Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002842.1 Hibiscus syriacus cultivar Beakdansim tig00005852_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65746

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1205--1242
18
2.1
18
85
14
51
34
0
0
65
0.93
1205--1242
10
4.1
9
86
13
51
34
0
0
65
0.93
1361--1387
2
13.5
2
100
0
54
48
0
0
51
1.00
1368--1492
67
1.9
66
80
12
150
31
3
3
62
1.27
1655--1709
19
2.8
19
77
20
60
23
9
1
65
1.31
2519--2570
27
1.9
27
96
0
95
40
7
0
51
1.30
2520--2575
16
3.8
16
66
24
50
41
7
0
51
1.29
6935--7091
50
3.1
51
82
8
185
37
3
35
22
1.73
7327--7397
25
2.8
25
77
10
81
45
2
2
49
1.31
7357--7476
31
4.0
30
82
7
154
44
6
5
44
1.52
7357--7473
63
1.9
60
85
5
162
43
6
5
44
1.53
7551--7589
2
20.0
2
94
5
71
48
0
0
51
1.00
7627--7674
15
3.0
15
80
16
60
47
6
6
39
1.54
7701--7840
31
4.7
30
69
13
101
44
5
5
45
1.47
7701--7745
11
4.3
11
86
11
67
40
2
8
48
1.47
7678--7736
20
3.0
20
80
7
75
40
3
8
47
1.51
7773--7840
2
33.0
2
77
11
66
47
2
1
48
1.26
7773--7839
27
2.5
27
82
4
82
47
2
1
47
1.26
7551--8097
252
2.2
253
90
7
889
45
5
5
44
1.48
7961--8096
2
68.0
2
67
21
63
46
4
2
46
1.38
7953--8002
11
4.5
11
87
5
73
42
2
8
48
1.44
7883--8053
22
7.9
22
71
12
70
46
5
5
42
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8042--8084
22
1.9
23
90
4
70
41
2
2
53
1.26
7898--8096
11
18.4
11
66
19
55
47
5
3
44
1.40
12049--12117
12
5.5
12
77
8
75
44
0
1
53
1.09
27863--27977
60
1.9
60
92
3
196
41
17
13
27
1.86
29857--29910
20
2.7
20
100
0
108
55
18
5
20
1.62
34294--34459
60
2.8
60
83
3
192
37
6
24
32
1.80
37158--37196
18
2.2
18
86
13
55
48
10
12
28
1.74
43682--43794
38
3.0
38
84
5
147
41
15
17
24
1.89
46911--46969
29
2.0
29
90
0
91
25
16
10
47
1.78
48791--48848
29
2.0
29
96
0
107
27
15
12
44
1.82
50674--50732
29
2.0
29
96
0
109
23
15
11
49
1.77
55793--55852
29
2.1
29
96
0
111
51
13
11
23
1.73
62698--62755
20
2.9
20
97
0
107
20
24
24
31
1.98

Tables:   1

The End!