Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002824.1 Hibiscus syriacus cultivar Beakdansim tig00005807_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94471

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1193--1233
19
2.1
20
90
4
66
26
21
12
39
1.89
3720--3746
4
6.8
4
100
0
54
74
0
0
25
0.83
7927--7956
15
2.1
15
93
6
53
80
0
6
13
0.91
8638--8672
18
1.9
18
94
0
61
57
14
8
20
1.63
9278--9358
23
3.5
23
73
17
60
51
2
1
44
1.22
9414--9477
12
5.4
12
72
20
55
50
1
1
46
1.20
9414--9477
23
2.7
23
85
4
74
50
1
1
46
1.20
9754--9795
15
2.9
15
82
3
59
33
21
0
45
1.52
10465--10521
25
2.3
25
100
0
114
49
22
14
14
1.79
10477--10521
14
3.4
14
70
17
51
51
20
13
15
1.76
12860--12924
31
2.1
31
85
0
85
44
10
18
26
1.82
14585--14619
15
2.3
15
95
0
61
17
0
8
74
1.06
15992--16030
17
2.3
16
83
12
51
12
7
2
76
1.09
17514--17774
95
2.7
96
86
4
366
31
17
18
32
1.94
18901--20289
84
16.5
84
82
1
1467
34
23
18
24
1.96
20828--20865
16
2.4
16
86
4
51
44
2
2
50
1.30
22094--22128
15
2.3
15
90
0
52
14
2
8
74
1.17
22405--22435
14
2.1
15
94
5
55
25
6
0
67
1.14
22909--22933
4
6.2
4
100
0
50
72
0
0
28
0.86
22961--23034
11
6.7
11
80
0
76
39
25
13
21
1.90
25363--25427
21
3.1
20
80
8
76
50
27
0
21
1.49
25509--25538
14
2.1
14
93
0
51
43
0
6
50
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28260--28315
28
2.0
28
100
0
112
50
14
10
25
1.75
34413--34702
145
2.0
146
98
0
564
27
16
17
38
1.91
43094--43169
39
1.9
39
89
0
116
34
5
14
46
1.67
53075--53101
13
2.1
13
100
0
54
7
22
22
48
1.75
55105--55146
2
21.0
2
100
0
84
50
0
0
50
1.00
55331--55392
16
4.0
15
73
18
56
72
0
3
24
0.99
55655--55697
18
2.5
17
85
7
61
67
2
4
25
1.22
55575--55698
62
2.0
59
82
11
144
60
1
3
34
1.22
56054--56156
37
2.8
36
79
4
116
33
11
11
43
1.77
57971--58005
12
2.8
13
87
12
56
57
0
0
42
0.99
58045--58093
19
2.7
18
87
9
73
73
6
4
16
1.19
64712--64746
12
2.8
13
87
12
56
57
0
0
42
0.99
64786--64834
19
2.7
18
87
9
73
73
6
4
16
1.19
65603--65668
17
3.6
18
75
15
64
1
16
10
71
1.21
65603--65670
19
3.7
18
71
13
59
1
16
10
72
1.19
66126--66204
3
26.7
3
92
2
133
63
1
1
34
1.11
68783--68856
25
3.0
24
82
7
87
56
4
0
39
1.18
68798--68857
7
7.7
7
84
14
66
56
3
0
40
1.16
68798--68857
16
3.9
14
81
16
66
56
3
0
40
1.16
70160--70422
37
7.2
35
77
16
170
47
4
2
45
1.35
70169--70460
74
4.1
72
80
12
293
47
4
3
45
1.37
70405--70498
33
3.0
30
83
12
100
42
1
6
50
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71716--71771
2
29.0
2
83
7
71
46
3
0
50
1.19
71840--71890
20
2.5
20
79
17
61
21
0
7
70
1.12
77172--77734
84
6.8
84
79
6
578
29
24
20
25
1.99
77172--77706
165
3.2
164
86
3
725
29
24
20
25
1.99
77172--77734
249
2.3
244
82
5
648
29
24
20
25
1.99
84762--84800
13
3.0
13
100
0
78
69
7
0
23
1.14
92976--93013
18
2.1
18
95
0
67
47
7
10
34
1.67

Tables:   1

The End!