genome.fa.s2837.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002837.1 Hibiscus syriacus cultivar Beakdansim tig00005840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55888

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2780--2869	36	2.5	36	75	10	94	22	11	15	51	1.75
2766--2876	24	4.6	24	80	2	107	21	10	15	52	1.73
8971--9295	45	7.2	45	91	0	515	21	23	12	42	1.87
9649--9847	95	2.1	96	85	5	262	26	22	10	41	1.86
15987--16356	45	8.2	45	88	0	517	20	21	13	45	1.85
16711--16908	95	2.1	96	83	2	247	26	23	10	39	1.86
19104--19256	45	3.4	45	84	1	200	32	8	18	40	1.81
19412--19632	58	3.8	58	88	5	306	34	8	14	43	1.74
19648--19803	58	2.7	59	80	1	179	37	3	12	46	1.57
19852--19925	39	1.9	38	91	2	121	33	5	14	45	1.68
19837--20195	97	3.8	97	85	4	460	37	6	13	41	1.71
20140--20481	39	8.6	39	80	6	389	36	7	14	41	1.73
20140--20439	125	2.5	119	86	5	390	37	7	14	40	1.73
20153--20477	164	2.0	164	86	5	451	36	7	14	41	1.73
24852--25200	45	7.8	45	88	2	506	42	6	20	30	1.78
26768--26811	21	2.1	21	87	8	63	52	2	0	45	1.13
27188--27232	19	2.4	19	92	0	72	28	2	20	48	1.61
27198--27256	19	3.2	19	80	7	59	40	0	13	45	1.43
27247--27289	20	2.2	20	83	4	52	55	4	0	39	1.20
27909--27938	14	2.1	14	93	0	51	80	10	0	10	0.92
32572--32603	16	2.0	16	93	0	55	53	6	25	15	1.65
32744--32951	107	2.0	105	81	5	249	38	16	13	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33606--33655	18	2.8	18	87	0	64	50	14	20	16	1.78
37966--38042	39	2.0	39	86	0	109	19	33	35	11	1.88
40068--40250	31	5.9	31	78	7	156	15	26	28	29	1.96
40068--40234	62	2.7	62	84	5	212	14	25	29	29	1.95
40068--40250	93	2.0	93	83	4	235	15	26	28	29	1.96
42213--42334	53	2.3	55	81	9	164	27	18	20	33	1.96
43063--43100	16	2.4	16	86	4	51	36	13	5	44	1.66
43782--43817	16	2.2	17	90	5	56	38	0	25	36	1.56
43781--43819	17	2.3	18	82	13	55	41	0	23	35	1.55
43949--44756	225	3.6	224	82	5	911	38	12	13	34	1.83
44382--45137	381	2.0	383	86	2	1074	37	11	14	36	1.83
44758--45236	225	2.1	223	89	2	710	37	12	14	34	1.85
46356--46724	194	1.9	194	82	5	460	31	16	13	38	1.87
51391--51429	20	1.9	20	84	5	51	48	7	0	43	1.31
51768--51871	31	3.4	31	97	0	190	17	17	23	42	1.89

Tables:   1

The End!