Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002826.1 Hibiscus syriacus cultivar Beakdansim tig00005811_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62928

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
655--704
21
2.4
21
93
6
84
26
30
22
22
1.99
3683--3740
18
3.1
18
79
13
71
31
13
8
46
1.74
3961--4039
20
3.8
20
76
17
70
24
34
20
21
1.97
6134--6187
23
2.3
23
81
15
58
48
1
14
35
1.55
6347--6465
30
3.8
31
85
5
136
26
15
21
36
1.93
8959--9011
23
2.3
23
93
0
88
47
15
26
11
1.79
9991--10040
22
2.3
21
83
13
66
24
26
4
46
1.70
17140--17180
2
20.5
2
100
0
82
51
0
0
48
1.00
25591--25631
21
2.0
21
100
0
82
68
4
0
26
1.10
25781--25892
43
2.7
42
78
8
122
27
16
32
23
1.96
25825--26397
130
4.4
134
74
9
482
25
16
31
26
1.97
25842--26303
134
3.5
132
75
9
442
25
15
32
27
1.95
25829--26397
260
2.2
262
91
2
935
25
16
31
26
1.97
26533--26754
66
3.4
63
79
12
238
41
13
16
29
1.85
26572--26754
68
2.9
61
81
13
226
43
13
14
27
1.84
27931--28005
22
3.1
25
78
20
86
0
17
5
77
0.95
27939--28046
22
4.7
21
75
20
92
0
18
6
75
1.02
27939--28012
11
6.4
12
78
18
77
0
16
4
79
0.87
27928--28029
25
4.2
25
74
15
90
0
19
5
74
1.02
48015--48082
34
2.0
34
82
5
84
25
4
23
47
1.70
54604--54706
48
2.1
48
87
0
152
33
27
10
28
1.90
60770--60812
21
2.2
19
83
8
50
69
6
4
18
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62425--62473
15
3.5
15
72
16
59
14
36
6
42
1.70
62414--62475
27
2.3
27
100
0
124
12
33
6
46
1.68

Tables:   1

The End!