Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002827.1 Hibiscus syriacus cultivar Beakdansim tig00005812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80602

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2486--2655
89
1.9
88
86
1
241
30
19
25
24
1.98
4160--4250
7
12.7
7
80
17
75
2
13
1
83
0.80
4159--4250
20
4.7
19
80
11
105
2
13
1
83
0.79
4169--4237
27
2.6
27
83
4
86
0
15
1
82
0.74
4153--4264
26
4.0
28
78
16
97
4
13
0
81
0.89
4152--4262
11
10.3
10
76
19
84
3
13
0
81
0.86
4153--4250
1
98.0
1
68
0
52
3
12
1
83
0.81
39137--39192
12
4.7
13
72
18
59
23
17
19
39
1.92
39129--39184
23
2.4
23
90
0
85
28
16
19
35
1.93
39178--39227
24
2.1
23
85
3
64
24
24
20
32
1.98
39141--39218
12
6.6
12
70
7
52
25
19
20
34
1.96
40402--40435
7
4.9
7
85
0
50
20
0
38
41
1.53
40582--40629
19
2.5
19
83
6
53
50
6
2
41
1.39
43065--43096
15
2.1
15
100
0
64
34
6
0
59
1.23
43568--43599
15
2.1
15
100
0
64
34
6
0
59
1.23
48755--48784
2
15.0
2
92
0
51
46
0
3
50
1.18
57846--57885
21
1.9
21
94
0
71
25
25
22
27
2.00
60899--61215
43
7.3
42
75
11
216
51
6
16
25
1.69
64932--66129
603
2.0
603
97
0
2281
31
17
22
28
1.97
73499--73540
12
3.7
12
81
6
52
50
45
0
4
1.23
73490--73536
24
2.0
24
87
8
69
46
46
0
6
1.28
78250--78282
12
2.5
13
90
9
50
12
12
15
60
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79106--79581
241
2.0
239
82
7
572
41
17
12
28
1.85

Tables:   1

The End!