Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002829.1 Hibiscus syriacus cultivar Beakdansim tig00005820_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 137735
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Found at i:3665 original size:65 final size:65
Alignment explanation
Indices: 3532--3690 Score: 189
Period size: 65 Copynumber: 2.5 Consensus size: 65
3522 GCACTAAGAA
* * * *
3532 TGCATCAATGCATCAAGTGCATTCGATG-TTTCAAAATAGCCAGAGTGCATCGATGCATGGCTGG
1 TGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATACATGGCTGG
* * *
3596 TGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGTATCGATACATGG-TA
1 TGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAATAGCCACAGTGCATCGATACATGGCT-
*
3659 TG
64 GG
* *
3661 TGCATCGATGCATGAAATGCATTTGATGTT
1 TGCATCGATGCATCAAATGCATTCGATGTT
3691 AACTAACTTC
Statistics
Matches: 82, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
64 27 0.33
65 52 0.63
66 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (65 bp):
TGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATACATGGCTGG
Found at i:4119 original size:31 final size:29
Alignment explanation
Indices: 4064--4148 Score: 82
Period size: 31 Copynumber: 2.8 Consensus size: 29
4054 TGTTTAATGA
* *
4064 CCAAAATGTAAATTTTGAAAGTTTAGTAG
1 CCAAAATATAAATTTTAAAAGTTTAGTAG
**
4093 CCAAAATATAAACTTTGTAAAAGTTTAGGGG
1 CCAAAATATAAA-TTT-TAAAAGTTTAGTAG
4124 ACCAAAA-ATATAATTTTCAAAAGTT
1 -CCAAAATATA-AATTTT-AAAAGTT
4149 ATGTATTCTC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
29 11 0.23
30 4 0.09
31 24 0.51
32 8 0.17
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.32
Consensus pattern (29 bp):
CCAAAATATAAATTTTAAAAGTTTAGTAG
Found at i:13287 original size:541 final size:542
Alignment explanation
Indices: 11783--35104 Score: 37242
Period size: 541 Copynumber: 43.3 Consensus size: 542
11773 ACATGGTTAA
* * *
11783 TTTAATAAAAAGATGACAAATGCTAGTGACCAAAAAAAATAAATTGAAAGTTTAGTGGCCAAAAT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* ** *
11848 ATAAACTTAGGAAATGTTTAGGGACCAAAATGCTATTTTCCCAAAAAATTAATTTTATCATGTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
11913 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGA-TTTTCATACTTGTATTATTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
11977 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
*
12042 GGATGATAAGCCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
* *
12107 ATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAACTGACAAGATTATAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
12172 TTTTGGAAAATTACATGGAAGAAA-TAGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
391 TTTTGGAAAATTACATGGAAGAAACT-GGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
*
12236 ATGAACAAATTGACATGTAGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
12301 ATTAAAATGAA-TTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* *
12323 TTTAATAAAAAGATGACAAATGCTAGTGACCAAAATAAATAAATTAAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* *
12388 ATAAACTTAGGAAAAGTTTAGGGACCAAAATTCTATTTTCCCAAAAAAGAAATTTTATCATGTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * * *
12453 TTGAATAGTTTACCACCCAGAGTTTTCAAGTCACTTGGCTTTTTCATACTTGTATTAATGGGTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
12518 AAAGCTATAAAATTTAAGAAAAATTCGG---AT--AATCAAATCAGATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
* * * *
12578 GAATGATAAGGCAATGCAAATAATATCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACA
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
* * * *
12643 ATTGGATTTAAGTTGATTTTCCAGGTTAAATATAGGTCGTTAGATGAAAAATAACAAGATTGTAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
* * * * *
12708 TTCTGGAAAATTACAAGGAAGAAACTAGTAATTATCAATTTGTTGGTTCATTTTTTAATTTTGGA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
* *
12773 TGAACAAATTGACATGTGGAAAGTTATGAAGCATGTGATTACAAGGGAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
*
12838 TTAAAGTGAATTTTTAATTCAT
521 TTAAAATGAATTTTTAATTCAT
* **
12860 TTTAATAAAAAGATGACAAATGCTAGTGACCAAAATAAATAAATCAAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
12925 ATAAACTTAGGAAACGTTTAGGGACCAAAATGCTATTTTCCCAAAAAATAAATTTTATCCTGTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* *
12990 TTGAATAGTTTACCACCAAGAGTTTTCAAGTGAGTTGGA-TTTTCATAGTTGTATTATTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
13054 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
*
13119 GGATGATAAGGCAATGCTAATAATGTTATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
*
13184 ATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
* *
13249 TTTTGGAAAATTACATGGAAGAAATTGATAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
*
13314 TGAACAAATTGACATGTAGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
13379 TTAAAATGAATTTTTAATTCAT
521 TTAAAATGAATTTTTAATTCAT
* *
13401 TTTAATAAAAAGATGACAAATGCTAGTGACCAAAATAAATAAATTAAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
*
13466 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCATGTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * * *
13531 TTGAATAGTTTACCACCCAGAGTTTTCAAGTCACTTGGATTTTTCGTACTTGTATTAATGGGTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
13596 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
* * *
13661 GGATGATAAGGCAATGCAAATAATATCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACA
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
* * *
13726 ATTGGATTTAAGTTGATTTTCCAGGTTAAATATAGGTCGTTGGATGAAAAATAACAAGATTGTAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
* * * * *
13791 TTCTGGAAAATTACAAGGAAGAAACTAGTAATTATCAATTTGTTGGTTCATTTTTTAATTTTGGA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
* * *
13856 TGAACAAATTGACATGTGGAAAGTTATGAAGCATATGATTACAAGGGAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
*
13921 TTAAAGTGAA-TTTTAATTCAT
521 TTAAAATGAATTTTTAATTCAT
* **
13942 TTTAATAAAAAGATGACAAATGCTAGTGACCAAAATAAATAAATCAAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* *
14007 ATAAACTTAGGAAACA-TTTAGGGACCAAAATGCTATTTTCCCAAAAAATAAATTTTATCCTGTA
66 ATAAACTTAGGAAA-AGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* *
14071 ATTG-ATAGTTTACCACCAAGAGTTTTCAAGTGAGTTGGA-TTTTCATAGTTGTATTATTGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
*
14134 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTAA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* * * **
14199 AGGATGATAAGGGAGTGCTAATAATGTTATTTCCACAATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* *
14264 TATTAGATTTAAGTTGATTTTCCATGTT-AATATAGGTCGTTGGATG-AAAATGAAAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* * *
14327 ATTTTGTAAAATTACATGGAAGAAAGTGGTAACTATCAATTTGCTGGTTCATTTTTTACTTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
*
14392 ATGAACAAATTGA-ATGTGGAAAGTTATTAAGCATGTAATTACAAGGCAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
14456 ATTAAAATGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* * *
14479 TTTAATAAAAAGATGACAAATTTTAGTGACCTAAATAAATATATTGAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
14544 ATAAACTTAGGAAATGTTTAAGGACCAAAATGCTATTTTCCC-AAAAAGAAATTTTATCTTTTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * * *
14608 TTGAATAGTTTGCCATCAAGAATTTTAAAGTCAGTTGGATTTTTCATACTTGTATTAGTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
*
14673 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAAATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
14738 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
*
14803 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTGTAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
* * * * * *
14868 TTCTGGAAAATTACAAGGAAGAAACTGGAAATTATCAATTTGTTGGTTCGTTTTTTACTTTTGAA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
* * *
14933 TGAACAAATTGACATGTGGCAAGTTATGAAGCATGTGATTACAAGGGAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
*
14998 TTAAAGTGAATTTTTAATTCAT
521 TTAAAATGAATTTTTAATTCAT
15020 TTTAAT-AAAAGATGACAAAT-TTAAGTGACC-AAATAAAT-AATTGAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATGTT-AGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
* * * *
15081 TATAAACTTTGGAAAAGTTTAAGGACCAAAATGCTATTTTCCCAAAAAATAAATTTTATCCTGTA
65 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* *
15146 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTGAGTTGGA-TTTTCATAGTTGTATTATTGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
15210 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
*
15275 AGGATGATAAGGCAATGCTAATAATGTTATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* *
15340 TATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGAAAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* * *
15405 ATTTTGTAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTCGATCATTTTTTACTTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
* * *
15470 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATATGATTACGAGGCAAACATGGTCATTTAGA
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
*
15535 AATAAAATGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* *
15558 TTTAATAAAAAGATGACAAAT-TTAAGTGACCCAAATAAATATATTGAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATGTT-AGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
*
15622 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCATGTA
65 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* * * *
15687 ATTGAATAGTTTACCACCCAGAGTTTTCAAGTCACTTGGATTTTTCATACTTGTATTAATGGGTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
15752 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* *
15817 AGGATGATAAGGCAATGCAAATAATATCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* * * *
15882 AATTGGATTTAAGTTGATTTTCCAGGTT-AATATAGGTCGTTGGATG-AAAATAACAAGATTGTA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* * * * * *
15945 ATTCTAGAAAATTACAAGGAAGAAACTAGTAATTATCAATTTGTTGGTTCATTTTTTAATTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
* * *
16010 ATGAACAAATTGACATGTGGAAAGTTATGAAGCATATGATTACAAGGGAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
*
16075 ATTAAAGTGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* **
16098 TTTAATAAAAAGATGACAAATGCTAGTGACCAAAATAAATAAATCAAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* *
16163 ATAAACTTAGGAAACA-TTTAGGGACCAAAATGCTATTTTCCCAAAAAATAAATTTTATCCTGTA
66 ATAAACTTAGGAAA-AGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* *
16227 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTGAGTTGGA-TTTTCATAGTTGTATTATTGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
*
16291 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTAA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* * * **
16356 AGGATGATAAGGGAGTGCTAATAATGTTATTTCCACAATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* *
16421 TATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGAAAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* * *
16486 ATTTTGTAAAATTACATGGAAGAAAGTGGTAACTATCAATTTGCTGGTTCATTTTTTTACTTTTG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCA-TTTTTTACTTTTG
* *
16551 GATGAACAAATTGAAATGTGG-AAGTTATTAAGCATGTAATTACAAGGCAAACATGGTCATTTAG
454 GATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAG
16615 CATTAAAATGAATTTTTAATTCAT
519 CATTAAAATGAATTTTTAATTCAT
* *
16639 TTTAATAAAAAGATGACAAATTTTAGTGACCCAAAT--AT--ATTGAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
16700 ATAAACTTAGGAAATGTTTAAGGACCAAAATGCTATTTTCCC-AAAAAGAAATTTTATCTTTTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * * *
16764 TTGAATAGTTTGCCATCAAGAATTTTAAAGTCAGTTGGATTTTTCATACTTGTATTAGTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
16829 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCA-A-TTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
16892 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
*
16957 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTGTAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
* * * * *
17022 TTCTGGAAAATTACAAGGAAGAAACTGGAAATTATCAATTTGTTGGTTCGTTTTTTACTTTT-GA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
* * *
17086 TGAACAAATTGACATGTGGCAAGTTATGAAGCATGTGATTACAAGGGAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
*
17151 TTAAAGTGAATTTTTAATTCAT
521 TTAAAATGAATTTTTAATTCAT
17173 TTTAAT-AAAAGATGAC-AAT-TTAAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATGTT-AGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
* * *
17235 TATAAACTTAGGAAAAGTTTATGGACCAAAATG--ATTTTCCC-AAAAATAAATTTTATCCTGTA
65 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* *
17297 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTGAGTTGGA-TTTTCATAGTTGTATTATTGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
17361 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATA-TTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* *
17425 TGGATGATAAGGCAATGCTAATAATGTTATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* *
17490 TATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGAAAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* *
17555 ATTTTGTAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGATCATTTTTTACTTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
*
17620 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATATGATTAC-AGGCAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
*
17684 AATAAAATGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* *
17707 TTTAATAAAAAGATGACAAAT-TTAAGTGACCCAAAT-AATATATTGAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATGTT-AGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
* *
17770 TATAAACTT-GGAAAAGTTTAGGGACCAAAATGCTATTTT--CTAAAAAGAAATTTTATCATGTA
65 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* * * *
17832 ATTGAATAGTTTACCACCCAGAGTTTTCAAGTCACTTGGATTTTTCATACTTGTATTAATGGGTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
17897 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
17962 AGGATGATAAGGCAATGC-AATAA--TCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* * * *
18024 AATTGGATTTAAGTTGATTTTCCAGGTTAAATATAGGTCGTTGGATGAAAAATAACAAGATTGTA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* * * * *
18089 ATTCTGGAAAATTACAAGGAAGAAACTAGTAATTATCAATTTGTTGGTTCATTTTTTAATTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
* * *
18154 ATGAACAAATTGACATGTGGAAAGTTATGAAGCATATGATTACAAGGGAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
*
18219 ATTAAAGTGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* **
18242 TTTAATAAAAAGATGACAAATGCTAGTGACCAAAATAAATAAATCAAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* *
18307 ATAAACTTAGGAAACA-TTTAGGGACCAAAATGCTATTTTCCCAAAAAATAAATTTTATCCTGTA
66 ATAAACTTAGGAAA-AGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* * * *
18371 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTGAGTTGGA-TTTTGATAGTTTTATTATTGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
*
18435 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTAA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* * * **
18500 AGGATGATAAGGCAGTACTAATAATGTTATTTCCACAATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* *
18565 TATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGAAAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* * *
18630 ATTTTGTAAAATTACATGGAAGAAAGTGGTAACTATCAATTTGCTGGTTCATTTTTTTACTTTTG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCA-TTTTTTACTTTTG
* * *
18695 GATGAACAAATTGAAATGTGGAAAGTTATTAAGCATGTAATTACAAGGCAAACATGATCATTTAG
454 GATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAG
18760 CATTAAAATGAATTTTTAATTCAT
519 CATTAAAATGAATTTTTAATTCAT
* * * *
18784 TTTAATAAAAAGATGACAAATTTTAGTGACCCAAATAAATATATTGAAAGTTTAGTGGCAAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
18849 ATAAACTTAGGAAATGTTTAAGGACCAAAATGCTATTTTCCC-AAAAAGAAATTTTATCTTTTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * * *
18913 TTGAATAGTTTGCCATCAAGAATTTTAAAGTCAGTTGGATTTTTCATACTTGTATTAGTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
*
18978 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAAATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
19043 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
*
19108 ATTGGATTTAAGTTGATTTTCCATGTTAAATATA-GTCGTTGGATGAAAAATGACAAGATTGTAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
* * * * *
19172 TTCTGGAAAATTACAAGGAAGAAACTGGTAATTATCAATTTGTTGGTTCGTTTTTTACTTTTGAA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
* * *
19237 TGAACAAATTGACATGTGGCAAGTTATGAAGCATGTGATTACAAGGGAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
* *
19302 TTAAAGTGAATTTTTATTTCAT
521 TTAAAATGAATTTTTAATTCAT
19324 TTTAATAAAAAGATGACAAAT-TTAAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATGTT-AGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
* * * *
19388 TATAAACTTAGGAAAAGTTTATGGACCAAAATGATATTTTCCCAAAAAATAAATTTTATCCTGTA
65 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* *
19453 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTGAGTTGGA-TTTTCATAGTTGTATTATTGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
19517 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* *
19582 TGGATGATAAGGCAATGCTAATAATGTTATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* *
19647 TATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGAAAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* *
19712 ATTTTGTAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGATCATTTTTTACTTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
* *
19777 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATATGATTACGAGGCAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
*
19842 AATAAAATGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* *
19865 TTTAATAAAAAGATGACAAAT-TTAAGTGACCCAAATAAATATATTGAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATGTT-AGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
* * *
19929 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTTCTAAAAAAGAAATTTTATCATGTA
65 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* * * *
19994 ATTGAATAGTTTACCACCCAGAGTTTTCAAGTCACTTGGATTTTTCATACTTGTATTAATGGGTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
20059 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* *
20124 AGGATGATAAGGCAATGCAAATAATATCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* * * *
20189 AATTGGATTTAAGTTGATTTTCCAGGTTAAATATAGGTCGTTGGATGAAAAATAACAAGATTGTA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* * * * *
20254 ATTCTGGAAAATTACAAGGAAGAAACTAGTAATTATCAATTTGTTGGTTCATTTTTTAATTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
* * *
20319 ATGAACAAATTGACATGTGGAAAGTTATGAAGCATATGATTACAAGGGAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
*
20384 ATTAAAGTGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* **
20407 TTTAATAAAAAGATGACAAATGCTAGTGACCAAAATAAATAAATCAAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* *
20472 ATAAACTTAGGAAACA-TTTAGGGACCAAAATGCTATTTTCCCAAAAAATAAATTTTATCCTGTA
66 ATAAACTTAGGAAA-AGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* * *
20536 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTGAGTTGGA-TTTTGATAGTTGTATTATTGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
*
20600 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTAA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* * * **
20665 AGGATGATAAGGCAGTACTAATAATGTTATTTCCACAATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* *
20730 TATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGAAAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* * *
20795 ATTTTGTAAAATTACATGGAAGAAAGTGGTAACTATCAATTTGCTGGTTCATTTTTTTACTTTTG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCA-TTTTTTACTTTTG
* *
20860 GATGAACAAATTGAAATGTGGAAAGTTATTAAGCATGTAATTACAAGGCAAACATGGTCATTTAG
454 GATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAG
20925 CATTAAAATGAATTTTTAATTCAT
519 CATTAAAATGAATTTTTAATTCAT
* * *
20949 TTTAATAAAAAGATGACAAATTTTAGTGACCCAAATAAATATATTGAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * * *
21014 ATAAACTTAGGAAATGTTTAAGGACCAAAATACTATTTTCCC-AAAAAGAAATTTTATCTTTTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * * *
21078 TTGAATAGTTTGCCATCAAGAATTTTAAAGTCAGTTGGATTTTTCATACTTGTATTAGTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
*
21143 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAAATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
21208 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
* *
21273 ATTGGATTTAAGTTTATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTGTAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
* * * * *
21338 TTCTGGAAAATTACAAGGAAGAAACTGGTAATTATCAATTTGTTGGTTCGTTTTTTACTTTTGAA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
* * *
21403 TGAACAAATTGACATGTGGCAAGTTATGAAGCATGTGATTACAAGGGAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
*
21468 TTAAAGTGAATTTTTAATTCAT
521 TTAAAATGAATTTTTAATTCAT
21490 TTTAATAAAAAGATGACAAAT-TTAAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATGTT-AGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
* *
21554 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAATAAATTTTATCCTGTA
65 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* *
21619 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTGAGTTGGA-TTTTCATAGTTGTATTATTGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
*
21683 TAAAGCTATAAAATTTAAGAAAAATTCTGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
*
21748 AGGATGATAAGGCAATGCTAATAATGTTATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* *
21813 TATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGAAAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* *
21878 ATTTTGTAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGATCATTTTTTACTTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
* *
21943 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATATGATTACGAGGCAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
*
22008 AATAAAATGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* * *
22031 TTTAATAAAAAGATGACAAAT-TTAAGTGACCCAAATAACTATATTGAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATGTT-AGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
* *
22095 TATAAACTTAGG-AAAGCTTTAAGGACCAAAATGCTATTTTCCC-TAAAAGAAATTTTATCTTGT
65 TATAAACTTAGGAAAAG-TTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGT
* * *
22158 AATTGAATAGTTTGCCACCAAGAATTTTCAAGTCAGTTGGATTTTTCATACTTGTATTAATGGCT
129 AATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCT
*
22223 ATAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAAATTTTTGAGATATTTTG
194 ATAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTG
22288 AAGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGA
259 AAGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGA
*
22353 CTATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTAT
324 CTATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTAT
* *
22418 AATTTTGGAAAATTACATGGAAGAAATTGATAACTATCAATTTGTTGGTTCATTTTTTACTTTTG
389 AATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTG
* *
22483 GATGAACAAATTGACATGTAGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCAGTTAG
454 GATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAG
22548 CATTAAAATGAATTTTTAATTCAT
519 CATTAAAATGAATTTTTAATTCAT
* *
22572 TTTAATAAAAAGATGACAAATGCTAGTGACCAAAATAAATAAATTTAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
*
22637 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCATGTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * *
22702 TTGAATAGTTTACCACCCAGAGTTTTCAAGTCACTTGGATTTTTCATACTTGTATTAATGGGTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
22767 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
* * *
22832 GGATGATAAGGCAATGCAAATAATATCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACA
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
* * *
22897 ATTGGATTTAAGTTGATTTTCCAGGTTAAATATAGGTCGTTGGATGAAAAATAACAAGATTGTAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
* * * * *
22962 TTCTGGAAAATTACAAGGAAGAAACTAGTAATTATCAATTTGTTGGTTCATTTTTTAATTTTGGA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
* *
23027 TGAACAAATTGACATGTGGAAAGTTATGAAGCATATGATTACAATGG-AAACATGGTCATTTAGC
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAA-GGCAAACATGGTCATTTAGC
*
23091 ATTAAAGTGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* **
23114 TTTAATAAAAAGATGACAAATGCTAGTGACCAAAATAAATAAATCAAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
23179 ATAAACTTAGGAAACA-TTTAGGGACCAAAATGCTATTTTCCCAAAAAATAAATTTTATCCTATA
66 ATAAACTTAGGAAA-AGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* * *
23243 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTGAGTTGGA-TTTTCATAGTTGTATTATTGACTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
23307 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* *
23372 AGGATGATAAGGAAATGCTAATAATGTTATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* *
23437 TATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGAAAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* *
23502 ATTTTGTAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGATCATTTTTTACTTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
* *
23567 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATATGATTACGAGGCAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
*
23632 AATAAAATGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* * *
23655 TTTAATAAAAAGATGACAAAT-TTAAGTGACCCAAATAACTATATTGAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATGTT-AGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
* *
23719 TATAAACTTAGG-AAAGCTTTAAGGACCAAAATGCTATTTTCCC-TAAAAGAAATTTTATCTTGT
65 TATAAACTTAGGAAAAG-TTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGT
* * *
23782 AATTGAATAGTTTGCCACCAAGAATTTTCAAGTCAGTTGGATTTTTCATACTTGTATTAATGGCT
129 AATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCT
*
23847 ATAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAAATTTTTGAGATATTTTG
194 ATAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTG
*
23912 AAGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAAAATTTAACATGGA
259 AAGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGA
* * *
23977 CAATTGGATTTAAGTTGATTTTCCAGGTTAAATATAGGTCGTTGGATGAAAAATAACAAGATTGA
324 CTATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATT-A
* * * * *
24042 -AATTCTGGAAAATTACAAGGAAGAAACTAGTAATTATCAATTTGTTGGTTCATTTTTTAATTTT
388 TAATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTT
* * *
24106 GGATGAACAAATTGACATGTGGAAAGTTATGAAGCATATGATTACAAGGGAAACATGGTCATTTA
453 GGATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTA
*
24171 GCATTAAAGTGAATTTTTAATTCAT
518 GCATTAAAATGAATTTTTAATTCAT
* **
24196 TTTAATAAAAAGATGACAAATGCTAGTGACCAAAATAAATAAATCAAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
24261 ATAAACTTAGGAAACA-TTTAGGGACCAAAATGCTATTTTCCCAAAAAATAAATTTTATCCTATA
66 ATAAACTTAGGAAA-AGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* *
24325 ATTGAATAGTTTACCACCAAGAG-TTTCAAGTGAGTTGGA-TTTTCATAGTTGTATTATTGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
*
24388 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTAA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* * * **
24453 AGGATGATAAGGGAGTGCTAATAATGTTATTTCCACAATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* * *
24518 TATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGAAAATATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* * * *
24583 ATTTTGTAAAATTACATGGAAGAAAGTGGTAACTATCAATTTGCTGGTTCATTTTTTTAATTTTG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCA-TTTTTTACTTTTG
* *
24648 GATGAACAAATTGAAATGTGGAAAGTTATTAAGCATGTAATTACAAGGCAAACATGGTCATTTAG
454 GATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAG
24713 CATTAAAATGAATTTTTAATTCAT
519 CATTAAAATGAATTTTTAATTCAT
* * *
24737 TTTAAT-AAAAGATGACAAATTTTAGTGACCCAAATAAATATATTGAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
24801 ATAAACTTAGGAAATGTTTAAGGACCAAAATGCTATTTTCCC-AAAAAGAAATTTTATCTTTTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * * *
24865 TTGAATAGTTTGCCATCAAGAATTTTAAAGTCAGTTGGATTTTTCATACTTGTATTAGTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
*
24930 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAAATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
24995 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
*
25060 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTGTAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
* * * * *
25125 TTCTGGAAAATTACAAGGAAGAAACTGGTAATTATCAATTTGTTGGTTCGTTTTTTACTTTTGAA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
* * *
25190 TGAACAAATTGACATGTGGCAAGTTATGAAGCATGTGATTACAAGGGAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
*
25255 TTAAAGTGAATTTTTAATTCAT
521 TTAAAATGAATTTTTAATTCAT
25277 TTTAATAAAAAGATGACAAAT-TTAAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATGTT-AGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
* * *
25341 TATAAACTTGGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAATAAATTTTATCCTGTA
65 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* *
25406 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTGAGTTGGA-TTTTCATAGTTGTATTATTGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
25470 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* *
25535 AGGATGATAAGGCAATGCTAATAATGTTATTTCCATGATTTTAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* * *
25600 TCTTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGAAAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* *
25665 ATTTTGTAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGATCATTTTTTACTTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
* *
25730 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATATGATTACGAGGCAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
*
25795 AATAAAATGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* *
25818 TTTAATAAAAAGATGACAAAT-TTAAGTGACCCAAATAAATATATTGAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATGTT-AGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
* *
25882 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAATAAATTTTATCATGT
65 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCC-AAAAAAGAAATTTTATCTTGT
* * * *
25947 AATTGAATAGTTTACCACCCAGAGTTTTCAAGTCACTTGGATTTTTCATACTTGTATTAATGGGT
129 AATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCT
26012 ATAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTG
194 ATAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTG
* *
26077 AAGGATGATAAGGCAATGCAAATAATATCATTTCCATGATTTAAAATGGTAGAATTTAACATGGA
259 AAGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGA
* * * *
26142 CAATTGGATTTAAGTTGATTTTCCAGGTTAAATATAGGTCGTTGGATGAAAAATAACAAGATTGT
324 CTATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTAT
* * * * *
26207 AATTCTGGAAAATTACAAGGAAGAAACTAGTAATTATCAATTTGTTGGTTCATTTTTTAATTTTG
389 AATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTG
* * *
26272 GATGAACAAATTGACATGTGGAAAGTTATGAAGCATATGATTACAAGGGAAACATGGTCATTTAG
454 GATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAG
*
26337 CATTAAAGTGAATTTTTAATTCAT
519 CATTAAAATGAATTTTTAATTCAT
* **
26361 TTTAATAAAAAGATGACAAATGCTAGTGACCAAAATAAATAAATCAAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* *
26426 ATAAACTTAGGAAACA-TTTAGGGACCAAAATGCTATTTTCCCAAAAAATAAATTTTATCCTGTA
66 ATAAACTTAGGAAA-AGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* *
26490 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTGAGTTGGA-TTTTCATAGTTGTATTATTGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
*
26554 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTAA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* * **
26619 AGGATGATAAGGCAGTGCTAATAATGTTATTTCCACAATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* * *
26684 TATTAGATTTAAGTTGATTTTCCAGGTTAAATATAGGTCGTTGGATGAAAAATGAAAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* * *
26749 ATTTTGTAAAATTACATGGAAGAAAGTGGTAACTATCAATTTGCTGGTTCATTTTTTTACTTTTG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCA-TTTTTTACTTTTG
* *
26814 GATGAACAAATTGAAATGTGGAAAGTTATTAAGCATGTAATTACAAGGCAAACATGGTCATTTAG
454 GATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAG
26879 CATTAAAATGAATTTTTAATTCAT
519 CATTAAAATGAATTTTTAATTCAT
* * *
26903 TTTAATAAAAAGATGACAAATTTTAGTGACCCAAATAAATATATTGAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
26968 ATAAACTTAGGAAATGTTTAAGGACCAAAATGCTATTTTCCC-AAAAAGAAATTTTATCTTTTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * * *
27032 TTGAATAGTTTGCCATCAAGAATTTTAAAGTCAGTTGGATTTTTCATACTTGTATTAGTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
*
27097 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAAATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
27162 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
* *
27227 ATTGGATTTAAGTTTATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTGTAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
* * * * *
27292 TTCTGGAAAATTACAAGGAAGAAACTGGTAATTATCAATTTGTTGGTTCGTTTTTTACTTTTGAA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
* * *
27357 TGAACAAATTGACATGTGGCAAGTTATGAAGCATGTGATTACAAGGGAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
*
27422 TTAAAGTGAATTTTTAATTCAT
521 TTAAAATGAATTTTTAATTCAT
27444 TTTAATAAAAAGATGACAAAT-TTAAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATGTT-AGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
* * * *
27508 TATAAACTTAGGAAAAGTTTATGGACCAAAATGATATTTTCCCAAAAAATAAATTTTATCCTGTA
65 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* *
27573 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTGAGTTGGA-TTTTCATAGTTGTATTA-TGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
27636 TAAAGCTAT-AAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* *
27700 TGGATGATAAGGCAATGCTAATAATGTTATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* *
27765 TATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGAAAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* *
27830 ATTTTGTAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGATCATTTTTTACTTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
* *
27895 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATATGATTACGAGGCAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
*
27960 AATAAAATGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* *
27983 TTTAATAAAAAGATGACAAAT-TTAAGTGACCCAAATAAATATATTGAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATGTT-AGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
* *
28047 TATAAACTTAGG-AAAGCTTTAAGGACCAAAATGCTATTTTCCC-TAAAAGAAATTTTATCTTGT
65 TATAAACTTAGGAAAAG-TTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGT
* * *
28110 AATTGAATAGTTTGCCACCAAGAATTTTCAAGTCAGTTGGATTTTTCATACTTGTATTAATGGCT
129 AATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCT
* *
28175 ATAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAAAATTTTGAGATA-TTTG
194 ATAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTG
* * * *
28239 AAGGATGATAAGGCATTGCTTATAATGTCATTTCCATAATTTAAAATGGTAAAATTTAACATGGA
259 AAGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGA
** * *
28304 AAATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCTTTGGATG-AAAATGACAAGATTGT
324 CTATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTAT
* * * * * *
28368 AATTCTGGAAAATTACAAGGAAGAAACAGGTAATTATCAATATGTTGGTTCATTTTTTAATTTTG
389 AATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTG
* ** *
28433 GATGAACAAATTGACATGTGGCAAGTTACGAAGCATGTGATTACAAGGGAAACATGGTCATTTAG
454 GATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAG
*
28498 CATTAAAATCAATTTTTAATTCAT
519 CATTAAAATGAATTTTTAATTCAT
** *
28522 TTTAATAAAAAGATGACAAATACTAGTGATCAAAATAAATAAATTGAAAGTTTAGTGG-CAATAG
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAA-AG
* * * *
28586 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGTTATTTTCCCAAAAAATAAATTTTATCCTATA
65 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* *
28651 ATTGAATAGTTTACCACCAAGAGTTTTCAAGCCAGTTGGA-TTTTCATACTTGTATTATTGTCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
* *
28715 TAAAGCTATAAAATTTAAGAAAAAATCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTAA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* * *
28780 AGGATGATAAGGCAGTGCTAATAATGTTATTTCCACGATTTAAAATGGTAGAATTTAACATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* *
28845 TATTAGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGAAAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
* *
28910 ATTTTGTAAAATTACATGGAAGAAACTGGTAACTATCAATATGTTGGTTCATTTTTTTACTTTTG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCA-TTTTTTACTTTTG
* * *
28975 GATGAACAAATTGAAATGTGGAAAGTTATTAAGCATGTAATTACAAGGCAAACATGGTCATTTAA
454 GATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAG
*
29040 CATTAAAATGAATTTTTAATTCAA
519 CATTAAAATGAATTTTTAATTCAT
* * *
29064 TTTAATAAAAAGATGACAAATTTTAGTGACCCAAATAAATATATTGAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
29129 ATAAACTTAGGAAATGTTTAAGGACCAAAATGCTATTTTCCC-AAAAAGAAATTTTATCTTTTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
** * * *
29193 TTGAATAGTTGGCCACCAAGAATTTTAAAGTCAGTTGGATTTTTCATACTTGTATTAGTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
* *
29258 AAAGCTATAAAATTTAAGAAAAAATCGGATAATCAAATCAAATCAAATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
29323 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
*
29388 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTGTAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
* * * * *
29453 TTCTGGAAAATTACAAGGAAGAAACTGGTAATTATCAATTTGTTGGTTCGTTTTTTACTTTTGAA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
* * *
29518 TGAACAAATTGACATGTGGCAAGTTATGAAGCATGTGATTACAAGGGAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
29583 TTAAAATGAATTTTTAATTCAT
521 TTAAAATGAATTTTTAATTCAT
* * *
29605 TTTAAGAAAAAGATGACAAATGCTT-GTGACCAAAATGAATAAATTAAAAGTTTAGTGGCCAAAG
1 TTTAATAAAAAGATGACAAATG-TTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAG
* * **
29669 TATAAAATGAGGAACTGTTTAGGGACCAAAATGCTATTTTCCC-AAAAAGAAATTTTATCTTGTA
65 TATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* * * *
29733 ACTGAATAGTTTACCACCAAGAGTTTTCAAGTCACTTAGA-TTTTCTATACTTGTATTAAT-GCA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTC-ATACTTGTATTATTGGC-
* *
29796 TATAAAGCTATAAAATTTAATAAAATTTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTT
193 TATAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTT
* *
29861 GAAGGATGATAAGGCAATGCTAATAATATAATTTCCATGATTTAAAATGGTAGAATTTAACATGG
258 GAAGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGG
*
29926 ACTATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTG
323 ACTATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTA
* * * *
29991 TAATTTTTGAAAATTACAAT-GAAGAAATTGCTAACTATTAATTTGTTGGTTCATTTTTTACTTT
388 TAATTTTGGAAAATTAC-ATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTT
* * *
30055 TGGATGAATAAATTTACATGTGGAAAGTTATTAAGCATGTGATTGA-AAGG--GA-A---TCA--
452 TGGATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATT-ACAAGGCAAACATGGTCATT
30111 T-G---------G----------TCAT
516 TAGCATTAAAATGAATTTTTAATTCAT
*
30118 TTTAATAAAAAGATGACAAATGCTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * * * *
30183 ATAAACTTAGGAAACGTTTAGTGACCAAAATGCTATTTTCTCAAAAAATAAATTTTATCCTGTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * * *
30248 TTGTATAGTTTACCACCAAAATTTTTCAAGTCAATTCGA-TTTTCATACTTGTATTATTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
*
30312 AAAGCTATAAAATTTAAGAAAAATTTGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
* *
30377 GGATGATAAGGCAACGCTAATAATGTTATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
**
30442 ATTATATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
30507 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
*
30572 TGAACAAATTGACATGTGGAAAGTTATTAAGCCTGTGATTACAAGGCAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
30637 TTAAAATGAATTTTTAATTCAT
521 TTAAAATGAATTTTTAATTCAT
* * * *
30659 TTTAATAAAAAGATGACAAATTTTAGTGACCCAAATAAATATATTGAAAGTTTAGTGGCTAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
30724 ATAAACTTAGGAAAAGTTGAAGGACCAAAATGCTATTTTCTC-AAAAAGAAATTTTATCTTGTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * *
30788 TTAAATAGTTTGCCACCAAGAATTTTCAAGTCAGTTGGATTTTTCATACTTGTATTAGTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
*
30853 AAAGCTATAAAAGTTAAGAAAAATTCGGATAATCAAATCAAATC--A------A-AT-TTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
*
30908 GGATGATAATGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
* * *
30973 ATTGGATTTAAGTTGATTTTCCATGTTAAGTATAGGTCGTTGGCTGAAAAATGACAAGATTGTAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
* * * * *
31038 TTCTGGAAAATTACAAGGAAGAAAATGGTAACTATCAATTTGTTGATTCATTTTTTACTTTTGAA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
* * * * *
31103 TGAAGAAATTGACATGTGGCAAGTTATGAAGCATGTGATTAAAAGGGAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
*
31168 TTAAAATGAATATTTAATTCAT
521 TTAAAATGAATTTTTAATTCAT
* * * *
31190 TTTAATGAAAAGATGACAAATTTTAGTGACCCAAATAAATATATTGAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
*
31255 ATAAACTTAGGAAAACGTTTAAGGACCAAAATGCTATTTTCCC-AAAAAGAAATTTTATCTTGTA
66 ATAAACTTAGGAAAA-GTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* * * * *
31319 ATAGAATAGTTTGCCACCAAGAATTTTCAAGCCAGTTGGATTTTTCATACTTGTATTAATGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
* *
31384 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATAAAATTTTTGAGATATTTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* *
31449 AGTATGATAA-GCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGTC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
*
31513 TATTGGATTTAAGTTGATTTTCCTTGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
*
31578 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATATTTTACTTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
* * *
31643 ATGAACAAATTGACATGTGGAAAGTTATGAAGAATGTGATTACAAGGCAAACATGGTAATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
* *
31708 ATTAAAATGATTTTTTAGTTCAT
520 ATTAAAATGAATTTTTAATTCAT
* * *
31731 TTTAATAAAAAGATGACAAATTTTAGTGACCCAAATAAATATATTGAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* *
31796 ATAAACTTAGGAAACGTTTTA-GGAACAAAATGCTATTTTCCC-AAAAAGAAATTTTATCTTGTA
66 ATAAACTTAGGAAAAG-TTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTA
* * * * ** *
31859 ATTGAATAGTTTGCCACCAAGAATTTTCATGTCAATTTTATTTTTCATACTTGTATTAGTGGCTA
130 ATTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
*
31924 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCCAATCAAATCAGATTTTTGAGATATTTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* *
31989 AGGATGATAAGGCAATGCTAATAATGTCGTTTCCATGATTTAAAATGGTAGAATTTAGCATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
32054 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATG-AAAATGACAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
*
32118 ATTTTTGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
*
32183 ATGAACAAATTGACATGTGGAAAGTTATGAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
32248 ATTAAAATGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* * * *
32271 TTTAATAAAAAGATGACAAATTTTAGTGACCCAAATAAATATATTGAAAGTTTAGTGTCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
32336 ATAAACTTAGGAAAAGTTTAAGGACCAAAATGATATTTTCCC-AAAAAGAAATTTTATCTTTTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * ** *
32400 TTGAATAGTTTGCCACCAAGAATTTTCAAGTCAATTGGAAATTTCATACTTGTATTAGTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
*
32465 AAAGCTATAAAATTTAATAAAAATTCGGATAATCAAAT----TCAGATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
*
32526 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTATAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
32591 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
32656 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTTACTTTTGG
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCA-TTTTTTACTTTTGG
*
32721 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGACAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
32786 ATTAAAATGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* * * *
32809 TTTAATAAAAAGATGACAAATTTTAGTGACCCAAATAAATATATTGAAAGTTTAGTGTCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
32874 ATAAACTTAGGAAAAGTTTAAGGACCAAAATGCCATTTTCCC-AAAAAGAAATTTTATCTTTTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * ** *
32938 TTGAATAGTTTGCCACCAAGAATTTTCAAGTCAATTGGAAATTTCATACTTGTATTAGTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
* *
33003 AAAGCTATAAAATTTAATAAAAATTCAGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
33068 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
*
33133 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGACGTTGGATGAAAAATGACAAGATTATAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
*
33198 TTTTGGAAAATTACATGGAAGAAAATGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
*
33263 TGAACAAATTGACATGTGGAAAGTTATGAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
33328 TTAAAATGAATTTTTAATTCAT
521 TTAAAATGAATTTTTAATTCAT
* * * *
33350 TTTAACAAAAAGATGACAAATTTTAGTGACCCAAATAAATATATTGAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * * *
33415 ATAAAC--AGGAAAAGTTTAAGGACCAAAATGATATTTTCTC-AAAAAGAAATTTTTTCTTGTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * ** * *
33477 TTGAATAGTTTGCCACCAAGAAG-TTTCATGTCAATTTTATTTTTCATACTTTTATTAGTGGCTA
131 TTGAATAGTTTACCACCAAG-AGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
33541 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* *
33606 AGGATGATAAGGCAATGCTAGTAATGTCATTTCCATGATTTAAAATGGTAGAATTTAGCATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* *
33671 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGCTCGTTGGATGAAAAATGAGAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
*
33736 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATAAATTTGTTGGTTCATTTTTTACTTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
33801 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
33866 ATTAAAATGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* * * *
33889 TTTAACAAAAAGATGACAAATTTTAGTGACCTAAATAAATATATTGAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
33954 ATAAACTTAGGAAAAGTTTAAGGACCAAAATGATATTTTCTC-AAAAAGAAATTTTATCTTGTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * ** * *
34018 TTGAATAGTTTGCCACCAAGAAG-TTTCATGTCAATTTTATTTTTCATACTTTTATTAGTGGCTA
131 TTGAATAGTTTACCACCAAG-AGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTA
34082 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
195 TAAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGA
* * *
34147 AGGATGATAAGGCAATACTAGTAATGTCATTTCCATGATTTAAAATGGTAGAATTTAGCATGGAC
260 AGGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGAC
* *
34212 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGCTCGTTGGATGAAAAATGAGAAGATTATA
325 TATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATA
34277 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
390 ATTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGG
*
34342 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGACAAACATGGTCATTTAGC
455 ATGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGC
34407 ATTAAAATGAATTTTTAATTCAT
520 ATTAAAATGAATTTTTAATTCAT
* * * *
34430 TTTAATAAAAAGATGACAAATTTTAGTGACCCAAATAAATATATTGAAAGTTTAGTGTCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* *
34495 ATAAACTTAGGAAAAGTTTAAGGACCAAAATGCTATTTTCTC-AAAAAGAAATTTTATCTTGTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
* * * *
34559 TTAAATAGTTTGCCACCAAGAATTTTCAAGTCAGTTGGATTTTTCATACTTGTATTAGTGGCTAT
131 TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
* *
34624 AAAGCTATAAAATTTAATAAAAATTCGG---AT--AATCAAATCAGATTTTTGAGATATTTTTAA
196 AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
34684 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
261 GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
* * * *
34749 ATTGGATTTAAGGTAATTTTCCATGTTAAATATATGTCGTTGGATGAAAAATGACAAGATTTTAA
326 ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
* * * * *
34814 TTCTGGAAAATTACAAGGAAGAAACTGGTAATTATCAATTTGTTGGTTCGTTTTTTACTTTTGAA
391 TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
* * *
34879 TGAACAAATTGACATGTGGCAAGTTATGAAGCATGTGATTACAAGGGAAACATGGTCATTTAGCA
456 TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
34944 TTAAAATGAATTTTTAATTCAT
521 TTAAAATGAATTTTTAATTCAT
* * * *
34966 TTTAAGAAAAAGATGACAAATGCTAGTGACCAAAATGAATAAATTAAAAGTTTAGTGGCCAAAGT
1 TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
* * *
35031 ATAAAATGAGGAAAAGTTTAGGGACCAAAATGCTATTTT-CCAAAAAAGAAATTTTATCCTGTAA
66 ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
*
35095 CTGAATAGTT
131 TTGAATAGTT
35105 GGCATGCCAT
Statistics
Matches: 21126, Mismatches: 1475, Indels: 366
0.92 0.06 0.02
Matches are distributed among these distances:
512 4 0.00
513 400 0.02
514 60 0.00
515 1 0.00
516 1 0.00
519 3 0.00
521 1 0.00
522 1 0.00
523 1 0.00
531 350 0.02
532 167 0.01
533 100 0.00
534 599 0.03
535 409 0.02
536 1201 0.06
537 640 0.03
538 1103 0.05
539 1819 0.09
540 2491 0.12
541 7481 0.35
542 3839 0.18
543 453 0.02
544 2 0.00
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.35
Consensus pattern (542 bp):
TTTAATAAAAAGATGACAAATGTTAGTGACCAAAATAAATAAATTGAAAGTTTAGTGGCCAAAGT
ATAAACTTAGGAAAAGTTTAGGGACCAAAATGCTATTTTCCCAAAAAAGAAATTTTATCTTGTAA
TTGAATAGTTTACCACCAAGAGTTTTCAAGTCAGTTGGATTTTTCATACTTGTATTATTGGCTAT
AAAGCTATAAAATTTAAGAAAAATTCGGATAATCAAATCAAATCAGATTTTTGAGATATTTTGAA
GGATGATAAGGCAATGCTAATAATGTCATTTCCATGATTTAAAATGGTAGAATTTAACATGGACT
ATTGGATTTAAGTTGATTTTCCATGTTAAATATAGGTCGTTGGATGAAAAATGACAAGATTATAA
TTTTGGAAAATTACATGGAAGAAACTGGTAACTATCAATTTGTTGGTTCATTTTTTACTTTTGGA
TGAACAAATTGACATGTGGAAAGTTATTAAGCATGTGATTACAAGGCAAACATGGTCATTTAGCA
TTAAAATGAATTTTTAATTCAT
Found at i:28308 original size:14 final size:15
Alignment explanation
Indices: 28276--28308 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
28266 TCATTTCCAT
28276 AATTTAAAATGGTAA
1 AATTTAAAATGGTAA
*
28291 AATTTAACATGG-AA
1 AATTTAAAATGGTAA
28305 AATT
1 AATT
28309 GGATTTAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.52, C:0.03, G:0.12, T:0.33
Consensus pattern (15 bp):
AATTTAAAATGGTAA
Found at i:35456 original size:48 final size:47
Alignment explanation
Indices: 35400--35515 Score: 128
Period size: 48 Copynumber: 2.4 Consensus size: 47
35390 GTAAACATGC
35400 AAATAAGCTTATGAGCTTACGGAA-T-AATGGCAAGTATATTGGAAAAAA
1 AAATAAGCTTATGAGCTTACGGAATTAAATGGCAAGTATATTGG---AAA
* * * * *
35448 AAATAAGCTTACGAGCTTATGGAATTTTAAATGGTAAGTATTTTGGTAA
1 AAATAAGCTTATGAGCTTACGGAA--TTAAATGGCAAGTATATTGGAAA
35497 AAATAAGCTTATGAGCTTA
1 AAATAAGCTTATGAGCTTA
35516 TGGGATAAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
48 22 0.38
49 20 0.34
51 1 0.02
52 15 0.26
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (47 bp):
AAATAAGCTTATGAGCTTACGGAATTAAATGGCAAGTATATTGGAAA
Found at i:35513 original size:49 final size:46
Alignment explanation
Indices: 35400--35523 Score: 133
Period size: 49 Copynumber: 2.6 Consensus size: 46
35390 GTAAACATGC
*
35400 AAATAAGCTTATGAGCTTACGGAATAATGGCAAGTATATTGGAAAAAA
1 AAATAAGCTTATGAGCTTATGGAATAATGGCAAGTATATTGG--AAAA
* * * *
35448 AAATAAGCTTACGAGCTTATGGAATTTTAAATGGTAAGTATTTTGG-TAA
1 AAATAAGCTTATGAGCTTATGGAA---T-AATGGCAAGTATATTGGAAAA
*
35497 AAATAAGCTTATGAGCTTATGGGATAA
1 AAATAAGCTTATGAGCTTATGGAATAA
35524 AAGGTAAGAA
Statistics
Matches: 65, Mismatches: 7, Indels: 11
0.78 0.08 0.13
Matches are distributed among these distances:
45 2 0.03
46 1 0.02
48 22 0.34
49 24 0.37
51 1 0.02
52 15 0.23
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (46 bp):
AAATAAGCTTATGAGCTTATGGAATAATGGCAAGTATATTGGAAAA
Found at i:42740 original size:32 final size:31
Alignment explanation
Indices: 42704--42780 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 31
42694 CGGGGCCACG
* *
42704 GGGCCTACCTAAGAATACATCTTAGGGCCGTA
1 GGGCCTACCTAAGAAT-CATCTCAGGGCCGCA
** *
42736 GGGCCTACCCGAGAATGATCTCAGGGCCGCA
1 GGGCCTACCTAAGAATCATCTCAGGGCCGCA
**
42767 AAGCCTACCTAAGA
1 GGGCCTACCTAAGA
42781 GTCACATTAG
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
31 22 0.61
32 14 0.39
ACGTcount: A:0.29, C:0.29, G:0.26, T:0.17
Consensus pattern (31 bp):
GGGCCTACCTAAGAATCATCTCAGGGCCGCA
Found at i:48337 original size:110 final size:110
Alignment explanation
Indices: 48223--48427 Score: 248
Period size: 110 Copynumber: 1.9 Consensus size: 110
48213 CTTAAACAAG
* ** * *
48223 GGGACTAAACAATAAATATTTTAATAAACACATAACATACAAGAAAAAAAGGTAAATAACAATTT
1 GGGACTAAACAACAAATAACTCAATAAACACATAACACACAAGAAAAAAAGGTAAATAACAATTT
* *
48288 CGGTCCTCTCAGGTGACCAAAATGCAAAAAAATGTTGAACGTAGA
66 CGGTCCTCACAAGTGACCAAAATGCAAAAAAATGTTGAACGTAGA
* * * * ** * * *
48333 GGGACTAAACAACAATTAACTCAATCAATATATAACACGTATGAAAAAAGGGTAAATACCAATTT
1 GGGACTAAACAACAAATAACTCAATAAACACATAACACACAAGAAAAAAAGGTAAATAACAATTT
**
48398 TTGTCCTCACAAGTGACCAAAATGCAAAAA
66 CGGTCCTCACAAGTGACCAAAATGCAAAAA
48428 GGTGCAAACC
Statistics
Matches: 77, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
110 77 1.00
ACGTcount: A:0.48, C:0.16, G:0.14, T:0.22
Consensus pattern (110 bp):
GGGACTAAACAACAAATAACTCAATAAACACATAACACACAAGAAAAAAAGGTAAATAACAATTT
CGGTCCTCACAAGTGACCAAAATGCAAAAAAATGTTGAACGTAGA
Found at i:49476 original size:18 final size:18
Alignment explanation
Indices: 49443--49495 Score: 79
Period size: 19 Copynumber: 2.8 Consensus size: 18
49433 ATAAATAAAA
*
49443 ATAAATTAAATCAAAATAG
1 ATAAATAAAAT-AAAATAG
49462 ATAAATAAAATAAAATAG
1 ATAAATAAAATAAAATAG
49480 ATAAATAAAAATAAAA
1 ATAAAT-AAAATAAAA
49496 GAACCGGGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 13 0.41
19 19 0.59
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.23
Consensus pattern (18 bp):
ATAAATAAAATAAAATAG
Found at i:51713 original size:16 final size:16
Alignment explanation
Indices: 51692--51722 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51682 TTAAAATAAT
*
51692 AACAGTAACATCTAGA
1 AACAGTAACAACTAGA
51708 AACAGTAACAACTAG
1 AACAGTAACAACTAG
51723 GATGTCATCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.19, G:0.13, T:0.16
Consensus pattern (16 bp):
AACAGTAACAACTAGA
Found at i:57987 original size:32 final size:32
Alignment explanation
Indices: 57937--57998 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
57927 TGAGTCACAA
*
57937 CAGAGTCAGTATTCCATTCAGATAATGCATGG
1 CAGAGTCAGTATTCCATTCAAATAATGCATGG
* * *
57969 CAGAGTTAGTGTTGCATTCAAATAATGCAT
1 CAGAGTCAGTATTCCATTCAAATAATGCAT
57999 AGGAACGTCG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (32 bp):
CAGAGTCAGTATTCCATTCAAATAATGCATGG
Found at i:64741 original size:20 final size:20
Alignment explanation
Indices: 64671--64741 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
64661 TAATAAATTT
*
64671 AAATAAAATAAAATAACAAA
1 AAATAAAATAAAATAATAAA
*
64691 TAATAAAATAAAA-ACAGT-AA
1 AAATAAAATAAAATA-A-TAAA
* * *
64711 CAACAACATAAAATAATAAA
1 AAATAAAATAAAATAATAAA
64731 AAATAAAATAA
1 AAATAAAATAA
64742 GTACAATGAC
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
19 2 0.05
20 36 0.92
21 1 0.03
ACGTcount: A:0.75, C:0.07, G:0.01, T:0.17
Consensus pattern (20 bp):
AAATAAAATAAAATAATAAA
Found at i:67265 original size:20 final size:20
Alignment explanation
Indices: 67228--67265 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67218 CGTTGAGGCA
**
67228 GTATCAATACCATTATAAGG
1 GTATCAATACCAAGATAAGG
67248 GTATCAATACCAAGATAA
1 GTATCAATACCAAGATAA
67266 TTTTGGTATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.16, G:0.13, T:0.26
Consensus pattern (20 bp):
GTATCAATACCAAGATAAGG
Found at i:67349 original size:14 final size:14
Alignment explanation
Indices: 67330--67356 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
67320 CCATGGTAAG
67330 GGTATCGATACCAT
1 GGTATCGATACCAT
67344 GGTATCGATACCA
1 GGTATCGATACCA
67357 GGCAACATCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (14 bp):
GGTATCGATACCAT
Found at i:67421 original size:22 final size:22
Alignment explanation
Indices: 67395--67451 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
67385 ATACCCAGAG
*
67395 GAAGTATCGATACAATAGTATT
1 GAAGTATCGATACAATAATATT
67417 GAAGTATCGATACAATAATATT
1 GAAGTATCGATACAATAATATT
67439 GAAGTATCGATAC
1 GAAGTATCGATAC
67452 CTGGGTAGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.30
Consensus pattern (22 bp):
GAAGTATCGATACAATAATATT
Found at i:67956 original size:45 final size:44
Alignment explanation
Indices: 67887--68183 Score: 186
Period size: 45 Copynumber: 7.3 Consensus size: 44
67877 TAAAAGAATA
* * *
67887 ATGCATATGGGTGCATTATTGGCATGAAGGGATGCCATAGTTGAT
1 ATGCATATGGGTGCAGTATCGGCATGAA-GGATGCCATAGCTGAT
*
67932 ATGCATATGGGTGCAGTATCGGCAT-AA--AAG--A-A--T-A-
1 ATGCATATGGGTGCAGTATCGGCATGAAGGATGCCATAGCTGAT
* * *
67966 ATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCCGAT
1 ATGCATATGGGTGCAGTATCGGCATG-AAGGATGCCATAGCTGAT
* *
68011 ATGCATATGGGTGCAGTATCGACAT-AA--A----ATA-AT-A-
1 ATGCATATGGGTGCAGTATCGGCATGAAGGATGCCATAGCTGAT
* *
68045 ATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAT
1 ATGCATATGGGTGCAGTATCGGCATG-AAGGATGCCATAGCTGAT
* *
68090 ATGCATATGGGTGTAGTATCGGCAT-AA--AAG--A-A--T-A-
1 ATGCATATGGGTGCAGTATCGGCATGAAGGATGCCATAGCTGAT
* * ** *
68124 ATGCATATGGGTGCATTATTGGCATGAAAATATGCCATAGCTGAA
1 ATGCATATGGGTGCAGTATCGGCATG-AAGGATGCCATAGCTGAT
68169 ATGCATATGGGTGCA
1 ATGCATATGGGTGCA
68184 TTACTGGCAT
Statistics
Matches: 195, Mismatches: 24, Indels: 66
0.68 0.08 0.23
Matches are distributed among these distances:
34 67 0.34
35 3 0.02
36 8 0.04
37 3 0.02
38 7 0.04
39 2 0.01
40 2 0.01
41 7 0.04
42 3 0.02
43 6 0.03
44 5 0.03
45 82 0.42
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (44 bp):
ATGCATATGGGTGCAGTATCGGCATGAAGGATGCCATAGCTGAT
Found at i:67970 original size:34 final size:35
Alignment explanation
Indices: 67932--68153 Score: 153
Period size: 34 Copynumber: 5.9 Consensus size: 35
67922 CATAGTTGAT
67932 ATGCATATGGGTGCAGTATCGGCAT-AAAAGAATA
1 ATGCATATGGGTGCAGTATCGGCATGAAAAGAATA
* * *
67966 ATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCCGA
1 ATGCATATGGGTGCAGTATCGGCATGAAA--A-G--A-A---TA
* *
68010 TATGCATATGGGTGCAGTATCGACAT-AAAATAATA
1 -ATGCATATGGGTGCAGTATCGGCATGAAAAGAATA
* *
68045 ATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGA
1 ATGCATATGGGTGCAGTATCGGCATGAAA--A-G--A-A--T-A
*
68089 TATGCATATGGGTGTAGTATCGGCAT-AAAAGAATA
1 -ATGCATATGGGTGCAGTATCGGCATGAAAAGAATA
* *
68124 ATGCATATGGGTGCATTATTGGCATGAAAA
1 ATGCATATGGGTGCAGTATCGGCATGAAAA
68154 TATGCCATAG
Statistics
Matches: 147, Mismatches: 18, Indels: 45
0.70 0.09 0.21
Matches are distributed among these distances:
34 67 0.46
35 12 0.08
36 1 0.01
37 2 0.01
38 3 0.02
39 2 0.01
40 2 0.01
41 3 0.02
42 2 0.01
43 1 0.01
44 8 0.05
45 44 0.30
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.27
Consensus pattern (35 bp):
ATGCATATGGGTGCAGTATCGGCATGAAAAGAATA
Found at i:68012 original size:79 final size:79
Alignment explanation
Indices: 67876--68196 Score: 536
Period size: 79 Copynumber: 4.1 Consensus size: 79
67866 AAACAAATTA
* *
67876 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAGGGATGCCATAGTTGATATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGATATGCATATG
67941 GGTGCAGTATCGGC
66 GGTGCAGTATCGGC
*
67955 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCCGATATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGATATGCATATG
*
68020 GGTGCAGTATCGAC
66 GGTGCAGTATCGGC
*
68034 ATAAAATAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGATATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGATATGCATATG
*
68099 GGTGTAGTATCGGC
66 GGTGCAGTATCGGC
** *
68113 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAATATGCCATAGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGATATGCATATG
*
68178 GGTGCATTA-CTGGC
66 GGTGCAGTATC-GGC
68192 ATAAA
1 ATAAA
68197 TATATAAGAC
Statistics
Matches: 227, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
78 1 0.00
79 226 1.00
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.27
Consensus pattern (79 bp):
ATAAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGATATGCATATG
GGTGCAGTATCGGC
Found at i:73507 original size:13 final size:13
Alignment explanation
Indices: 73489--73546 Score: 50
Period size: 13 Copynumber: 4.7 Consensus size: 13
73479 CTACCTATAA
73489 CATCACCATCTTT
1 CATCACCATCTTT
73502 CATCACCAT-TTT
1 CATCACCATCTTT
* * **
73514 CA-CGCC-TATAA
1 CATCACCATCTTT
*
73525 CATCACCATCTTC
1 CATCACCATCTTT
73538 CATCACCAT
1 CATCACCAT
73547 TGCACGCCCA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
10 1 0.03
11 6 0.17
12 8 0.23
13 20 0.57
ACGTcount: A:0.28, C:0.40, G:0.02, T:0.31
Consensus pattern (13 bp):
CATCACCATCTTT
Found at i:76032 original size:35 final size:35
Alignment explanation
Indices: 75949--76061 Score: 127
Period size: 35 Copynumber: 3.2 Consensus size: 35
75939 TAAGAAACTA
* * *
75949 CCTATAACATCACCATCTTTCATCACCATTTTCACG
1 CCTATATCATCATCATCTTCCATCACCA-TTTCACG
* *
75985 CCTATAACATCATCATCTTCCATCACCATTGCACG
1 CCTATATCATCATCATCTTCCATCACCATTTCACG
* * * * *
76020 CCCATATTATCATCAACTTCTATCACTATTTCACG
1 CCTATATCATCATCATCTTCCATCACCATTTCACG
76055 CCTATAT
1 CCTATAT
76062 AACCACCAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
35 40 0.61
36 26 0.39
ACGTcount: A:0.28, C:0.35, G:0.04, T:0.34
Consensus pattern (35 bp):
CCTATATCATCATCATCTTCCATCACCATTTCACG
Found at i:76784 original size:26 final size:26
Alignment explanation
Indices: 76749--76815 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
76739 ATCCATTTCT
*
76749 TAACCTTTTCTATCCTACCCCTATCA
1 TAACCATTTCTATCCTACCCCTATCA
*
76775 TAACCATTTCTATCTTACCCCTATCA
1 TAACCATTTCTATCCTACCCCTATCA
76801 TAACCATTTCTATCC
1 TAACCATTTCTATCC
76816 CTAACCATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.25, C:0.36, G:0.00, T:0.39
Consensus pattern (26 bp):
TAACCATTTCTATCCTACCCCTATCA
Found at i:81395 original size:22 final size:22
Alignment explanation
Indices: 81367--81418 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
81357 ATAATAGAGA
81367 ATTTCATGTAAAACAATTTTCT
1 ATTTCATGTAAAACAATTTTCT
*
81389 ATTTCATGTAGAACAATTTTCT
1 ATTTCATGTAAAACAATTTTCT
81411 ATTTCATG
1 ATTTCATG
81419 CTTTCATCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (22 bp):
ATTTCATGTAAAACAATTTTCT
Found at i:84138 original size:11 final size:11
Alignment explanation
Indices: 84114--84149 Score: 54
Period size: 11 Copynumber: 3.1 Consensus size: 11
84104 CTATTATTTC
84114 AAAATTATATAAA
1 AAAATT-TA-AAA
84127 AAAATTTAAAA
1 AAAATTTAAAA
84138 AAAATTTAAAA
1 AAAATTTAAAA
84149 A
1 A
84150 TATCTGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 15 0.65
12 2 0.09
13 6 0.26
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
AAAATTTAAAA
Found at i:85782 original size:3 final size:3
Alignment explanation
Indices: 85774--85854 Score: 135
Period size: 3 Copynumber: 27.0 Consensus size: 3
85764 TTAATATATT
*
85774 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
85822 TAA AAA TAA TAA TAA TAA AAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
85855 ATCAATATGG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:86322 original size:113 final size:113
Alignment explanation
Indices: 86182--86956 Score: 1383
Period size: 113 Copynumber: 6.9 Consensus size: 113
86172 AGAATTATGC
* * * *
86182 AAAAAGTTGAACAAGTTCTTCTTATTATGAACCTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
86247 TATGAACTTTCTCTGGAAAAGTTAATCCATCAATTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
* *
86295 AAAAGTTTGAACAAATTCTTCTCATTATGAACTTCTTATTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
86360 TATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
86408 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
86473 AATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
66 TATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
86521 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
86586 TATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAAGT
66 TATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
*
86634 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTT-TCTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCT-TCTTCCTTCTTCAGATGAGTTCTTCTCA
86698 TTATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
65 TTATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
*
86747 AAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
86812 TATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAAGT
66 TATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
*
86860 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTT-TCTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCT-TCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
86924 TTATGAACTTTCTCTGGAAAAGCTGATCCATCA
65 TTATGAACTTTCTCTGGAAAAGATAATCCATCA
86957 TTATGGATTC
Statistics
Matches: 638, Mismatches: 21, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
112 2 0.00
113 635 1.00
114 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (113 bp):
AAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTTTCTCTGGAAAAGATAATCCATCAATTGATGAATTCAGGT
Found at i:87949 original size:82 final size:83
Alignment explanation
Indices: 87681--88151 Score: 808
Period size: 83 Copynumber: 5.7 Consensus size: 83
87671 CTGTAGTTCC
87681 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTT-T
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
*
87745 CAAATTCAATGATTAGTTT
66 -AAATTCAATGATTGGTTT
87764 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
87829 AAATTCAATGATTGGTTT
66 AAATTCAATGATTGGTTT
* * *
87847 TACCAAACCAGATCATATAACTCAAAGAACACTTCCAGAAGATGCTATG-GTAAATTCATCTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
87911 AAATTCAATGATTGGTTT
66 AAATTCAATGATTGGTTT
87929 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
87994 AAATTCAATGATTGGTTT
66 AAATTCAATGATTGGTTT
* * *
88012 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATG-GTAAATTCATCTTCT
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
88076 AAATTCAATGATTGGTTCT
66 AAATTCAATGATTGGTT-T
88095 GT-CC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGAGCACATT
1 -TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCACATT
88152 ACATTTGTTC
Statistics
Matches: 369, Mismatches: 13, Indels: 11
0.94 0.03 0.03
Matches are distributed among these distances:
82 150 0.41
83 212 0.57
84 7 0.02
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (83 bp):
TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCT
AAATTCAATGATTGGTTT
Found at i:87954 original size:165 final size:165
Alignment explanation
Indices: 87681--88151 Score: 831
Period size: 165 Copynumber: 2.8 Consensus size: 165
87671 CTGTAGTTCC
* *
87681 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTT-T
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG-GTAAATTCATCTTCT
*
87745 CAAATTCAATGATTAGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCT
65 -AAATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCT
87810 ATGAGCACATTCATCTTCTAAATTCAATGATTGGTTT
129 ATGAGCACATTCATCTTCTAAATTCAATGATTGGTTT
*
87847 TACCAAACCAGATCATATAACTCAAAGAACACTTCCAGAAGATGCTATGGTAAATTCATCTTCTA
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGGTAAATTCATCTTCTA
87912 AATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
66 AATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
87977 GAGCACATTCATCTTCTAAATTCAATGATTGGTTT
131 GAGCACATTCATCTTCTAAATTCAATGATTGGTTT
*
88012 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGTTATGGTAAATTCATCTTCTA
1 TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGGTAAATTCATCTTCTA
88077 AATTCAATGATTGGTTCTGT-CC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCT
66 AATTCAATGATTGGTT-T-TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCT
88140 ATTGAGCACATT
129 A-TGAGCACATT
88152 ACATTTGTTC
Statistics
Matches: 295, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
165 232 0.79
166 62 0.21
167 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (165 bp):
TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGGTAAATTCATCTTCTA
AATTCAATGATTGGTTTTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
GAGCACATTCATCTTCTAAATTCAATGATTGGTTT
Found at i:89309 original size:9 final size:9
Alignment explanation
Indices: 89297--89367 Score: 79
Period size: 9 Copynumber: 7.3 Consensus size: 9
89287 CTTGACCCCC
89297 TTTTTTCTT
1 TTTTTTCTT
89306 TTTTTTCTT
1 TTTTTTCTT
*
89315 TTTTCTCTTT
1 TTTTTTC-TT
89325 TTTTTTCTT
1 TTTTTTCTT
*
89334 TTCTTTCTTT
1 TTTTTTC-TT
89344 TTCTTTTCTCT
1 TT-TTTTCT-T
89355 CTTTTTTCTT
1 -TTTTTTCTT
89365 TTT
1 TTT
89368 CTTCAAGCAT
Statistics
Matches: 53, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
9 26 0.49
10 14 0.26
11 11 0.21
12 2 0.04
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:89325 original size:15 final size:17
Alignment explanation
Indices: 89296--89371 Score: 81
Period size: 16 Copynumber: 4.6 Consensus size: 17
89286 CCTTGACCCC
89296 CTTTTTTCTT-TTTTTT
1 CTTTTTTCTTCTTTTTT
89312 CTTTTTTC-TCTTTTTT
1 CTTTTTTCTTCTTTTTT
*
89328 TTTCTTTTCTT-TCTTTTT
1 CTT-TTTTCTTCT-TTTTT
*
89346 CTTTTCTC-TCTTTTTT
1 CTTTTTTCTTCTTTTTT
89362 C-TTTTTCTTC
1 CTTTTTTCTTC
89372 AAGCATAATA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
15 6 0.12
16 25 0.50
17 11 0.22
18 8 0.16
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (17 bp):
CTTTTTTCTTCTTTTTT
Found at i:96721 original size:15 final size:15
Alignment explanation
Indices: 96701--96732 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
96691 TGAATGATGA
*
96701 ATGTATGCAAAATGT
1 ATGTATGCAAAAGGT
96716 ATGTATGCAAAAGGT
1 ATGTATGCAAAAGGT
96731 AT
1 AT
96733 TGATCCCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (15 bp):
ATGTATGCAAAAGGT
Found at i:103996 original size:3 final size:3
Alignment explanation
Indices: 103988--104062 Score: 114
Period size: 3 Copynumber: 25.0 Consensus size: 3
103978 TTAATATATT
* *
103988 TAA TAA TAA TAA TAA TAA TGA TGA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
104036 AAA TAA TAA TAA AAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
104063 ATCAATATGG
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:111138 original size:22 final size:21
Alignment explanation
Indices: 111113--111159 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
111103 CTGTAATTTT
*
111113 AGTTCGCCCTCCCCTAAGTTTA
1 AGTTCGCCAT-CCCTAAGTTTA
* *
111135 AGTTTGTCATCCCTAAGTTTA
1 AGTTCGCCATCCCTAAGTTTA
111156 AGTT
1 AGTT
111160 TGTTATCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (21 bp):
AGTTCGCCATCCCTAAGTTTA
Found at i:111148 original size:21 final size:21
Alignment explanation
Indices: 111124--111171 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
111114 GTTCGCCCTC
111124 CCCTAAGTTTAAGTTTGTCAT
1 CCCTAAGTTTAAGTTTGTCAT
*
111145 CCCTAAGTTTAAGTTTGTTAT
1 CCCTAAGTTTAAGTTTGTCAT
111166 CCCTAA
1 CCCTAA
111172 CATAAAATCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.12, T:0.42
Consensus pattern (21 bp):
CCCTAAGTTTAAGTTTGTCAT
Found at i:111367 original size:13 final size:13
Alignment explanation
Indices: 111340--111382 Score: 68
Period size: 13 Copynumber: 3.2 Consensus size: 13
111330 CACTTTTTTC
111340 CTTCTCTTCTCCTT
1 CTTC-CTTCTCCTT
*
111354 CTTCCTTCTTCTT
1 CTTCCTTCTCCTT
111367 CTTCCTTCTCCTT
1 CTTCCTTCTCCTT
111380 CTT
1 CTT
111383 TCATAACCCG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 23 0.85
14 4 0.15
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (13 bp):
CTTCCTTCTCCTT
Found at i:111437 original size:46 final size:47
Alignment explanation
Indices: 111371--111459 Score: 162
Period size: 46 Copynumber: 1.9 Consensus size: 47
111361 CTTCTTCTTC
111371 CTTCTCCTTCTTTCATAACCCGT-AAAGAAGATGATGGACAATTGAT
1 CTTCTCCTTCTTTCATAACCCGTAAAAGAAGATGATGGACAATTGAT
*
111417 CTTCTTCTTCTTTCATAACCCGTAAAAGAAGATGATGGACAAT
1 CTTCTCCTTCTTTCATAACCCGTAAAAGAAGATGATGGACAAT
111460 CGATTAACTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
46 22 0.54
47 19 0.46
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (47 bp):
CTTCTCCTTCTTTCATAACCCGTAAAAGAAGATGATGGACAATTGAT
Found at i:111921 original size:21 final size:21
Alignment explanation
Indices: 111870--111922 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
111860 ATTATGACTA
111870 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
111891 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
111912 TCGCAATGCGA
1 TCGCAATGCGA
111923 ATAAGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:111937 original size:20 final size:21
Alignment explanation
Indices: 111912--111963 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
111902 TTTTCCCAAT
*
111912 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
111932 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
111953 TCGCAATGCGA
1 TCGCAATGCGA
111964 TACTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:111942 original size:41 final size:41
Alignment explanation
Indices: 111897--112128 Score: 132
Period size: 41 Copynumber: 5.7 Consensus size: 41
111887 AATTTCGCGT
*
111897 TGCGATTTTCCCAATTCGCAATGCGAATAAGTAAATCGCAA
1 TGCGATTTTCCTAATTCGCAATGCGAATAAGTAAATCGCAA
* *** * * *
111938 TGCGAATTTGGAAAATCGCAATGCG-AT-ACTGACTATCGCAA
1 TGCGATTTTCCTAATTCGCAATGCGAATAAGT-A-AATCGCAA
** * * * * **
111979 TGTAATTTTCCTAATTCGCATTGCGATTTACGT-ATTCGCGT
1 TGCGATTTTCCTAATTCGCAATGCGA-ATAAGTAAATCGCAA
* *
112020 TGCGATTTTCATAATTCGCAATGCGAATACGTAAATCGCAA
1 TGCGATTTTCCTAATTCGCAATGCGAATAAGTAAATCGCAA
* *** * * *
112061 CGCGA-TTAAGTAAATCGCAATGCGAATTAGGAAAATCGCAA
1 TGCGATTTTCCTAATTCGCAATGCGAA-TAAGTAAATCGCAA
* * * *
112102 TGCGA-ATACGTAAATCGCAATGCGAAT
1 TGCGATTTTCCTAATTCGCAATGCGAAT
112129 CTTACTATCG
Statistics
Matches: 144, Mismatches: 40, Indels: 15
0.72 0.20 0.08
Matches are distributed among these distances:
39 2 0.01
40 26 0.18
41 114 0.79
43 1 0.01
44 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.28
Consensus pattern (41 bp):
TGCGATTTTCCTAATTCGCAATGCGAATAAGTAAATCGCAA
Found at i:112007 original size:21 final size:21
Alignment explanation
Indices: 111983--112045 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 21
111973 TCGCAATGTA
*
111983 ATTTTCCTAATTCGCATTGCG
1 ATTTTCATAATTCGCATTGCG
* * *
112004 ATTTACGT-ATTCGCGTTGCG
1 ATTTTCATAATTCGCATTGCG
*
112024 ATTTTCATAATTCGCAATGCG
1 ATTTTCATAATTCGCATTGCG
112045 A
1 A
112046 ATACGTAAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
20 17 0.50
21 17 0.50
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (21 bp):
ATTTTCATAATTCGCATTGCG
Found at i:112060 original size:20 final size:20
Alignment explanation
Indices: 112035--112146 Score: 136
Period size: 20 Copynumber: 5.5 Consensus size: 20
112025 TTTTCATAAT
112035 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* * *
112055 TCGCAACGCGATTAAGTAAA
1 TCGCAATGCGAATACGTAAA
* *
112075 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
112096 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
112116 TCGCAATGCGAAT-CTTACTA
1 TCGCAATGCGAATACGTA-AA
112136 TCGCAATGCGA
1 TCGCAATGCGA
112147 TTTACATAGC
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
19 3 0.04
20 58 0.73
21 18 0.23
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:112730 original size:33 final size:33
Alignment explanation
Indices: 112671--112764 Score: 129
Period size: 33 Copynumber: 2.8 Consensus size: 33
112661 CGAGAATGAA
112671 AATCGCAACGCGGAAAT--AACTATCGCAACGAGAG
1 AATCGCAACGC-GAAATGAAAC--TCGCAACGAGAG
*
112705 AATCGCAACGCGAAATGAAACTCGCAACGAGAT
1 AATCGCAACGCGAAATGAAACTCGCAACGAGAG
*
112738 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAACTCGCAA
112765 TCGAAACCAA
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
33 42 0.75
34 11 0.20
35 3 0.05
ACGTcount: A:0.44, C:0.23, G:0.21, T:0.12
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAACTCGCAACGAGAG
Found at i:112731 original size:19 final size:18
Alignment explanation
Indices: 112705--112764 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 18
112695 GCAACGAGAG
112705 AATCGCAACGCGAAATGA
1 AATCGCAACGCGAAATGA
*
112723 AACTCGCAA--CGAGAT--
1 AA-TCGCAACGCGAAATGA
112738 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATG-A
112757 AATCGCAA
1 AATCGCAA
112765 TCGAAACCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 11
0.72 0.04 0.23
Matches are distributed among these distances:
14 6 0.18
15 2 0.06
16 5 0.15
17 5 0.15
18 2 0.06
19 14 0.41
ACGTcount: A:0.45, C:0.23, G:0.20, T:0.12
Consensus pattern (18 bp):
AATCGCAACGCGAAATGA
Found at i:112828 original size:33 final size:33
Alignment explanation
Indices: 112782--112875 Score: 152
Period size: 33 Copynumber: 2.8 Consensus size: 33
112772 CAAAATCGCA
**
112782 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
112815 TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
*
112848 TTACGATAGTCATTTCCGCGTTGCGATT
1 TTGCGATAGTCATTT-CGCGTTGCGATT
112876 TTCATTATCT
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 45 0.79
34 12 0.21
ACGTcount: A:0.13, C:0.23, G:0.22, T:0.41
Consensus pattern (33 bp):
TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
Found at i:112880 original size:20 final size:20
Alignment explanation
Indices: 112857--112903 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
112847 GTTACGATAG
112857 TCATTTCCGCGTTGCGATTT
1 TCATTTCCGCGTTGCGATTT
*
112877 TCATTAT-CTCGTTGCGATTT
1 TCATT-TCCGCGTTGCGATTT
112897 TCATTTC
1 TCATTTC
112904 AACCAAAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 1 0.04
20 22 0.92
21 1 0.04
ACGTcount: A:0.13, C:0.23, G:0.15, T:0.49
Consensus pattern (20 bp):
TCATTTCCGCGTTGCGATTT
Found at i:115059 original size:42 final size:42
Alignment explanation
Indices: 114999--115121 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
114989 GCCCGACTCG
* * *
114999 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
115041 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
115083 ACTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCCTCAAGA-GTCCACTCCCACCGTTCAAGAG
115122 CCCGATTCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 62 0.94
43 4 0.06
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:115079 original size:21 final size:21
Alignment explanation
Indices: 115055--115121 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
115045 TCATTCCTCG
115055 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
115076 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
115097 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
115118 AGAG
1 AGAG
115122 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:117963 original size:24 final size:24
Alignment explanation
Indices: 117929--117982 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
117919 CTGAAAAATC
*
117929 ATCAAAATCCGAGTATTGACCAAT
1 ATCAAAATCCGAGTATTGACCAAG
* *
117953 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
117977 ATCAAA
1 ATCAAA
117983 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:118780 original size:20 final size:21
Alignment explanation
Indices: 118755--118806 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
118745 TTTTCCCAAT
*
118755 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
**
118775 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTAAGAAAA
118796 TCGCAATGCGA
1 TCGCAATGCGA
118807 TACTGACTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:118819 original size:41 final size:39
Alignment explanation
Indices: 118774--118883 Score: 98
Period size: 41 Copynumber: 2.7 Consensus size: 39
118764 GAATAAGTAA
118774 ATCGCAATGCGAATTTGGAAAATCGCAATGCGATACTGACT
1 ATCGCAA-GCGAATTT-GAAAATCGCAATGCGATACTGACT
** *
118815 ATCGCAA-CGAGATAATACAAAATCGCAACGCGATACTGACT
1 ATCGCAAGCGA-AT--TTGAAAATCGCAATGCGATACTGACT
* *
118856 TTTGCAACGCG-ATTCTGAAAATCGCAAT
1 ATCGCAA-GCGAATT-TGAAAATCGCAAT
118884 CATCTTCAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
39 4 0.07
40 12 0.22
41 36 0.65
42 1 0.02
43 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (39 bp):
ATCGCAAGCGAATTTGAAAATCGCAATGCGATACTGACT
Found at i:118882 original size:20 final size:20
Alignment explanation
Indices: 118791--118882 Score: 76
Period size: 20 Copynumber: 4.5 Consensus size: 20
118781 TGCGAATTTG
*
118791 GAAAATCGCAATGCGATACT
1 GAAAATCGCAACGCGATACT
** * *
118811 GACTATCGCAACGAGATAAT
1 GAAAATCGCAACGCGATACT
*
118831 ACAAAATCGCAACGCGATACT
1 -GAAAATCGCAACGCGATACT
*** * *
118852 GACTTTTGCAACGCGATTCT
1 GAAAATCGCAACGCGATACT
118872 GAAAATCGCAA
1 GAAAATCGCAA
118883 TCATCTTCAA
Statistics
Matches: 51, Mismatches: 20, Indels: 2
0.70 0.27 0.03
Matches are distributed among these distances:
20 36 0.71
21 15 0.29
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (20 bp):
GAAAATCGCAACGCGATACT
Found at i:119150 original size:20 final size:20
Alignment explanation
Indices: 119095--119142 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
119085 CAACGGGGAA
119095 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
119115 ATCGCAACGCGAAAATGGCT
1 ATCGCAACGCGAAAATGGCT
119135 ATCGCAAC
1 ATCGCAAC
119143 TAGAAAATCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.35, C:0.27, G:0.23, T:0.15
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGGCT
Found at i:119210 original size:19 final size:19
Alignment explanation
Indices: 119169--119236 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
119159 GAAATGAAAA
119169 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
119185 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
119202 TCGCATTGCGATTATCATT
1 TCGCATTGCGATTTTCATT
119221 TCGCATTGCGATTTTC
1 TCGCATTGCGATTTTC
119237 TCGTTGCGAT
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
14 11 0.24
16 3 0.07
17 3 0.07
19 28 0.62
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:120865 original size:42 final size:42
Alignment explanation
Indices: 120819--120911 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
120809 CCTCTTCAAC
* * * *
120819 GATGACAGTGGCCTCTTGAACGGTGGGGGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTAAACGATGGGAGGGGACTCTTGAGG
* *
120861 GATGATAGGGGCCTCTTAAACGATTGGAGGGGACTCTTGAGG
1 GATGACAGGGGCCTCTTAAACGATGGGAGGGGACTCTTGAGG
120903 GATGACAGG
1 GATGACAGG
120912 TGAGTCGGGC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.22, C:0.15, G:0.42, T:0.22
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTAAACGATGGGAGGGGACTCTTGAGG
Found at i:120871 original size:21 final size:21
Alignment explanation
Indices: 120847--120907 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
120837 AACGGTGGGG
*
120847 GGGGACTCTTGAGGGATGATA
1 GGGGACTCTTGAGGGATGAGA
* * **
120868 GGGGCCTCTTAAACGATTG-GA
1 GGGGACTCTTGAGGGA-TGAGA
120889 GGGGACTCTTGAGGGATGA
1 GGGGACTCTTGAGGGATGA
120908 CAGGTGAGTC
Statistics
Matches: 29, Mismatches: 9, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
20 2 0.07
21 25 0.86
22 2 0.07
ACGTcount: A:0.23, C:0.13, G:0.41, T:0.23
Consensus pattern (21 bp):
GGGGACTCTTGAGGGATGAGA
Found at i:121278 original size:20 final size:20
Alignment explanation
Indices: 121253--121349 Score: 124
Period size: 20 Copynumber: 4.8 Consensus size: 20
121243 AGAATAGTTT
121253 ACTTTCGCAATGCGAAAATG
1 ACTTTCGCAATGCGAAAATG
*
121273 ACTTTCGCAACGCGAAAATG
1 ACTTTCGCAATGCGAAAATG
*
121293 ACTTTCGCAACGCGAAAATG
1 ACTTTCGCAATGCGAAAATG
* *
121313 ACTATCGCAATGCGGAAATCG
1 ACTTTCGCAATGCGAAAAT-G
* *
121334 -CTATCGCAATGTGAAA
1 ACTTTCGCAATGCGAAA
121350 TGAAAATCGC
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
20 69 0.99
21 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.22
Consensus pattern (20 bp):
ACTTTCGCAATGCGAAAATG
Found at i:121297 original size:40 final size:41
Alignment explanation
Indices: 121253--121372 Score: 131
Period size: 40 Copynumber: 3.0 Consensus size: 41
121243 AGAATAGTTT
*
121253 ACTTTCGCAATGCGAAAATGACTTTCGCAACGCGAAAAT-G
1 ACTTTCGCAATGCGAAAATGACTATCGCAACGCGAAAATCG
* * *
121293 ACTTTCGCAACGCGAAAATGACTATCGCAATGCGGAAATCG
1 ACTTTCGCAATGCGAAAATGACTATCGCAACGCGAAAATCG
* * **
121334 -CTATCGCAATGTG-AAATGAAAATCGCAACGAC-AAAATCG
1 ACTTTCGCAATGCGAAAATGACTATCGCAACG-CGAAAATCG
121373 CAATGCGAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
39 20 0.30
40 46 0.69
41 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.20
Consensus pattern (41 bp):
ACTTTCGCAATGCGAAAATGACTATCGCAACGCGAAAATCG
Found at i:121358 original size:19 final size:19
Alignment explanation
Indices: 121336--121394 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
121326 GGAAATCGCT
*
121336 ATCGCAATGTGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
121355 ATCGCAA--CG--A-CAAA
1 ATCGCAATGCGAAATGAAA
121369 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
121388 ATCGCAA
1 ATCGCAA
121395 CGACAAAATC
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 10 0.31
15 1 0.03
16 2 0.06
17 1 0.03
18 1 0.03
19 17 0.53
ACGTcount: A:0.47, C:0.19, G:0.19, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:121371 original size:14 final size:14
Alignment explanation
Indices: 121352--121408 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
121342 ATGTGAAATG
121352 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
121366 AAAATCGCAATGCGAAATG
1 AAAATCGCAA--CG--A-C
121385 AAAATCGCAACGAC
1 AAAATCGCAACGAC
121399 AAAATCGCAA
1 AAAATCGCAA
121409 TGCGATAAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.51, C:0.23, G:0.16, T:0.11
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:121383 original size:33 final size:33
Alignment explanation
Indices: 121336--121413 Score: 147
Period size: 33 Copynumber: 2.4 Consensus size: 33
121326 GGAAATCGCT
*
121336 ATCGCAATGTGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
121369 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
121402 ATCGCAATGCGA
1 ATCGCAATGCGA
121414 TAAGTCGCAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.46, C:0.21, G:0.19, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:121445 original size:19 final size:19
Alignment explanation
Indices: 121418--121520 Score: 72
Period size: 19 Copynumber: 5.6 Consensus size: 19
121408 ATGCGATAAG
*
121418 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
121437 TCGCGTTGCGA-TTT--TG
1 TCGCGTTGCGATTTTCATT
121453 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* ***
121470 TCGCATTGCGATAGCCATT
1 TCGCGTTGCGATTTTCATT
**
121489 TCCGCGTTGCGATAGTCATTT
1 T-CGCGTTGCGATTTTCA-TT
*
121510 TCGTGTTGCGA
1 TCGCGTTGCGA
121521 AAGTAAACTA
Statistics
Matches: 67, Mismatches: 10, Indels: 13
0.74 0.11 0.14
Matches are distributed among these distances:
14 8 0.12
15 3 0.04
16 2 0.03
17 2 0.03
18 3 0.04
19 23 0.34
20 23 0.34
21 3 0.04
ACGTcount: A:0.14, C:0.21, G:0.23, T:0.42
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:121500 original size:20 final size:19
Alignment explanation
Indices: 121466--121520 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
121456 TTGCGATTTT
*
121466 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
121485 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
121505 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
121521 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:122077 original size:18 final size:18
Alignment explanation
Indices: 122054--122101 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
122044 CGGGTCGATC
122054 AGGTGATGGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
*
122072 AGGTGATAGCTCTGGGTG
1 AGGTGATGGCTCTGGGTG
122090 AGGTGATGGCTC
1 AGGTGATGGCTC
122102 CCGAAGTGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.15, C:0.12, G:0.46, T:0.27
Consensus pattern (18 bp):
AGGTGATGGCTCTGGGTG
Found at i:123759 original size:20 final size:21
Alignment explanation
Indices: 123736--123784 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
123726 TCTGAGAGAT
123736 GGAGAT-AGACGGATTTCGCC
1 GGAGATGAGACGGATTTCGCC
* **
123756 GGAGATGGGGACGGATTTCGTT
1 GGAGAT-GAGACGGATTTCGCC
123778 GGAGATG
1 GGAGATG
123785 GGTGAGAGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 6 0.25
21 1 0.04
22 17 0.71
ACGTcount: A:0.22, C:0.12, G:0.43, T:0.22
Consensus pattern (21 bp):
GGAGATGAGACGGATTTCGCC
Found at i:123770 original size:22 final size:22
Alignment explanation
Indices: 123743--123786 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
123733 GATGGAGATA
123743 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
**
123765 GACGGATTTCGTTGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
123787 TGAGAGAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.18, C:0.14, G:0.45, T:0.23
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:124044 original size:20 final size:20
Alignment explanation
Indices: 123980--124045 Score: 78
Period size: 20 Copynumber: 3.3 Consensus size: 20
123970 TATTATCTCA
**
123980 TTGCGAAAGTCAGTATTACG
1 TTGCGAAAGTCAGTATCGCG
* * * *
124000 TTGCAAAATTAAGTATCGAG
1 TTGCGAAAGTCAGTATCGCG
124020 TTGCGAAAGTCAGTATCGCG
1 TTGCGAAAGTCAGTATCGCG
124040 TTGCGA
1 TTGCGA
124046 TTTTCCAAAT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (20 bp):
TTGCGAAAGTCAGTATCGCG
Found at i:124117 original size:21 final size:22
Alignment explanation
Indices: 124086--124128 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
124076 TTGCATTGTG
124086 AATTGGGAAAATCGCAATGCGA
1 AATTGGGAAAATCGCAATGCGA
*
124108 AATT-GGAAAATCGCATTGCGA
1 AATTGGGAAAATCGCAATGCGA
124129 TAGTCATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.21
Consensus pattern (22 bp):
AATTGGGAAAATCGCAATGCGA
Found at i:124607 original size:21 final size:21
Alignment explanation
Indices: 124581--124632 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
124571 AGACAGTGGA
124581 ACTTTACAACGAACCTGATCT
1 ACTTTACAACGAACCTGATCT
*
124602 ACTTTACAACGAAGCTGATCT
1 ACTTTACAACGAACCTGATCT
*
124623 ACCTTACAAC
1 ACTTTACAAC
124633 CCAACCCCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.35, C:0.29, G:0.10, T:0.27
Consensus pattern (21 bp):
ACTTTACAACGAACCTGATCT
Found at i:126321 original size:35 final size:33
Alignment explanation
Indices: 126275--126339 Score: 103
Period size: 35 Copynumber: 1.9 Consensus size: 33
126265 GCAACCAAAA
126275 GCCATCTAGAAGCACATGCAATTGTCAACAATGCT
1 GCCATCTAGAAGC-CATGC-ATTGTCAACAATGCT
*
126310 GCCATCTAGAAGCCATGCATTTTCAACAAT
1 GCCATCTAGAAGCCATGCATTGTCAACAAT
126340 CTCCCACTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 11 0.38
34 5 0.17
35 13 0.45
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (33 bp):
GCCATCTAGAAGCCATGCATTGTCAACAATGCT
Found at i:135714 original size:26 final size:26
Alignment explanation
Indices: 135678--135761 Score: 117
Period size: 26 Copynumber: 3.5 Consensus size: 26
135668 TGATGATTTG
135678 ATGAAAGGATGCCATAATTAAAATGC
1 ATGAAAGGATGCCATAATTAAAATGC
*
135704 ATGAAAGGATG-C---ATT--AAGGC
1 ATGAAAGGATGCCATAATTAAAATGC
135724 ATGAAAGGATGCCATAATTAAAATGC
1 ATGAAAGGATGCCATAATTAAAATGC
135750 ATGAAAGGATGC
1 ATGAAAGGATGC
135762 ATTAAATCAT
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
20 15 0.30
21 1 0.02
22 3 0.06
24 3 0.06
25 1 0.02
26 27 0.54
ACGTcount: A:0.44, C:0.11, G:0.24, T:0.21
Consensus pattern (26 bp):
ATGAAAGGATGCCATAATTAAAATGC
Found at i:135727 original size:20 final size:20
Alignment explanation
Indices: 135702--135779 Score: 84
Period size: 20 Copynumber: 3.6 Consensus size: 20
135692 TAATTAAAAT
*
135702 GCATGAAAGGATGCATTAAG
1 GCATGAAAGGATGCATTAAA
135722 GCATGAAAGGATGCCATAATTAAAA
1 GCATGAAAGGATG-C---ATT-AAA
135747 TGCATGAAAGGATGCATTAAA
1 -GCATGAAAGGATGCATTAAA
*
135768 TCATGAAAGGAT
1 GCATGAAAGGAT
135780 ACTATAGTTA
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
20 24 0.48
21 4 0.08
22 3 0.06
24 3 0.06
25 3 0.06
26 13 0.26
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.22
Consensus pattern (20 bp):
GCATGAAAGGATGCATTAAA
Found at i:135731 original size:46 final size:46
Alignment explanation
Indices: 135678--135821 Score: 189
Period size: 46 Copynumber: 3.1 Consensus size: 46
135668 TGATGATTTG
*
135678 ATGAAAGGATGCCATAATTAAAATGCATGAAAGGATGCATTAAGGC
1 ATGAAAGGATGCCATAATTAAAATGCATGAAAGGATGCATTAAAGC
*
135724 ATGAAAGGATGCCATAATTAAAATGCATGAAAGGATGCATTAAATC
1 ATGAAAGGATGCCATAATTAAAATGCATGAAAGGATGCATTAAAGC
* * * * * * * *
135770 ATGAAAGGATACTATAGTTAAATTGCATCAATGGATGTATTAATGC
1 ATGAAAGGATGCCATAATTAAAATGCATGAAAGGATGCATTAAAGC
*
135816 GTGAAA
1 ATGAAA
135822 AGAGACATAA
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 86 1.00
ACGTcount: A:0.43, C:0.10, G:0.22, T:0.26
Consensus pattern (46 bp):
ATGAAAGGATGCCATAATTAAAATGCATGAAAGGATGCATTAAAGC
Done.