Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002835.1 Hibiscus syriacus cultivar Beakdansim tig00005833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62311

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1031--1082
13
4.0
13
76
0
59
36
19
19
25
1.95
5298--5332
4
8.8
4
100
0
70
77
0
0
22
0.78
20205--20299
35
2.7
35
81
14
122
51
20
4
24
1.64
28114--28174
20
2.9
20
85
7
59
24
32
26
16
1.96
28157--28196
21
1.9
21
89
0
62
25
40
25
10
1.86
29822--29847
12
2.2
12
100
0
52
34
30
34
0
1.58
30810--30850
21
2.0
21
95
0
73
24
34
24
17
1.96
30900--30944
20
2.2
20
96
0
81
13
44
26
15
1.83
33898--33933
2
18.0
2
100
0
72
50
0
0
50
1.00
34744--34774
3
10.3
3
100
0
62
64
0
0
35
0.94
36742--36815
25
3.0
25
84
4
96
31
21
24
22
1.99
36694--36815
24
5.1
24
78
9
92
31
22
23
22
1.98
36941--36979
14
2.7
15
88
4
53
33
17
7
41
1.79
43067--43140
25
3.0
25
78
7
89
29
21
24
24
1.99
43067--43140
24
3.0
24
80
5
87
29
21
24
24
1.99
43244--43281
14
2.6
15
87
4
51
36
18
7
36
1.80
47539--47577
20
2.0
19
95
5
69
30
17
30
20
1.96
58129--58170
22
1.9
22
85
9
59
21
2
0
76
0.90
58126--58180
28
2.0
28
82
7
67
23
3
0
72
1.00
60867--60930
31
2.1
31
87
0
92
25
7
15
51
1.70

Tables:   1

The End!