Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01002834.1 Hibiscus syriacus cultivar Beakdansim tig00005830_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22622
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:14434 original size:19 final size:20

Alignment explanation


    Indices: 14387--14437  Score: 68
    Period size: 19  Copynumber: 2.6  Consensus size: 20

      14377 GAAACCCCTT

                             ** 
      14387 TGAAAATACATGATTTTTGA
          1 TGAAAATACATGATTTTAAA

                                
      14407 TGAAAATACATGA-TTTAAA
          1 TGAAAATACATGATTTTAAA

                *       
      14426 TGAAGATACATG
          1 TGAAAATACATG

      14438 CTCTTGGCCG


Statistics
Matches: 28,  Mismatches: 3, Indels: 1
        0.88            0.09        0.03

Matches are distributed among these distances:
  19   15  0.54
  20   13  0.46

ACGTcount: A:0.45, C:0.06, G:0.16, T:0.33


Consensus pattern (20 bp):   
TGAAAATACATGATTTTAAA

Found at i:15086 original size:33 final size:33

Alignment explanation


    Indices: 15044--15112  Score: 86
    Period size: 33  Copynumber: 2.1  Consensus size: 33

      15034 GTTGATGAAT

                               *              
      15044 GAAGGATGAT-TTAATGGTGATGAAATGGTAATG
          1 GAAGGATGATGTTAATGG-CATGAAATGGTAATG

                          *        *     *   
      15077 GAAGGATGATGTTATTGGCATGATATGGTGATG
          1 GAAGGATGATGTTAATGGCATGAAATGGTAATG

               
      15110 GAA
          1 GAA

      15113 TATGGTGATG


Statistics
Matches: 31,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  33   25  0.81
  34    6  0.19

ACGTcount: A:0.33, C:0.01, G:0.35, T:0.30


Consensus pattern (33 bp):   
GAAGGATGATGTTAATGGCATGAAATGGTAATG
Done.