.98
11010--11067
21
2.8
21
97
0
107
24
17
36
22
1.95
12977--13005
14
2.0
15
93
6
51
6
37
0
55
1.27
14408--14482
20
3.7
20
83
3
87
30
18
29
21
1.97
14502--14612
19
5.8
20
79
13
110
26
15
33
25
1.95
14502--14614
40
2.9
39
82
15
137
25
15
32
25
1.96
14696--14755
30
2.0
30
96
0
111
45
20
5
30
1.72
15087--15130
22
2.0
22
90
0
70
31
20
20
27
1.97
15087--15149
22
3.0
20
83
6
63
28
20
23
26
1.99
20125--20157
17
1.9
17
93
0
57
42
15
9
33
1.78
29617--29646
14
2.1
14
93
0
51
50
6
0
43
1.28
30638--30846
107
2.0
105
88
3
312
42
8
12
35
1.74
36955--37507
258
2.2
253
86
8
771
41
18
12
28
1.87
39113--39304
96
2.0
96
98
0
375
31
16
18
33
1.93
43400--43576
32
5.5
32
83
2
185
38
14
16
30
1.89
43395--43576
96
1.9
96
83
0
238
38
14
16
30
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45808--45832
7
3.6
7
100
0
50
84
0
0
16
0.63
55805--55859
23
2.4
23
93
0
92
9
21
16
52
1.71
56796--56824
2
15.0
2
92
7
51
51
0
0
48
1.00
61987--62044
30
2.0
29
83
10
73
39
6
22
31
1.80
64249--64298
20
2.5
20
86
0
73
30
36
10
24
1.88
64290--64336
20
2.3
20
96
0
85
34
25
19
21
1.96
64330--64516
20
9.4
20
74
9
114
42
23
13
20
1.88
64310--64537
40
5.7
41
73
17
167
40
22
14
21
1.90
64289--64456
60
2.8
59
77
10
153
38
24
16
20
1.92
64310--64461
60
2.5
59
75
9
155
40
23
15
19
1.90
64504--64595
19
4.7
19
80
8
87
35
20
11
31
1.89
64752--64790
16
2.5
15
84
8
51
28
5
0
66
1.12
65386--65419
12
2.8
12
90
0
50
55
29
0
14
1.40
65545--65598
24
2.2
24
90
0
81
22
16
20
40
1.91
67852--67887
18
2.0
18
94
0
63
55
25
2
16
1.55
68340--68514
66
2.6
64
88
8
244
53
16
2
28
1.55
69863--69961
21
4.7
21
76
15
80
25
21
30
23
1.99
72673--72799
20
6.3
20
94
0
209
17
11
22
48
1.80
72793--72860
20
3.3
20
68
11
57
27
16
23
32
1.96
72673--72824
60
2.5
60
87
4
182
19
11
22
46
1.82
73035--73133
36
2.8
36
96
0
180
25
15
18
41
1.89

Tables:   1

The End!