Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002836.1 Hibiscus syriacus cultivar Beakdansim tig00005835_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115481

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
825--850
13
2.0
13
100
0
52
38
0
7
53
1.30
3067--3094
2
14.0
2
100
0
56
50
0
0
50
1.00
12065--12104
21
1.9
21
94
0
71
25
25
22
27
2.00
15101--15416
43
7.3
42
76
8
221
51
7
16
25
1.70
15407--15436
15
1.9
16
93
6
53
66
0
6
26
1.16
27645--27682
3
13.0
3
83
5
51
36
0
0
63
0.95
27807--27848
12
3.7
12
81
6
52
50
45
0
4
1.23
27798--27844
24
2.0
24
87
8
69
46
46
0
6
1.28
32890--32929
14
2.9
14
85
3
55
5
10
22
62
1.46
33452--33479
2
14.0
2
100
0
56
50
0
0
50
1.00
33482--33973
247
2.0
251
86
1
704
41
17
12
28
1.86
36392--36422
15
2.1
15
100
0
62
6
12
45
35
1.68
36857--37843
107
9.3
106
92
2
1518
24
25
18
31
1.97
36857--37843
53
18.5
53
91
2
1498
24
25
18
31
1.97
39194--39281
8
10.9
8
71
24
53
14
7
0
77
0.99
39180--39284
27
4.4
24
78
15
110
13
6
0
79
0.98
39186--39285
12
8.4
12
77
16
102
14
8
0
78
0.97
39172--39292
64
1.9
61
83
11
156
12
6
1
79
1.00
39171--39289
25
4.8
25
74
18
106
12
6
1
78
1.01
51851--51919
23
3.0
23
68
21
56
36
1
0
62
1.04
51850--51874
7
3.6
7
100
0
50
40
0
0
60
0.97
52497--52559
18
3.3
19
71
20
67
50
1
3
44
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52490--52560
21
3.6
21
73
19
71
53
1
2
42
1.24
52556--52662
15
7.3
15
65
20
66
38
10
0
50
1.43
52556--52591
14
2.6
14
86
13
56
36
8
0
55
1.30
52568--52626
22
2.6
22
83
2
64
35
13
0
50
1.42
53081--53120
2
20.0
2
94
0
71
50
2
0
47
1.14
53201--54036
6
139.7
6
93
3
1193
45
34
2
16
1.62
56532--56885
183
2.0
179
90
4
568
41
3
9
45
1.54
58557--58733
88
2.0
88
96
0
327
36
24
18
20
1.95
60666--60709
19
2.3
19
88
7
63
54
2
2
40
1.25
65413--65437
11
2.3
11
100
0
50
8
28
8
56
1.57
67294--67368
16
4.7
16
80
6
73
5
14
1
78
0.99
67322--67367
14
3.3
13
80
16
56
2
15
0
82
0.76
67278--67341
28
2.3
28
83
5
76
7
10
3
78
1.07
85307--85409
42
2.5
41
84
3
134
23
24
23
29
1.99
84967--85421
249
1.8
249
92
0
766
31
18
17
32
1.94
85307--85431
41
3.0
40
77
9
128
25
23
23
28
2.00
85494--85532
17
2.3
17
86
0
51
76
0
2
20
0.90
90038--90075
19
2.0
19
100
0
76
21
15
5
57
1.57
91174--91225
17
3.2
17
75
10
54
32
3
13
50
1.60
91896--91920
11
2.3
11
100
0
50
0
8
0
92
0.40
94580--94666
35
2.5
34
80
12
97
54
10
8
27
1.62
104471--104739
91
3.0
90
81
4
297
30
29
18
21
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111259--111297
19
2.1
19
85
9
53
56
0
2
41
1.13
111420--111458
18
2.2
18
86
9
53
61
0
0
38
0.96
113069--113160
30
3.1
30
82
4
107
42
8
9
39
1.69
113754--113788
18
1.9
18
100
0
70
57
5
5
31
1.46
114279--114316
13
2.9
14
84
11
53
47
0
7
44
1.32

Tables:   1

The End!