Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002828.1 Hibiscus syriacus cultivar Beakdansim tig00005817_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59359

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
501--548
3
16.3
3
78
4
53
35
4
2
58
1.29
768--810
22
2.0
22
86
4
61
9
46
27
16
1.77
1957--2033
31
2.6
29
76
8
82
16
12
11
58
1.63
1957--2181
60
3.8
59
74
8
170
22
13
8
55
1.64
1957--2140
30
6.2
29
74
10
138
21
11
7
59
1.56
5899--5936
13
2.9
14
84
11
53
84
2
10
2
0.83
5898--5936
14
2.7
15
84
4
53
84
2
10
2
0.81
5930--5955
12
2.2
12
100
0
52
65
0
34
0
0.93
6967--7029
32
2.0
32
90
0
99
26
15
26
30
1.96
7099--7416
66
4.9
66
75
11
291
26
15
15
42
1.86
7294--7385
30
3.1
29
86
10
125
31
18
14
35
1.90
7449--7684
91
2.6
91
82
7
273
27
29
15
27
1.96
8054--8115
3
21.3
3
83
6
83
35
1
1
61
1.16
10023--10061
20
1.9
21
84
5
53
10
0
30
58
1.31
10322--10628
111
2.8
111
90
1
474
29
14
24
31
1.95
15315--15363
4
11.5
4
80
20
55
69
0
2
28
1.00
15315--15363
18
2.9
17
85
14
66
69
0
2
28
1.00
22168--22208
18
2.3
18
91
4
66
29
4
2
63
1.28
22278--22602
111
2.9
111
97
0
596
36
7
12
44
1.70
28239--28368
51
2.5
51
83
4
156
22
28
33
16
1.95
33222--33321
2
50.0
2
100
0
200
50
0
0
50
1.00
39137--39171
18
1.9
18
94
0
61
40
31
25
2
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54583--54654
19
3.7
19
76
7
81
37
19
23
19
1.94
54580--54673
40
2.3
40
98
0
179
38
18
24
19
1.93
54600--54673
21
3.7
20
75
8
78
37
18
25
17
1.93
54662--54757
20
4.7
20
79
3
84
34
25
17
22
1.96
54659--54736
41
1.9
41
86
0
111
39
21
16
21
1.92
54662--54777
21
5.7
19
74
10
61
35
24
17
23
1.95
54944--54986
21
2.0
22
90
4
70
18
46
16
18
1.84
56588--56631
18
2.5
18
81
3
54
27
40
15
15
1.88
57097--57180
19
4.4
19
85
4
98
40
23
21
14
1.90
57147--57210
18
3.8
17
74
21
64
48
20
18
12
1.80
57227--57283
14
3.9
14
79
20
71
8
17
26
47
1.77
57222--57299
31
2.4
33
91
6
133
10
19
24
46
1.81
57272--57338
19
3.5
19
83
4
89
14
23
23
37
1.93
57284--57338
20
2.8
19
89
5
83
16
25
23
34
1.95
59182--59217
14
2.6
14
90
0
54
30
0
22
47
1.52

Tables:   1

The End!