genome.fa.s2843.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002843.1 Hibiscus syriacus cultivar Beakdansim tig00005854_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69030

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3203--3280	39	2.0	39	92	0	129	42	17	8	30	1.81
3834--3890	16	3.6	16	90	0	87	47	3	12	36	1.58
3834--3899	32	2.0	33	88	5	98	45	3	12	39	1.57
5253--5297	22	2.0	22	100	0	90	40	13	20	26	1.89
9551--9607	23	2.5	24	94	5	100	59	0	10	29	1.31
9563--9620	23	2.4	23	85	8	71	62	0	12	25	1.30
13628--13668	20	2.0	20	90	0	64	12	26	26	34	1.92
13638--13676	20	2.0	20	89	0	60	15	20	25	38	1.92
14046--14074	8	3.6	8	100	0	58	34	0	0	65	0.93
14192--14249	21	2.8	20	70	14	55	32	18	20	27	1.97
14175--15344	232	5.0	231	80	7	1287	33	16	15	33	1.91
14506--14557	20	2.6	20	90	0	86	36	26	15	21	1.93
27904--27952	20	2.4	22	83	13	68	36	0	2	61	1.08
32118--32152	6	5.5	6	87	12	52	14	17	14	54	1.72
37209--37433	38	6.2	37	79	17	258	30	14	12	42	1.83
37276--37342	33	2.1	33	88	8	102	32	13	13	40	1.83
37205--37406	110	1.8	109	91	5	336	30	15	12	41	1.85
37333--37399	22	3.3	21	65	26	54	29	13	16	40	1.87
37209--37433	72	3.1	75	79	16	276	30	14	12	42	1.83
37456--37625	36	4.9	36	77	7	188	25	20	12	41	1.88
37456--37667	68	3.1	67	85	6	261	25	19	13	40	1.89
37624--37885	73	3.6	71	80	5	272	27	19	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37769--37885	37	3.2	37	66	2	92	29	18	13	38	1.89
38503--38568	20	3.3	20	65	12	55	40	12	21	25	1.88
38287--38674	112	3.6	106	80	9	389	38	15	20	26	1.91
42542--42582	17	2.4	17	91	0	64	34	41	4	19	1.73
44675--44731	3	19.0	3	92	0	69	24	0	42	33	1.55
47193--47306	60	1.9	60	81	0	138	25	21	25	28	1.99
50024--50153	25	5.3	24	76	13	106	38	14	1	45	1.55
50024--50150	47	2.6	49	78	13	136	37	14	1	46	1.55
57948--57986	15	2.6	15	84	11	53	17	12	7	61	1.54
66438--66472	3	11.7	3	88	11	54	0	31	0	68	0.90
68786--68826	20	2.0	20	90	0	64	46	9	17	26	1.79

Tables:   1

The End!