Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002825.1 Hibiscus syriacus cultivar Beakdansim tig00005809_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70819

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
770--887
31
3.8
31
83
7
127
37
21
15
26
1.93
3176--3254
20
3.8
20
76
17
70
21
20
34
24
1.97
3478--3535
18
3.1
18
79
13
71
46
8
13
31
1.74
6528--6577
21
2.4
21
93
6
84
22
22
30
26
1.99
8395--8437
2
21.5
2
100
0
86
51
0
0
48
1.00
9459--9566
30
3.5
30
78
10
110
35
21
16
26
1.95
9459--9578
31
3.9
31
78
5
118
36
20
17
25
1.94
9459--9578
63
1.9
62
86
1
168
36
20
17
25
1.94
11516--11601
44
2.0
44
90
0
136
32
24
19
23
1.98
11566--11623
21
2.8
20
82
10
62
39
29
13
17
1.88
13392--13469
31
2.5
31
85
0
102
37
14
10
38
1.80
15541--15591
23
2.2
23
92
0
84
19
41
1
37
1.63
21311--21351
20
2.0
21
85
4
57
41
4
0
53
1.22
26691--26734
23
1.9
23
100
0
88
50
20
0
29
1.49
27636--27677
21
2.0
21
90
4
68
42
7
11
38
1.69
32312--32353
21
2.0
20
86
4
57
40
7
14
38
1.73
33769--33794
2
13.0
2
100
0
52
50
0
0
50
1.00
34056--34452
158
2.5
158
86
3
514
48
6
17
28
1.70
36566--36611
18
2.6
18
100
0
92
63
4
10
21
1.44
45190--45229
21
1.9
21
89
0
62
25
40
25
10
1.86
50616--50655
17
2.4
16
80
8
53
70
0
20
10
1.16
51289--51348
28
2.2
29
78
21
69
51
3
6
38
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59088--59130
21
2.0
22
86
4
61
34
27
13
23
1.93
60387--60545
65
2.5
65
86
5
207
30
22
18
27
1.98
68915--69144
64
3.6
62
77
14
209
29
23
19
27
1.98
69095--69143
19
2.6
19
84
9
57
24
28
20
26
1.99

Tables:   1

The End!