genome.fa.s2841.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002841.1 Hibiscus syriacus cultivar Beakdansim tig00005847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61405

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161--240	20	4.0	20	83	0	88	23	25	10	41	1.85
11865--11925	19	3.0	20	78	9	61	49	21	1	27	1.59
13228--13281	27	1.9	29	81	7	67	46	1	0	51	1.11
15360--15433	32	2.3	32	100	0	148	25	29	24	20	1.99
17624--17668	13	3.4	13	75	6	54	35	20	24	20	1.96
19755--19779	12	2.1	12	100	0	50	48	0	0	52	1.00
19829--19984	78	2.0	78	87	6	226	42	8	10	37	1.70
24323--24795	180	2.6	181	86	3	630	43	12	15	27	1.84
26906--26938	15	2.2	15	94	0	57	18	9	63	9	1.49
27020--27084	21	3.1	21	88	0	94	43	10	29	16	1.82
27118--27183	33	2.0	33	93	0	114	30	0	46	22	1.52
27371--27443	33	2.2	33	92	4	121	54	0	41	4	1.19
27391--27458	33	2.1	33	85	0	91	55	0	39	4	1.20
29008--29056	19	2.5	20	90	9	84	30	2	10	57	1.43
29291--29676	200	1.9	200	95	0	700	36	14	18	30	1.90
32052--32138	23	3.8	23	77	6	104	31	25	24	19	1.98
32154--32366	103	2.1	103	97	0	399	36	23	13	26	1.92
33357--33401	21	2.1	21	87	0	63	31	28	24	15	1.96
34077--34261	31	6.0	31	96	1	327	20	19	22	38	1.94
38058--38102	21	2.1	21	87	0	63	31	28	24	15	1.96
38778--38962	31	6.0	31	96	1	327	20	19	22	38	1.94
40752--40811	20	2.9	21	90	7	95	18	26	25	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42826--43541	184	3.9	184	94	0	1256	36	13	15	34	1.87
46164--46208	22	2.1	22	87	4	65	40	11	13	35	1.80
46667--46714	23	2.1	23	88	0	69	39	18	6	35	1.76

Tables:   1

The End!