genome.fa.s2838.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002838.1 Hibiscus syriacus cultivar Beakdansim tig00005842_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146411

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1190	182	6.6	182	80	9	1349	24	15	28	31	1.96
1--1190	538	2.2	531	83	8	1488	24	15	28	31	1.96
1572--1879	82	3.8	82	74	13	219	27	15	21	34	1.94
1676--2077	79	5.0	80	76	10	313	25	16	22	35	1.94
2406--2486	32	2.5	32	81	0	90	32	23	13	30	1.93
4633--4666	8	4.4	8	88	3	52	55	11	17	14	1.68
16420--16450	15	2.1	15	100	0	62	32	19	22	25	1.97
16473--16530	29	2.0	29	93	0	98	20	36	34	8	1.84
16479--16544	29	2.3	29	81	0	78	22	34	30	12	1.91
16588--16636	22	2.2	22	92	0	80	8	53	16	22	1.69
17101--17204	30	3.4	30	84	11	133	39	0	13	46	1.50
17147--17201	15	3.6	16	70	20	55	41	0	14	43	1.45
17258--17291	15	2.2	16	94	5	61	38	0	5	55	1.24
19803--19899	3	33.7	3	72	8	58	41	4	2	52	1.32
19728--20323	26	23.8	26	77	13	413	44	8	1	45	1.44
19727--20330	98	6.1	100	76	14	465	44	7	1	45	1.43
20273--20360	26	3.9	22	73	25	69	44	7	1	46	1.40
19728--20310	115	5.0	110	80	13	543	44	8	1	45	1.44
19728--20409	227	3.0	224	80	12	615	44	8	1	45	1.44
21559--21607	17	2.7	17	84	9	62	44	12	0	42	1.41
22541--22679	65	2.1	65	90	0	224	25	18	33	23	1.97
22789--22840	19	2.7	20	90	6	88	19	48	11	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22886--22994	29	3.8	29	98	0	200	7	26	36	29	1.83
24443--24484	18	2.3	18	84	12	50	38	11	26	23	1.90
24532--24590	29	2.0	29	100	0	118	23	13	13	49	1.78
29209--29267	29	2.0	29	100	0	118	23	13	13	49	1.78
30816--30855	5	7.6	5	83	10	53	20	5	0	75	0.99
30816--30855	11	3.8	10	83	9	53	20	5	0	75	0.99
30821--30863	22	2.0	21	82	13	52	25	6	0	67	1.15
30875--30934	19	3.2	19	84	13	63	11	10	0	78	0.97
30891--30934	19	2.4	19	92	7	74	9	9	0	81	0.87
33518--33704	95	2.0	96	86	1	268	34	17	17	31	1.93
36933--37008	23	3.3	23	94	0	134	21	26	26	26	1.99
36934--37024	23	4.0	23	89	0	83	21	25	25	27	2.00
37948--38740	84	9.4	84	84	2	905	31	24	20	24	1.98
37954--38740	252	3.1	250	86	3	1069	31	24	20	24	1.98
40133--40184	5	9.6	5	85	10	59	17	5	1	75	1.10
40133--40185	11	4.8	11	77	13	56	16	5	1	75	1.08
40207--40251	18	2.5	17	80	20	56	15	6	2	75	1.11
52182--52214	15	2.2	15	94	0	57	9	69	15	6	1.34
55137--55335	100	2.0	100	100	0	398	49	4	11	35	1.57
55794--56039	5	48.6	5	89	9	376	59	0	0	40	0.97
57504--57605	31	3.2	30	69	24	73	40	22	17	19	1.92
57483--57612	66	2.0	66	85	0	179	36	20	21	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58862--58907	13	3.4	13	77	11	56	34	23	23	17	1.96
58875--58917	22	2.0	21	82	13	52	34	25	20	18	1.96
61083--61290	75	2.8	77	88	5	300	19	23	32	25	1.98
61879--61922	17	2.6	17	85	7	63	56	29	0	13	1.38
67737--67776	21	1.9	21	85	10	55	35	10	2	52	1.48
69698--69902	80	2.6	78	84	9	265	20	24	32	22	1.97
71622--71982	180	2.0	180	97	0	686	33	20	15	30	1.94
72320--72373	23	2.3	24	77	3	65	37	24	22	16	1.94
72401--72486	42	2.0	42	84	0	109	39	20	13	25	1.90
72444--72483	21	1.9	21	84	0	53	40	17	15	27	1.89
75823--75866	20	2.2	20	83	0	52	56	2	2	38	1.24
75865--75896	17	1.9	16	93	6	55	62	0	3	34	1.11
81410--81500	46	2.0	46	88	0	137	40	16	7	35	1.77
84357--84401	20	2.4	18	82	13	63	17	24	8	48	1.75
84363--84413	20	2.5	20	90	0	84	21	21	11	45	1.84
87647--87689	19	2.3	19	80	8	52	53	2	25	18	1.56
92878--92931	19	2.8	19	83	5	65	55	1	24	18	1.52
98203--98232	3	10.0	3	92	0	51	63	3	33	0	1.11
98998--99100	21	4.9	21	68	15	79	21	20	22	35	1.96
99004--99100	42	2.3	42	90	0	149	22	20	21	35	1.96
99192--99280	5	17.2	5	91	1	124	35	46	17	0	1.49
99935--100327	40	9.6	40	90	3	624	37	22	18	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99935--100327	82	4.8	82	95	0	682	37	22	18	21	1.94
100377--100429	21	2.5	21	96	0	97	18	20	32	28	1.97
104462--104517	21	2.7	21	88	0	85	25	21	23	30	1.99
104551--104590	21	1.9	21	89	0	62	25	30	20	25	1.99
106781--107036	32	8.1	32	91	2	351	34	19	17	27	1.95
112955--113007	18	2.9	18	85	0	79	28	30	20	20	1.98
115982--116006	9	2.8	9	100	0	50	8	0	12	80	0.92
118830--118927	34	2.9	34	92	0	160	36	6	4	53	1.45
125225--125252	3	9.3	3	100	0	56	67	0	0	32	0.91
125227--125265	12	3.2	13	89	7	55	69	0	2	28	1.02
125679--126325	182	3.6	182	88	0	929	44	13	15	26	1.84
128175--128232	24	2.5	22	78	13	64	39	0	8	51	1.33
128512--128541	15	2.0	15	93	0	51	20	13	50	16	1.78
128896--128934	18	2.2	18	100	0	78	56	0	38	5	1.22
130404--130453	19	2.6	19	93	0	82	30	2	10	58	1.42
130728--131528	198	4.0	200	85	5	973	36	16	15	31	1.90
130729--131408	198	3.4	198	90	2	988	37	17	15	30	1.91
131831--131883	15	3.5	15	84	0	70	18	43	3	33	1.68
136912--137435	200	2.6	196	81	6	567	38	13	16	31	1.87
137472--137530	23	2.6	23	88	0	91	33	18	6	40	1.77
140479--140516	20	1.9	20	88	0	58	34	23	21	21	1.97

Tables:   1

The End!