genome.fa.s2830.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002830.1 Hibiscus syriacus cultivar Beakdansim tig00005821_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90650

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9287--9330	22	2.0	22	81	0	52	36	40	2	20	1.65
9671--9699	9	3.2	9	100	0	58	79	0	20	0	0.74
9663--9713	18	2.9	17	80	8	57	74	3	15	5	1.16
22831--22870	20	1.9	22	90	10	66	37	40	10	12	1.77
23449--23488	21	1.9	21	89	0	62	30	12	12	45	1.79
25761--25949	45	4.2	45	84	2	245	31	23	5	39	1.79
25774--25951	90	2.0	91	92	4	297	30	23	6	39	1.79
25910--26015	33	3.2	33	93	0	167	26	26	9	37	1.87
27536--27603	29	2.4	28	78	7	73	32	19	7	41	1.79
30305--30394	21	4.3	22	72	18	68	5	15	0	78	0.92
30305--30387	33	2.6	31	83	11	96	6	16	0	77	0.97
30318--30394	10	7.3	10	74	20	59	6	15	0	77	0.95
30307--30365	17	3.5	17	84	11	86	5	16	0	77	0.93
30305--30395	26	3.6	25	71	20	64	6	15	0	78	0.95
32980--33235	45	5.7	45	84	1	318	31	23	6	37	1.81
32988--33239	90	2.8	90	92	1	398	31	23	7	37	1.82
33357--33478	61	2.0	61	80	3	138	32	27	17	22	1.96
35199--35233	17	2.0	18	88	5	54	37	17	0	45	1.48
35865--35935	29	2.4	28	78	17	81	33	15	9	40	1.80
37190--37251	3	20.7	3	96	0	115	33	1	0	64	1.03
38678--38715	19	2.0	20	84	5	51	39	2	0	57	1.12
39406--39456	18	2.9	17	72	18	50	25	0	1	72	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49105--49134	11	2.7	11	100	0	60	90	0	10	0	0.47
50282--50905	83	7.5	83	94	0	1079	27	12	22	37	1.90
51663--52178	113	4.6	113	95	1	885	37	11	21	30	1.88
52430--52488	3	19.7	3	96	0	100	33	3	0	62	1.12
55625--55717	10	9.8	9	68	23	57	5	13	2	78	1.02
55626--55658	17	1.9	17	93	0	57	3	15	0	81	0.80
55624--55715	46	2.0	46	85	8	125	6	14	2	77	1.06
58303--58526	45	5.0	45	85	2	290	32	22	6	39	1.79
58303--58526	90	2.5	90	86	2	326	32	22	6	39	1.79
58635--58756	61	2.0	61	85	0	163	31	28	16	23	1.96
59952--60019	29	2.4	28	80	7	82	32	20	7	39	1.80
62743--62797	17	3.3	16	78	12	58	9	14	0	76	1.02
65327--65448	40	3.0	40	100	0	244	22	17	27	32	1.96
65553--65678	47	2.8	45	84	8	157	39	7	21	30	1.82
68505--68863	45	8.0	45	85	1	479	30	24	6	38	1.81
68513--68860	90	3.9	90	94	1	581	30	24	7	38	1.82
68977--69093	61	1.9	61	82	6	148	32	27	15	24	1.95
74955--75028	38	2.0	38	91	2	123	10	10	40	37	1.75
74721--75318	270	2.2	268	88	4	888	20	11	31	36	1.88
75221--75341	43	3.0	41	83	12	169	13	12	37	37	1.82
75853--75936	44	1.9	44	97	0	159	34	22	15	27	1.94
86666--86701	18	2.0	18	94	0	63	22	22	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86668--86708	18	2.3	18	86	0	55	24	24	17	34	1.96
89477--89842	153	2.4	152	84	6	483	29	18	6	45	1.76

Tables:   1

The End!