genome.fa.s2833.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002833.1 Hibiscus syriacus cultivar Beakdansim tig00005828_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66737

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522--1022	196	2.6	194	86	6	721	32	16	13	37	1.88
5932--5991	31	2.0	30	83	9	77	36	3	23	36	1.71
6208--6256	21	2.3	21	78	0	53	24	22	20	32	1.98
12361--12480	64	1.9	63	84	1	159	33	21	17	27	1.96
12760--12821	25	2.4	25	81	7	72	33	12	11	41	1.79
12864--12923	31	2.0	30	83	9	77	36	3	23	36	1.71
13147--13216	23	3.0	23	82	0	86	21	21	27	30	1.98
13390--13417	13	2.2	13	100	0	56	32	14	0	53	1.41
14611--14656	20	2.3	19	82	10	65	19	17	10	52	1.74
15492--15579	20	4.3	20	71	2	77	32	22	17	27	1.96
15573--15641	20	3.5	20	82	7	95	42	26	14	17	1.87
16534--16587	24	2.2	24	93	0	90	20	18	20	40	1.91
16762--16794	12	2.8	12	90	0	57	72	0	24	3	0.98
18855--18890	18	2.0	18	88	0	54	55	22	2	19	1.56
19616--19702	39	2.2	39	95	0	156	48	19	14	17	1.81
19876--19959	20	4.5	20	74	17	99	40	20	20	19	1.92
20063--20117	25	2.2	25	96	0	101	25	7	21	45	1.77
20361--20447	39	2.2	39	95	0	156	48	19	14	17	1.81
22245--22342	21	4.7	21	70	2	63	22	20	33	23	1.97
24772--24819	22	2.2	22	96	0	87	20	12	43	22	1.86
24947--24995	20	2.5	20	86	0	71	20	18	18	42	1.89
25014--25087	20	3.7	20	82	7	96	24	13	31	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29083--29128	20	2.2	22	88	7	69	47	0	2	50	1.13
31059--31106	23	2.2	21	88	7	69	60	2	25	12	1.43
31066--31118	12	4.5	11	75	11	52	60	1	22	15	1.44
32303--32515	36	5.9	36	84	4	268	21	24	18	35	1.95
33929--34141	36	5.9	36	85	2	275	20	24	18	35	1.95
35560--35772	36	5.9	36	83	2	230	19	23	18	38	1.93
35560--35777	72	3.0	72	84	2	260	19	22	18	39	1.92
39626--39674	19	2.7	17	84	9	53	26	20	28	24	1.99
39646--39855	65	3.3	63	78	9	219	26	19	23	30	1.98
40307--40340	2	17.0	2	100	0	68	50	0	0	50	1.00
48272--48430	65	2.5	64	85	6	205	27	18	22	30	1.98
49688--49730	21	2.0	22	86	4	61	23	13	27	34	1.93
51549--51594	2	23.0	2	100	0	92	50	0	0	50	1.00
58183--58225	17	2.6	17	79	17	54	9	20	0	69	1.15
63609--63648	21	1.9	21	94	0	71	12	25	37	25	1.91
63608--63691	21	3.9	22	70	13	59	19	26	33	21	1.97

Tables:   1

The End!