genome.fa.s2831.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002831.1 Hibiscus syriacus cultivar Beakdansim tig00005822_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71668

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1533--1559	3	9.0	3	100	0	54	0	33	0	66	0.92
2055--2124	33	2.1	33	83	0	86	20	30	15	34	1.93
3197--3230	17	1.9	18	88	5	52	41	17	11	29	1.85
8122--8160	20	1.9	21	84	5	53	30	0	15	53	1.42
8641--8688	21	2.3	20	82	3	60	22	8	35	33	1.84
16488--16585	45	2.2	45	83	3	117	50	1	2	46	1.19
16511--16660	15	9.5	15	76	15	133	44	0	4	51	1.25
16622--16678	18	3.4	18	69	18	59	33	0	12	54	1.38
16608--16683	32	2.4	32	97	0	143	36	0	9	53	1.33
16631--17392	54	14.6	54	69	18	379	34	0	13	52	1.41
16715--17201	22	17.5	31	70	26	179	34	0	13	52	1.40
16747--17137	22	15.8	22	69	20	206	34	0	13	51	1.41
16747--17382	76	8.2	76	82	9	716	34	0	13	52	1.41
17140--17197	18	3.4	18	70	18	61	29	0	13	56	1.38
17095--17377	80	3.5	80	91	4	435	33	0	13	52	1.41
17340--17382	22	2.0	22	95	0	77	37	0	11	51	1.39
17407--17465	31	1.9	31	85	0	82	42	8	5	44	1.57
17485--17525	16	2.6	16	96	0	73	24	2	7	65	1.30
19269--19299	15	2.1	15	100	0	62	32	12	6	48	1.67
20235--20337	41	2.5	41	83	10	115	21	18	22	37	1.94
20474--20510	6	6.5	6	96	3	60	29	54	16	0	1.43
21019--21136	6	20.5	6	99	0	201	0	16	52	30	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22552--22581	13	2.3	13	94	0	51	16	26	40	16	1.90
22987--23061	22	3.4	22	94	0	132	37	26	17	18	1.93
23670--23716	23	2.0	23	100	0	94	42	12	0	44	1.42
26477--26533	30	1.9	30	96	0	105	15	14	8	61	1.56
26477--26541	30	2.3	29	87	10	91	15	12	7	64	1.48
30870--30950	23	3.5	23	80	9	85	12	18	20	48	1.80
31744--31867	35	3.5	35	89	0	185	26	20	16	36	1.94
31851--31945	42	2.3	42	84	0	118	29	15	20	34	1.93
31851--31968	42	2.8	42	79	7	107	26	19	17	36	1.94
35507--35621	35	3.3	35	83	0	140	43	18	0	37	1.56
35615--35689	35	2.1	35	90	0	114	36	1	18	44	1.59
35666--35737	24	3.0	24	66	28	62	37	5	13	43	1.68
35888--35947	29	2.1	29	84	6	77	30	8	28	33	1.86
38535--38583	2	24.5	2	100	0	98	48	0	0	51	1.00
39472--39666	35	5.5	35	83	1	219	21	23	20	34	1.97
39472--39664	71	2.7	70	84	0	233	21	23	20	34	1.96
41216--41271	26	2.2	25	84	6	76	42	1	1	53	1.21
41205--41266	23	2.6	23	76	7	61	38	3	1	56	1.25
42588--42620	17	2.1	17	88	11	52	30	0	0	69	0.88
42500--42771	148	1.8	147	85	3	377	38	6	5	49	1.51
44919--45001	6	13.0	6	72	18	53	16	13	6	63	1.48
44920--45003	26	3.3	23	77	20	87	17	11	5	64	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44916--44988	20	3.7	19	78	8	76	16	13	6	63	1.51
47032--47089	3	19.0	3	92	3	98	67	0	31	1	1.01
47032--47106	12	6.2	12	90	6	89	72	0	26	1	0.93
47774--47824	26	1.9	27	88	4	77	45	1	0	52	1.12
48594--48658	28	2.3	28	91	0	103	30	18	23	27	1.97
50795--50834	10	3.9	11	84	15	50	80	0	15	5	0.88
50778--50829	19	2.8	18	80	8	59	78	0	15	5	0.92
51942--52166	38	6.0	36	81	10	206	48	6	2	43	1.40
51955--52165	37	5.7	36	82	9	216	48	6	2	42	1.42
51959--52137	72	2.4	73	85	7	229	51	6	2	40	1.39
52151--52252	2	52.5	2	77	16	72	51	2	0	44	1.23
52133--52221	46	1.9	47	86	11	130	48	6	2	42	1.42
52918--53365	36	12.8	36	74	14	339	40	12	18	27	1.87
53140--53191	17	3.1	17	71	18	54	42	13	21	23	1.88
52928--53365	172	2.5	173	91	2	709	41	12	18	27	1.87
54718--54897	88	2.0	88	90	0	279	31	20	15	32	1.94
57725--57766	20	2.1	20	82	8	50	71	2	7	19	1.20
59038--59080	11	3.6	12	78	12	52	51	4	0	44	1.22
59134--59253	39	3.2	39	82	8	117	48	7	3	40	1.48
59190--59307	39	3.1	38	80	8	114	48	6	3	41	1.46
59305--59348	4	11.0	4	90	0	70	45	25	4	25	1.72
59368--59770	2	202.5	2	98	0	783	49	50	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59782--60143	4	90.5	4	96	0	625	46	27	0	25	1.53
62986--63024	18	2.2	18	90	0	60	25	7	23	43	1.80
63905--63944	2	20.0	2	100	0	80	50	0	0	50	1.00
64360--64384	13	1.9	13	100	0	50	24	16	24	36	1.94
64548--64574	2	13.5	2	100	0	54	48	0	0	51	1.00

Tables:   1

The End!