genome.fa.s2832.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002832.1 Hibiscus syriacus cultivar Beakdansim tig00005824_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121628

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2492--2530	20	2.0	20	89	0	60	33	23	10	33	1.88
3703--3955	95	2.7	94	84	3	296	32	16	17	33	1.92
4448--4506	30	2.0	30	81	12	70	57	11	10	20	1.63
7607--7648	17	2.4	18	92	7	70	73	0	4	21	1.01
7827--7895	34	2.0	34	89	10	106	71	2	0	26	1.00
7811--7897	40	2.1	40	83	8	104	68	2	1	27	1.08
8049--8237	99	1.9	102	81	13	239	69	4	5	20	1.27
9191--9243	2	27.0	2	96	3	99	50	0	0	49	1.00
24410--24460	26	2.0	26	88	3	77	15	21	15	47	1.83
29097--29147	26	2.0	26	88	3	77	15	21	15	47	1.83
30886--30917	2	16.0	2	100	0	64	50	0	0	50	1.00
32173--32206	16	2.1	16	94	0	59	32	8	26	32	1.87
39037--39075	19	2.1	19	85	4	53	66	5	15	12	1.41
46591--46622	2	16.0	2	100	0	64	50	0	0	50	1.00
46627--46673	20	2.4	20	89	10	71	65	0	0	34	0.93
46896--47067	84	2.0	84	86	2	238	24	18	26	31	1.97
47072--47222	67	2.2	68	87	4	207	36	10	20	32	1.87
47102--47255	36	4.4	36	77	17	164	37	10	21	30	1.87
47227--47270	21	2.0	22	91	4	72	40	9	18	31	1.81
47356--47585	116	2.0	116	87	1	336	23	18	26	31	1.97
52484--52526	3	13.7	3	85	4	50	67	0	0	32	0.91
52468--52535	23	3.0	22	76	21	68	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52465--52535	26	2.6	27	82	10	92	69	0	0	30	0.89
52492--52535	20	2.2	20	88	8	63	68	0	0	31	0.90
54169--54220	21	2.4	21	87	6	68	55	0	11	32	1.36
54181--54220	21	1.9	21	94	0	71	57	0	12	30	1.36
62806--62845	21	1.9	21	85	10	55	35	10	2	52	1.48
65161--65203	16	2.7	15	82	10	50	76	0	9	13	1.01
65168--65206	16	2.4	16	86	0	60	76	0	7	15	0.99
67078--67219	64	2.2	65	85	5	182	29	23	17	29	1.97
73059--73140	23	3.7	22	72	8	76	24	26	20	28	1.99
75793--75867	35	2.1	38	87	7	111	42	8	2	46	1.47
75886--75915	12	2.5	12	94	0	51	70	0	0	30	0.88
78616--78664	22	2.2	22	85	7	64	44	14	14	26	1.83
80267--80660	160	2.5	160	90	0	610	33	10	11	44	1.75
80267--80705	160	2.7	154	80	11	495	34	10	11	43	1.75
82556--82624	30	2.3	31	82	9	81	33	8	23	34	1.85
85290--85370	22	3.7	22	91	1	128	25	13	33	27	1.94
85296--85385	44	2.0	44	82	4	110	28	16	28	25	1.97
85411--85476	22	3.0	22	81	0	87	24	22	12	40	1.88
90533--90590	13	3.8	16	69	21	52	68	3	0	27	1.05
90524--90595	28	2.6	28	83	12	105	70	2	0	26	1.00
91538--91580	8	5.4	8	81	18	54	39	0	0	60	0.97
91538--91576	15	2.5	16	91	4	62	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91538--91584	15	3.1	15	82	14	60	38	0	0	61	0.96
91594--91630	17	2.2	17	86	13	51	56	0	5	37	1.22
94360--94412	21	2.5	21	81	0	61	22	26	16	33	1.96
94405--94515	20	5.5	20	85	2	159	39	18	19	21	1.92
94402--94533	40	3.3	39	80	13	142	38	20	18	21	1.93
94712--94773	18	3.0	22	69	26	62	27	38	16	17	1.91
95096--95167	20	3.6	20	90	0	108	34	22	19	23	1.96
95193--95242	20	2.5	20	90	0	73	18	18	28	36	1.94
95210--95264	20	2.8	20	91	0	83	10	16	23	49	1.77
95229--95272	20	2.2	20	87	0	61	13	13	20	52	1.74
97130--97289	20	8.3	20	85	8	206	37	21	20	21	1.94
97130--97314	40	4.9	36	78	15	171	39	21	20	19	1.93
97133--97331	54	3.6	54	81	8	229	39	20	20	19	1.93
97340--97386	20	2.3	20	88	0	67	21	19	23	36	1.95
97358--97453	33	2.8	33	77	3	102	17	19	20	41	1.90
97308--97476	87	1.9	87	90	0	266	20	18	21	39	1.92
97425--97473	20	2.5	20	89	0	71	22	20	22	34	1.97
99419--99454	14	2.6	14	90	0	54	30	0	22	47	1.52
99546--99603	19	2.9	20	84	5	73	44	20	18	15	1.86
99610--99705	33	2.9	34	88	3	140	13	23	20	41	1.88
99677--99770	20	4.7	20	81	2	118	19	21	24	35	1.96
102160--102211	24	2.2	24	82	0	59	36	21	19	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103059--103205	20	7.3	20	80	3	161	22	19	19	39	1.92
103202--103247	21	2.2	21	88	7	67	39	17	26	17	1.91
105211--105267	18	2.9	19	85	12	80	49	8	12	29	1.70
107269--107339	34	2.1	34	86	2	99	25	25	15	33	1.95
107695--107734	19	2.0	21	90	9	66	32	20	20	27	1.97
107761--107835	20	3.8	20	78	1	71	37	18	6	37	1.77
109815--109884	21	3.2	21	84	11	63	32	27	17	22	1.96
109826--109885	23	2.7	22	87	10	79	30	28	20	21	1.98

Tables:   1

The End!