Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002822.1 Hibiscus syriacus cultivar Beakdansim tig00005804_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92225

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1215--1241
3
9.0
3
100
0
54
66
0
0
33
0.92
1240--1273
3
11.3
3
100
0
68
32
0
0
67
0.91
2083--2142
27
2.3
26
82
5
75
53
5
1
40
1.33
2821--3306
84
5.9
85
84
7
617
26
18
19
35
1.95
2821--3282
161
2.8
161
84
8
587
25
18
20
35
1.95
9155--9261
23
4.9
21
75
16
94
74
2
7
14
1.15
9158--9261
20
4.8
21
78
17
90
75
2
7
13
1.12
9156--9261
41
2.4
45
80
14
125
75
2
7
14
1.13
9160--9209
17
2.7
20
87
9
70
78
4
8
10
1.09
9190--9261
22
3.0
24
76
21
78
75
1
8
15
1.11
17903--17943
16
2.6
16
96
0
73
29
12
29
29
1.93
19588--19645
19
3.1
19
72
2
55
25
8
0
65
1.21
19833--19865
16
2.1
16
88
11
50
15
9
0
75
1.03
19879--19941
29
2.2
27
79
20
67
31
3
1
63
1.19
19917--19956
21
1.9
21
84
0
53
32
2
0
65
1.06
20036--20092
16
3.4
16
74
13
53
17
8
0
73
1.07
20030--20076
16
2.6
17
80
16
51
17
8
0
74
1.05
20045--20114
19
3.7
19
74
18
58
18
10
0
71
1.13
20046--20133
38
2.3
40
80
9
103
21
6
0
71
1.09
28129--28563
124
3.6
123
84
3
562
32
22
17
27
1.96
30392--30439
19
2.5
18
83
10
51
31
2
0
66
1.03
30416--30521
16
6.7
16
70
18
62
21
6
1
69
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30490--30537
21
2.3
20
80
13
53
22
4
2
70
1.15
30463--30519
28
2.1
27
84
15
73
24
3
1
70
1.13
30617--30676
29
2.2
28
81
16
74
20
5
0
75
0.99
39767--40030
127
2.0
130
88
4
401
47
13
15
22
1.81
43259--43293
18
1.9
18
88
0
52
28
17
0
54
1.43
44600--44689
45
2.0
45
84
4
119
34
23
20
22
1.97
45662--45710
25
2.0
25
95
0
89
44
2
46
6
1.39
45662--45718
22
2.4
23
85
8
71
45
1
45
7
1.40
48892--48926
18
1.9
18
88
0
52
28
17
0
54
1.43
50006--50092
42
2.0
45
82
6
108
37
24
17
20
1.93
50766--50820
28
2.0
28
100
0
110
47
0
45
7
1.30
51525--51884
132
2.7
130
80
5
402
23
18
30
27
1.97
51965--52041
20
3.8
20
94
1
127
36
18
27
18
1.94
51899--52093
106
1.8
106
87
2
293
38
15
24
21
1.92
52068--52311
102
2.4
99
75
8
242
39
11
19
29
1.86
52136--52458
138
2.3
137
79
6
330
37
13
17
30
1.89
52234--52333
36
2.7
37
89
3
148
39
13
20
28
1.89
53492--53524
16
2.1
16
94
0
57
18
15
24
42
1.88
53636--53684
18
2.9
17
79
8
55
4
12
10
73
1.22
54794--55028
114
2.1
114
86
3
330
30
19
21
28
1.97
57161--57191
2
16.0
2
93
6
55
48
0
0
51
1.00
58081--58148
32
2.1
34
88
5
104
32
2
7
57
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58571--58627
21
2.7
22
83
5
73
17
28
17
36
1.93
58590--58649
22
2.8
23
82
12
65
18
35
16
30
1.93
58591--58666
20
3.7
21
82
10
77
18
31
17
32
1.94
59609--59640
5
6.2
5
92
7
55
62
0
0
37
0.95
64626--64687
15
3.8
16
80
6
63
66
0
3
30
1.08
65596--65785
60
3.2
58
78
8
177
32
23
4
40
1.75
65962--66017
29
1.9
29
85
0
76
42
0
16
41
1.48
65915--66066
60
2.5
60
79
2
171
44
3
20
31
1.70
67097--67136
2
20.0
2
89
0
62
45
5
0
50
1.23
68795--68861
26
2.6
26
83
6
82
34
10
5
49
1.62
79479--79520
20
2.2
19
95
4
75
26
9
9
54
1.63
80315--80406
33
2.8
32
90
6
139
39
15
14
31
1.87
80338--80391
18
3.2
17
70
24
51
40
14
12
31
1.84
81078--81262
50
3.7
50
77
5
196
43
17
5
32
1.73
81150--81192
22
1.9
22
85
4
59
44
13
6
34
1.72
81128--81216
26
3.6
24
77
13
74
44
14
6
33
1.72
81653--81728
31
2.5
31
84
0
107
28
7
11
51
1.67
84296--84346
19
2.6
20
90
3
77
43
5
15
35
1.71

Tables:   1

The End!