Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002844.1 Hibiscus syriacus cultivar Beakdansim tig00005856_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1090609
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 5
Found at i:931155 original size:18 final size:19
Alignment explanation
Indices: 931132--931169 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
931122 AATATATAAA
931132 AAAACAGA-AAAATAAATG
1 AAAACAGATAAAATAAATG
*
931150 AAAACATATAAAATAAATG
1 AAAACAGATAAAATAAATG
931169 A
1 A
931170 CTAAATTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.71, C:0.05, G:0.08, T:0.16
Consensus pattern (19 bp):
AAAACAGATAAAATAAATG
Found at i:932504 original size:3 final size:3
Alignment explanation
Indices: 932496--932539 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
932486 AATATATATT
*
932496 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
932540 TGGGTAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:933138 original size:116 final size:113
Alignment explanation
Indices: 932856--933523 Score: 864
Period size: 113 Copynumber: 5.9 Consensus size: 113
932846 GATAGAATTA
* * *
932856 TTGAACAAGTTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTTTTCTCATTAT
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTAT
* * * * * *
932921 GAACTCTACTTGGCAATGTTGATCCATCCAATGATGAATTC--A-AAAAGA
63 GAACTCTACCTGGCAAAGATAATCCATCAAATGATGAATTCAAACAAAAGG
*
932969 TTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTAT
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTAT
* * * *
933034 GAACTCTACCTGGCAACGTTGATCCATCAAATGATGAATTCAAACAAAAAG
63 GAACTCTACCTGGCAAAGATAATCCATCAAATGATGAATTCAAACAAAAGG
* * *
933085 TTGAACAAGTTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAAGAGTTCTTCTTATTAT
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTAT
* * * *
933150 GAAC-CTTCTCTGGCAAAAATAATCCATCAAGTGATGAATTCAGACAAAAGG
63 GAACTCTAC-CTGGCAAAGATAATCCATCAAATGATGAATTCAAACAAAAGG
933201 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* ** * * * *
933266 CTTTTTCTGGAAAAGCTAATCCATCAATTTGATGAATTCAAATAAAAGG
66 CTCTACCTGGCAAAGATAATCCATCAA-ATGATGAATTCAAACAAAAGG
933315 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* * *
933380 CT-T-CTCTGGCAAAAATAATCCATCAAGTGATGAATTCAAATAAAAGG
66 CTCTAC-CTGGCAAAGATAATCCATCAAATGATGAATTCAAACAAAAGG
933427 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
1 TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
* * *
933492 CT-TTCTCTGGAAAAAATAATCCATCAAATGAT
66 CTCTAC-CTGGCAAAGATAATCCATCAAATGAT
933524 AGATTTGAAT
Statistics
Matches: 511, Mismatches: 36, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
112 88 0.17
113 183 0.36
114 87 0.17
115 4 0.01
116 149 0.29
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (113 bp):
TTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAA
CTCTACCTGGCAAAGATAATCCATCAAATGATGAATTCAAACAAAAGG
Found at i:934387 original size:82 final size:83
Alignment explanation
Indices: 934249--935133 Score: 1519
Period size: 82 Copynumber: 10.8 Consensus size: 83
934239 TCTGTAGTTC
934249 CTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTC
1 CTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTC
934314 TAAATTCAATGATTGGTT
66 TAAATTCAATGATTGGTT
934332 -TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT-
1 CTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTC
* *
934395 T-CATTTAATGATTGGTT
66 TAAATTCAATGATTGGTT
934412 CTATCC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
1 CTA-CCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
934476 CTAAATTCAATGATTGGTT
65 CTAAATTCAATGATTGGTT
*
934495 CTGTCC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
1 CT-ACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
934559 CTAAATTCAATGATTGGTT
65 CTAAATTCAATGATTGGTT
* *
934578 CTGTCC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATACTATTGGCAAATTCATCTT
1 CT-ACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
934642 CTAAATTCAATGATTGGTT
65 CTAAATTCAATGATTGGTT
934661 -TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTC
1 CTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTC
*
934725 TAAGTTCAATGATTGGTT
66 TAAATTCAATGATTGGTT
*
934743 CTGTCC-AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
1 CT-ACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
934807 CTAAATTCAATGATTGGTT
65 CTAAATTCAATGATTGGTT
934826 -TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTC
1 CTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTC
934890 TAAATTCAATGATTGGTT
66 TAAATTCAATGATTGGTT
934908 -TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT-
1 CTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTC
* * *
934971 T-CATTTAATGTTTGGTT
66 TAAATTCAATGATTGGTT
* *
934988 CTGTCC-AACCAGATCATATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
1 CT-ACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
935052 CTAAATTCAATGATTGGTT
65 CTAAATTCAATGATTGGTT
935071 -TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
1 CTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTT
935134 TCATTTAATG
Statistics
Matches: 766, Mismatches: 22, Indels: 29
0.94 0.03 0.04
Matches are distributed among these distances:
80 27 0.04
81 126 0.16
82 344 0.45
83 267 0.35
84 2 0.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (83 bp):
CTACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTC
TAAATTCAATGATTGGTT
Found at i:936290 original size:15 final size:15
Alignment explanation
Indices: 936270--936321 Score: 61
Period size: 15 Copynumber: 3.4 Consensus size: 15
936260 CTTGACCCCC
936270 TTTTTTTTCTCTCTT
1 TTTTTTTTCTCTCTT
*
936285 TTTTTTTT-TCTTTCT
1 TTTTTTTTCTCTCT-T
*
936300 TTTTTTTTCTTTTCTT
1 TTTTTTTTC-TCTCTT
936316 TTTTTT
1 TTTTTT
936322 CTTTTCTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
14 4 0.13
15 17 0.55
16 7 0.23
17 3 0.10
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (15 bp):
TTTTTTTTCTCTCTT
Found at i:936292 original size:19 final size:18
Alignment explanation
Indices: 936270--936333 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
936260 CTTGACCCCC
*
936270 TTTTTTTTC-TC-TCTTT
1 TTTTTTTTCTTCTTTTTT
936286 TTTTTTTTCTTTCTTTTTT
1 TTTTTTTTC-TTCTTTTTT
*
936305 TTTCTTTTCTT-TTTTTT
1 TTTTTTTTCTTCTTTTTT
*
936322 CTTTTCTTTCTT
1 -TTTTTTTTCTT
936334 TTCAAGCATA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
16 9 0.22
17 6 0.15
18 13 0.32
19 12 0.30
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTTTTTTCTTCTTTTTT
Found at i:936320 original size:33 final size:32
Alignment explanation
Indices: 936270--936335 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
936260 CTTGACCCCC
*
936270 TTTTTTTTCTCTCTTTTTTTTTTTCTTTCTTT
1 TTTTTTTTCTCTCTTTTTTCTTTTCTTTCTTT
* *
936302 TTTTTTCTTTTCTTTTTTTTCTTTTCTTTCTTT
1 TTTTTT-TTCTCTCTTTTTTCTTTTCTTTCTTT
936335 T
1 T
936336 CAAGCATAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 6 0.20
33 24 0.80
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (32 bp):
TTTTTTTTCTCTCTTTTTTCTTTTCTTTCTTT
Found at i:936327 original size:5 final size:5
Alignment explanation
Indices: 936285--936336 Score: 65
Period size: 5 Copynumber: 11.0 Consensus size: 5
936275 TTTCTCTCTT
* *
936285 TTTTT TTTTC -TTTC TTTTT TTTTC TTTTC TTTT- TTTTC TTTTC -TTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC
936332 TTTTC
1 TTTTC
936337 AAGCATAATA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
4 12 0.29
5 29 0.71
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (5 bp):
TTTTC
Found at i:936336 original size:14 final size:14
Alignment explanation
Indices: 936269--936336 Score: 84
Period size: 14 Copynumber: 4.7 Consensus size: 14
936259 CCTTGACCCC
936269 CTTTTTTTTCTCTCTT
1 CTTTTTTTTCT-T-TT
*
936285 TTTTTTTTTC-TTT
1 CTTTTTTTTCTTTT
936298 CTTTTTTTTTCTTTT
1 C-TTTTTTTTCTTTT
936313 CTTTTTTTTCTTTT
1 CTTTTTTTTCTTTT
*
936327 CTTTCTTTTC
1 CTTTTTTTTC
936337 AAGCATAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
13 2 0.04
14 32 0.68
15 4 0.09
16 9 0.19
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (14 bp):
CTTTTTTTTCTTTT
Found at i:947020 original size:18 final size:17
Alignment explanation
Indices: 946972--947022 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
946962 AAATACTTGC
*
946972 AAATAAAATAAAACATAT
1 AAAT-AAATAAAAAATAT
*
946990 AAAT-ATTATAAAAATAAT
1 AAATAAATA-AAAAAT-AT
947008 AAATAAATAAAAAAT
1 AAATAAATAAAAAAT
947023 TTGACAAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
16 3 0.11
17 5 0.19
18 16 0.59
19 3 0.11
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (17 bp):
AAATAAATAAAAAATAT
Found at i:947813 original size:18 final size:19
Alignment explanation
Indices: 947790--947827 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
947780 ATATATAAAA
947790 AAAACAGA-AAAATAAATG
1 AAAACAGATAAAATAAATG
*
947808 AAAACATATAAAATAAATG
1 AAAACAGATAAAATAAATG
947827 A
1 A
947828 CTAAATTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.71, C:0.05, G:0.08, T:0.16
Consensus pattern (19 bp):
AAAACAGATAAAATAAATG
Found at i:948039 original size:29 final size:27
Alignment explanation
Indices: 947978--948032 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
947968 ATTAAAAATA
*
947978 TAAACTAAGGATTAAAATATTATTTAT
1 TAAATTAAGGATTAAAATATTATTTAT
*
948005 TAAAATTAAGGGATT-AAATGTTATTTAT
1 T-AAATTAA-GGATTAAAATATTATTTAT
948033 CCTAAATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 1 0.04
28 18 0.75
29 5 0.21
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.42
Consensus pattern (27 bp):
TAAATTAAGGATTAAAATATTATTTAT
Found at i:949143 original size:3 final size:3
Alignment explanation
Indices: 949137--949198 Score: 97
Period size: 3 Copynumber: 20.7 Consensus size: 3
949127 ATTATATATT
* * *
949137 TAA TAA TAT TTA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
949185 TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TA
949199 TGGGTAAAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:951990 original size:13 final size:13
Alignment explanation
Indices: 951972--951998 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
951962 TGTTAGACAG
951972 TATTATAAGTTAA
1 TATTATAAGTTAA
951985 TATTATAAGTTAA
1 TATTATAAGTTAA
951998 T
1 T
951999 GTCCACGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (13 bp):
TATTATAAGTTAA
Found at i:962857 original size:11 final size:11
Alignment explanation
Indices: 962841--962866 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
962831 ATTCATTGAA
962841 ATTTCTCAAAG
1 ATTTCTCAAAG
962852 ATTTCTCAAAG
1 ATTTCTCAAAG
962863 ATTT
1 ATTT
962867 GACAAAGACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (11 bp):
ATTTCTCAAAG
Found at i:966629 original size:23 final size:23
Alignment explanation
Indices: 966603--966652 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
966593 TTAAGAGTGT
966603 TGTTGCTAGTTAGTTAAAGAAGC
1 TGTTGCTAGTTAGTTAAAGAAGC
*
966626 TGTTGCTAGTTAGTTAAAGAAGT
1 TGTTGCTAGTTAGTTAAAGAAGC
966649 TGTT
1 TGTT
966653 AGCTGGCGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.28, C:0.06, G:0.26, T:0.40
Consensus pattern (23 bp):
TGTTGCTAGTTAGTTAAAGAAGC
Found at i:969806 original size:27 final size:27
Alignment explanation
Indices: 969767--969832 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
969757 ATACACTCTA
**
969767 CACCACCTGGGAGTGTTGCTGAAGAAT
1 CACCACCTGGGAGTGGGGCTGAAGAAT
* *
969794 CACCACCTTGGAGTGGGGTTGAAGAAT
1 CACCACCTGGGAGTGGGGCTGAAGAAT
*
969821 CATCACCTGGGA
1 CACCACCTGGGA
969833 ATAATGCTGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (27 bp):
CACCACCTGGGAGTGGGGCTGAAGAAT
Found at i:971772 original size:23 final size:23
Alignment explanation
Indices: 971746--971797 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
971736 TGTTAAGAGT
971746 GTTGTTGCTAGTTAGTTAAAGAA
1 GTTGTTGCTAGTTAGTTAAAGAA
971769 GTTGTTGCTAGTTAGTTAAAGAA
1 GTTGTTGCTAGTTAGTTAAAGAA
971792 GTTGTT
1 GTTGTT
971798 AGCTGGCGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.27, C:0.04, G:0.27, T:0.42
Consensus pattern (23 bp):
GTTGTTGCTAGTTAGTTAAAGAA
Found at i:975317 original size:2 final size:2
Alignment explanation
Indices: 975310--975379 Score: 140
Period size: 2 Copynumber: 35.0 Consensus size: 2
975300 TTGGGGTAAT
975310 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
975352 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
975380 CACTTTAATA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:975626 original size:30 final size:30
Alignment explanation
Indices: 975590--975683 Score: 91
Period size: 30 Copynumber: 3.1 Consensus size: 30
975580 TATTGTATGG
* *
975590 AAGACGTCTAAAAGATTTGACGATTTTTGA
1 AAGACGTCTAAAAGAGTCGACGATTTTTGA
* *
975620 AAGACGTTTAGAAGAGTCGACGATTTTTGA
1 AAGACGTCTAAAAGAGTCGACGATTTTTGA
* * * * *
975650 AAAACG-CTTACAATACTCGACGACTTTTGA
1 AAGACGTC-TAAAAGAGTCGACGATTTTTGA
975680 AAGA
1 AAGA
975684 TTCATGAGAA
Statistics
Matches: 52, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (30 bp):
AAGACGTCTAAAAGAGTCGACGATTTTTGA
Found at i:977082 original size:2 final size:2
Alignment explanation
Indices: 977077--977121 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
977067 TTTGAAGAAG
977077 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
977118 TA TA
1 TA TA
977122 GAAAATTGTT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:977262 original size:14 final size:14
Alignment explanation
Indices: 977245--977283 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
977235 AAATATTTAA
977245 ATAAAATTTAAATT
1 ATAAAATTTAAATT
**
977259 ATAAAATAAAAATT
1 ATAAAATTTAAATT
977273 -TAAAATTTAAA
1 ATAAAATTTAAA
977284 AAATTTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATAAAATTTAAATT
Found at i:977283 original size:20 final size:18
Alignment explanation
Indices: 977239--977284 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 18
977229 GAATAAAAAT
977239 ATTT-AAATAAAATTTAA
1 ATTTAAAATAAAATTTAA
977256 ATTATAAAATAAAAATTTAAA
1 ATT-TAAAAT-AAAATTT-AA
977277 ATTTAAAA
1 ATTTAAAA
977285 AATTTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 3 0.12
18 1 0.04
19 4 0.16
20 12 0.48
21 5 0.20
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
ATTTAAAATAAAATTTAA
Found at i:980569 original size:100 final size:100
Alignment explanation
Indices: 980386--980585 Score: 300
Period size: 100 Copynumber: 2.0 Consensus size: 100
980376 CAGAGGTAAT
*
980386 ATTTCTATCACATATACTTTTAGTATTTTTGTTCACAAGGTTAAAACAGTAAAAAAATCTTATTT
1 ATTTCTATCACATATACTTTTAGTATTTTTCTTCACAAGGTTAAAACAGTAAAAAAATCTTATTT
*
980451 ATTTATTTATTTTGTTTTTAAATATACTTAATAAA
66 ATTTATTTATTATGTTTTTAAATATACTTAATAAA
*
980486 ATTTCTATCACATATACTTTTAGTATTTTTTTTTCTTCATAAGGTTAAAACAGTAAAAAAATCTT
1 ATTTCTATCACATATACTTTTAGTA----TTTTTCTTCACAAGGTTAAAACAGTAAAAAAATCTT
*
980551 ATTTA-TT-TTT-TTAT-TTTTTAAATATGCTTAATAAA
62 ATTTATTTATTTATTATGTTTTTAAATATACTTAATAAA
980586 TTAAGTATTA
Statistics
Matches: 92, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
100 45 0.49
101 3 0.03
102 3 0.03
103 2 0.02
104 39 0.42
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (100 bp):
ATTTCTATCACATATACTTTTAGTATTTTTCTTCACAAGGTTAAAACAGTAAAAAAATCTTATTT
ATTTATTTATTATGTTTTTAAATATACTTAATAAA
Found at i:987983 original size:2 final size:2
Alignment explanation
Indices: 987978--988004 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
987968 ATGTATGCAC
987978 GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT G
988005 AGAGTGAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (2 bp):
GT
Found at i:1005731 original size:39 final size:39
Alignment explanation
Indices: 1005657--1005773 Score: 103
Period size: 39 Copynumber: 3.0 Consensus size: 39
1005647 TCCAATAATA
* * * * * *
1005657 CCTAAGCACTAAGCTGATGAGTTTGCAGTACGGACTTAC
1 CCTAAACACAAAGCTGAGGAGCTTGCGGTAAGGACTTAC
* *
1005696 CCTAAACACAAA-ATCGAGGAG-TCTGCGGTAAGGACTTAT
1 CCTAAACACAAAGCT-GAGGAGCT-TGCGGTAAGGACTTAC
* * *
1005735 CTTGAGCACAAAGCTGAGGAGCTTGCGGTAAGGACTTAC
1 CCTAAACACAAAGCTGAGGAGCTTGCGGTAAGGACTTAC
1005774 AAGTCATAGA
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
38 2 0.03
39 58 0.94
40 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (39 bp):
CCTAAACACAAAGCTGAGGAGCTTGCGGTAAGGACTTAC
Found at i:1019711 original size:2 final size:2
Alignment explanation
Indices: 1019701--1019741 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
1019691 AAACATAATG
*
1019701 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1019741 A
1 A
1019742 ATAACGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 33 0.94
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:1020535 original size:35 final size:36
Alignment explanation
Indices: 1020465--1020564 Score: 130
Period size: 35 Copynumber: 2.8 Consensus size: 36
1020455 GTGCTTGTGG
* * *
1020465 ATCCTATCTTTAGGAGTTTAAAACATAGCAAAATTCT
1 ATCCTAT-TTTAGGAGTTTGAATCCTAGCAAAATTCT
*
1020502 ATCCTATTTTAGGAG-TTGAATCCTAGCAGAATTCT
1 ATCCTATTTTAGGAGTTTGAATCCTAGCAAAATTCT
*
1020537 ATCCTATTTTTGAGAGTTTGAATCCTAG
1 ATCCTATTTTAG-GAGTTTGAATCCTAG
1020565 TAGGACGAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
35 27 0.48
36 11 0.20
37 18 0.32
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (36 bp):
ATCCTATTTTAGGAGTTTGAATCCTAGCAAAATTCT
Found at i:1021335 original size:106 final size:103
Alignment explanation
Indices: 1021025--1021895 Score: 806
Period size: 98 Copynumber: 8.4 Consensus size: 103
1021015 AATATTGTTC
* * ** *
1021025 CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATTGGTTCTGGAACCGGGAAATTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT-GAA--ATGAAAATGTTTGTTGACA
** * * * *
1021090 GTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCT
63 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * *
1021131 CGAGTCTAATATCCTTCGTTGTGAAGTTGAAATTGACTCTG-AACG-AAAT-CTTGTTGACAATC
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATGAAAATGTTTGTTGACAACC
* *
1021193 AGCCGTCCATTCGTTATGAAGTTGAACTTGTGTTGTCT
66 AGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
*
1021231 CGAGTCCAATATCCTTCGCTGCGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGTTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAA--TG-AAAATGTTTGTTGACA
*
1021296 ACCAGCCATCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
63 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * ** *
1021337 CGAGTGGCACGATATCCTCCG-TCGTGGAGTTGAAA-TCGCGGATGAAACTGAAAAGTTGTTCGT
1 CGAGT--C-CAATATCCTTCGCT-GTGAAGTTGAAATTGGC-TCTGAAA-TGAAAA--TGTTTGT
1021400 TGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
58 TGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * *
1021446 C-AGGTAGCACGATATCCTCCG-TCGTGGAGTTGAAATCGGCTCTGGAATTGGGAAATTGTTTGT
1 CGA-GT--C-CAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCT-GAAAT--GAAAATGTTTGT
1021509 TGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
58 TGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * **
1021555 CGAATCCAATATCCTTCGCTGTGAAGTTGAGATTGGCTCCGAAAT-----TGCTTGTCGACAGTC
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATGAAAATGTTTGTTGACAACC
* * * *
1021615 AGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGATGTCT
66 AGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * **
1021653 TGGGTCCAATATCCTTCGCTGTGAAGTTGAGATTGGCTCCGAAAT-----TGTTTGTCGACAGTC
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATGAAAATGTTTGTTGACAACC
* * * *
1021713 AGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGATGTCT
66 AGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * *
1021751 TGGGTCCAATATCCTTCGCCGTGAAGTTGAAATTGGCCCTAAAACTGGGAAAT-TATTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAA-T-GAAAATGT-TTGTTGACA
1021815 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
63 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * *
1021856 CGAGTGCAATATCCTTCGCTGTGAAGTCGAAATTGACTCT
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT
1021896 AGCTAAAACC
Statistics
Matches: 654, Mismatches: 83, Indels: 57
0.82 0.10 0.07
Matches are distributed among these distances:
98 178 0.27
99 1 0.00
100 80 0.12
101 5 0.01
102 1 0.00
103 1 0.00
104 2 0.00
105 86 0.13
106 112 0.17
107 6 0.01
108 8 0.01
109 164 0.25
110 6 0.01
111 4 0.01
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (103 bp):
CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATGAAAATGTTTGTTGACAACC
AGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
Found at i:1021518 original size:218 final size:205
Alignment explanation
Indices: 1021025--1021895 Score: 687
Period size: 206 Copynumber: 4.2 Consensus size: 205
1021015 AATATTGTTC
* * **
1021025 CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATTGGTTCTGGAACCGGGAAATTGTTTGTTGACA
1 CGAGTCCAATATCCTCCGC-GTGGAGTTGAAATTGGCTCTGGAATTGGGAAATTGTTTGTTGACA
** * * * * * *
1021090 GTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTCGAGTCTAATATCCTTCGTTGTGA
65 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCTAATATCCTCCGTCGTGA
* ** *
1021155 AGTTGAAATTGACTCTGAACGAAATCTTGTTGACAATCAGCCGTCCATTCGTTATGAAGTTGAAC
130 AGTTGAAATCGACGATGAACGAAATCTTGTTGACAACCAGCCGTCCATTCGTTATGAAGTTGAAC
1021220 TTGTGTTGTCT
195 TTGTGTTGTCT
* * * * *
1021231 CGAGTCCAATATCCTTCGC-TGCGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGTTTGTTGAC
1 CGAGTCCAATATCCTCCGCGTG-G-AGTTGAAATTGGCTCTGGAATTGGGAAATTGTTTGTTGAC
*
1021295 AACCAGCCATCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGGC-ACGATATCCTCCGT
64 AACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGT--CTA--ATATCCTCCGT
* * *
1021359 CGTGGAGTTGAAATCG-CGGATGAAACTGAAAAGTTGTTCGTTGACAACCAGCCGTCCCTTCGTT
125 CGTGAAGTTGAAATCGAC-GATG-AAC-G-AAA--TCTT-GTTGACAACCAGCCGTCCATTCGTT
*
1021423 GTGAAGTTGAACTTGTGTTGTCT
183 ATGAAGTTGAACTTGTGTTGTCT
* *
1021446 C-AGGTAGCACGATATCCTCCGTCGTGGAGTTGAAATCGGCTCTGGAATTGGGAAATTGTTTGTT
1 CGA-GT--C-CAATATCCTCCG-CGTGGAGTTGAAATTGGCTCTGGAATTGGGAAATTGTTTGTT
* * *
1021510 GACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAATCCAATATCCTTCG-C
61 GACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCTAATATCCTCCGTC
* * * * * ** * * * *
1021574 TGTGAAGTTGAGATTG--GCT--CCGAAATTGCTTGTCGACAGTCAGCCGCCCCTTCGCTGTGAA
126 -GTGAAGTTGAAATCGACGATGAACGAAA-T-CTTGTTGACAACCAGCCGTCCATTCGTTATGAA
* *
1021635 GTTGAGCTTGTGATGTCT
188 GTTGAACTTGTGTTGTCT
* * * * * * *
1021653 TGGGTCCAATATCCTTCGCTGTGAAGTTGAGATTGGCTC--------CGAAATTGTTTGTCGACA
1 CGAGTCCAATATCCTCCGC-GTGGAGTTGAAATTGGCTCTGGAATTGGGAAATTGTTTGTTGACA
** * * * * * * * * *
1021710 GTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGATGTCTTGGGTCCAATATCCTTCGCCGTGA
65 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCTAATATCCTCCGTCGTGA
* * ** * * * *
1021775 AGTTGAAATTGGCCCTAAAACTGGGAAATTATTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGT
130 AGTTGAAATCGACGAT-GAAC---GAAA-TCTTGTTGACAACCAGCCGTCCATTCGTTATGAAGT
1021840 TGAACTTGTGTTGTCT
190 TGAACTTGTGTTGTCT
* * * * *
1021856 CGAGTGCAATATCCTTCGCTGTGAAGTCGAAATTGACTCT
1 CGAGTCCAATATCCTCCGC-GTGGAGTTGAAATTGGCTCT
1021896 AGCTAAAACC
Statistics
Matches: 547, Mismatches: 84, Indels: 70
0.78 0.12 0.10
Matches are distributed among these distances:
196 80 0.15
197 1 0.00
198 2 0.00
201 1 0.00
203 77 0.14
204 34 0.06
205 1 0.00
206 91 0.17
207 46 0.08
208 7 0.01
209 26 0.05
210 4 0.01
211 1 0.00
212 3 0.01
213 2 0.00
214 5 0.01
215 69 0.13
216 1 0.00
217 2 0.00
218 90 0.16
219 2 0.00
220 2 0.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (205 bp):
CGAGTCCAATATCCTCCGCGTGGAGTTGAAATTGGCTCTGGAATTGGGAAATTGTTTGTTGACAA
CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCTAATATCCTCCGTCGTGAA
GTTGAAATCGACGATGAACGAAATCTTGTTGACAACCAGCCGTCCATTCGTTATGAAGTTGAACT
TGTGTTGTCT
Found at i:1021631 original size:55 final size:55
Alignment explanation
Indices: 1021567--1021738 Score: 176
Period size: 55 Copynumber: 3.3 Consensus size: 55
1021557 AATCCAATAT
1021567 CCTTCGCTGTGAAGTTGAGATTGGCTCCGAAATTGCTTGTCGACAGTCAGCCGCC
1 CCTTCGCTGTGAAGTTGAGATTGGCTCCGAAATTGCTTGTCGACAGTCAGCCGCC
* * *
1021622 CCTTCGCTGTGAAGTTGAGCTT-G-T--G--A-TGTCTTGGGTC--CAAT-A-----T
1 CCTTCGCTGTGAAGTTGAGATTGGCTCCGAAATTG-CTT--GTCGACAGTCAGCCGCC
*
1021665 CCTTCGCTGTGAAGTTGAGATTGGCTCCGAAATTGTTTGTCGACAGTCAGCCGCC
1 CCTTCGCTGTGAAGTTGAGATTGGCTCCGAAATTGCTTGTCGACAGTCAGCCGCC
1021720 CCTTCGCTGTGAAGTTGAG
1 CCTTCGCTGTGAAGTTGAG
1021739 CTTGTGATGT
Statistics
Matches: 92, Mismatches: 7, Indels: 36
0.68 0.05 0.27
Matches are distributed among these distances:
43 21 0.23
44 1 0.01
45 1 0.01
47 4 0.04
48 3 0.03
49 13 0.14
50 3 0.03
51 4 0.04
53 1 0.01
54 1 0.01
55 40 0.43
ACGTcount: A:0.17, C:0.24, G:0.28, T:0.31
Consensus pattern (55 bp):
CCTTCGCTGTGAAGTTGAGATTGGCTCCGAAATTGCTTGTCGACAGTCAGCCGCC
Found at i:1021670 original size:43 final size:43
Alignment explanation
Indices: 1021622--1021780 Score: 126
Period size: 43 Copynumber: 3.4 Consensus size: 43
1021612 GTCAGCCGCC
1021622 CCTTCGCTGTGAAGTTGAGCTTGTGATGTCTTGGGTCCAATAT
1 CCTTCGCTGTGAAGTTGAGCTTGTGATGTCTTGGGTCCAATAT
* * *
1021665 CCTTCGCTGTGAAGTTGAGATTGGCTCCGAAATTGT-TT--GTCGACAGTCAGCCGCC
1 CCTTCGCTGTGAAGTTGAGCTT-G-T--G--A-TGTCTTGGGTC--CAAT-A-----T
1021720 CCTTCGCTGTGAAGTTGAGCTTGTGATGTCTTGGGTCCAATAT
1 CCTTCGCTGTGAAGTTGAGCTTGTGATGTCTTGGGTCCAATAT
*
1021763 CCTTCGCCGTGAAGTTGA
1 CCTTCGCTGTGAAGTTGA
1021781 AATTGGCCCT
Statistics
Matches: 91, Mismatches: 7, Indels: 36
0.68 0.05 0.27
Matches are distributed among these distances:
43 38 0.42
44 1 0.01
45 1 0.01
47 4 0.04
48 4 0.04
49 12 0.13
50 4 0.04
51 4 0.04
53 1 0.01
54 1 0.01
55 21 0.23
ACGTcount: A:0.17, C:0.22, G:0.28, T:0.33
Consensus pattern (43 bp):
CCTTCGCTGTGAAGTTGAGCTTGTGATGTCTTGGGTCCAATAT
Found at i:1022524 original size:65 final size:65
Alignment explanation
Indices: 1022420--1022585 Score: 271
Period size: 65 Copynumber: 2.6 Consensus size: 65
1022410 GACAAAATTT
*
1022420 TGTTTCAAGAGAAACTGTCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGAGAAACTATCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
1022485 TGTTTCAAGAGAAACTATCTTAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGAGAAACTATCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* * *
1022550 TGTTTCAAGAGAAATTGTCTCAATG-GAGACAAAATT
1 TGTTTCAAGAGAAACTATCTCAA-GAGAGACGAAATT
1022586 TTGTTTCGAG
Statistics
Matches: 94, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
65 93 0.99
66 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (65 bp):
TGTTTCAAGAGAAACTATCTCAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
Found at i:1022592 original size:102 final size:102
Alignment explanation
Indices: 1022485--1022923 Score: 711
Period size: 102 Copynumber: 4.3 Consensus size: 102
1022475 TCAATGTTTA
* * *
1022485 TGTTTCAAGAGAAACTATCTTAAGAGAGACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
1022550 TGTTTCAAGAGAAATTGTCTCAATGGAGACAAAATTT
66 TGTTTCAAGAGAAACTGTCTCAATGGAGACAAAATTT
*
1022587 TGTTTCGAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
1022652 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
66 TGTTTCAAGAGAAACTGTCTCAATGGAGACAAAATTT
* *
1022689 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATATTTCCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
**
1022754 TGTTTCAAGAGAAACTGTCTCAATGGAGACGGAATTT
66 TGTTTCAAGAGAAACTGTCTCAATGGAGACAAAATTT
*
1022791 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACTCATTTCAAGGGAAATGTTTTCAATGTTTA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* * *
1022856 TGTTTCATGAGAAACTGTCTCAA-GG-GAGAAATTTT
66 TGTTTCAAGAGAAACTGTCTCAATGGAGACAAAATTT
* * *
1022891 TTTTTAAAGGGAAACTGTCTCAAGAGAGACAAA
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAA
1022924 GTTTGTTTCA
Statistics
Matches: 314, Mismatches: 23, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
100 36 0.11
101 2 0.01
102 276 0.88
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.31
Consensus pattern (102 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
TGTTTCAAGAGAAACTGTCTCAATGGAGACAAAATTT
Found at i:1022608 original size:37 final size:36
Alignment explanation
Indices: 1022550--1022824 Score: 156
Period size: 37 Copynumber: 7.9 Consensus size: 36
1022540 TCAATGTTTA
* * *
1022550 TGTTTCAAGAGAAATTGTCTCAATGGAGACAAAATTT
1 TGTTTCAAGGGAAACTATCTCAA-GGAGACAAAATTT
*
1022587 TGTTTCGAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTATCTCAAG-GAGACAAAATTT
** * * *
1022623 CATTTCAAGGGAAA-TGTTTTCAA--TG------TTT
1 TGTTTCAAGGGAAACT-ATCTCAAGGAGACAAAATTT
* *
1022651 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGGGAAACTATCTCAA-GGAGACAAAATTT
1022689 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTATCTCAAG-GAGACAAAATTT
** * **
1022725 CATTTCAAGGGAAA-TATTTC-------CAATGTTT
1 TGTTTCAAGGGAAACTATCTCAAGGAGACAAAATTT
* * **
1022753 ATGTTTCAAGAGAAACTGTCTCAATGGAGACGGAATTT
1 -TGTTTCAAGGGAAACTATCTCAA-GGAGACAAAATTT
1022791 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA
1 TGTTTCAAGGGAAACTATCTCAAG-GAGACAAAA
1022825 CTCATTTCAA
Statistics
Matches: 175, Mismatches: 36, Indels: 54
0.66 0.14 0.20
Matches are distributed among these distances:
27 3 0.02
28 4 0.02
29 27 0.15
30 5 0.03
32 1 0.01
33 1 0.01
35 6 0.03
36 35 0.20
37 86 0.49
38 7 0.04
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.29
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTATCTCAAGGAGACAAAATTT
Found at i:1022912 original size:35 final size:36
Alignment explanation
Indices: 1022866--1022958 Score: 125
Period size: 36 Copynumber: 2.6 Consensus size: 36
1022856 TGTTTCATGA
* ** *
1022866 GAAACTGTCTCAAGGGAGA-AATTTTTTTTTAAAGG
1 GAAACTGTCTCAAGAGAGACAAAGTTTGTTTAAAGG
*
1022901 GAAACTGTCTCAAGAGAGACAAAGTTTGTTTCAAGG
1 GAAACTGTCTCAAGAGAGACAAAGTTTGTTTAAAGG
*
1022937 AAAACTGTCTCAAGAGAGACAA
1 GAAACTGTCTCAAGAGAGACAA
1022959 TGGTGAGCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
35 18 0.35
36 33 0.65
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.26
Consensus pattern (36 bp):
GAAACTGTCTCAAGAGAGACAAAGTTTGTTTAAAGG
Found at i:1023842 original size:22 final size:22
Alignment explanation
Indices: 1023817--1023867 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
1023807 TTGTGTTTGG
1023817 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
1023839 TCAAAGGTTTGGTATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
1023861 TCAAAGG
1 TCAAAGG
1023868 ATTGATGGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.35
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:1024484 original size:20 final size:21
Alignment explanation
Indices: 1024461--1024519 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 21
1024451 TTTGTCCCAT
*
1024461 TTTTTTATTTTTGTTCTTT-C
1 TTTTTTATTCTTGTTCTTTCC
* *
1024481 TTTTTTGTTCTTGTTTTTTCC
1 TTTTTTATTCTTGTTCTTTCC
**
1024502 TTTTTGCTTCTT-TTCTTT
1 TTTTTTATTCTTGTTCTTT
1024520 TTTCTTTTTG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
20 21 0.66
21 11 0.34
ACGTcount: A:0.02, C:0.14, G:0.07, T:0.78
Consensus pattern (21 bp):
TTTTTTATTCTTGTTCTTTCC
Found at i:1024537 original size:22 final size:23
Alignment explanation
Indices: 1024494--1024536 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
1024484 TTTGTTCTTG
*
1024494 TTTTTTCCTTTTTGCTTCTTTTC
1 TTTTTTCCTTTTTGCCTCTTTTC
1024517 TTTTTT-CTTTTTGCC-CTTTT
1 TTTTTTCCTTTTTGCCTCTTTT
1024537 TGTTCTGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 8 0.42
23 6 0.32
ACGTcount: A:0.00, C:0.21, G:0.05, T:0.74
Consensus pattern (23 bp):
TTTTTTCCTTTTTGCCTCTTTTC
Found at i:1029250 original size:21 final size:24
Alignment explanation
Indices: 1029214--1029273 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
1029204 ATATATATAT
* *
1029214 ATAATAAATATAATAACG-AAAA-A
1 ATAAT-AATGTAATAAAGTAAAATA
*
1029237 A-AATAATTTAATAAAGTAAAATA
1 ATAATAATGTAATAAAGTAAAATA
1029260 ATAATAATGTAATA
1 ATAATAATGTAATA
1029274 TAATATAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 10 0.32
22 7 0.23
23 3 0.10
24 11 0.35
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (24 bp):
ATAATAATGTAATAAAGTAAAATA
Found at i:1029266 original size:16 final size:16
Alignment explanation
Indices: 1029245--1029282 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
1029235 AAAAATAATT
1029245 TAATAAAGTAAAATAA
1 TAATAAAGTAAAATAA
* *
1029261 TAATAATGTAATATAA
1 TAATAAAGTAAAATAA
1029277 T-ATAAA
1 TAATAAA
1029283 TACATGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
TAATAAAGTAAAATAA
Found at i:1029998 original size:36 final size:37
Alignment explanation
Indices: 1029956--1030038 Score: 98
Period size: 35 Copynumber: 2.3 Consensus size: 37
1029946 GGATCCTATC
*
1029956 TTTAGGAGTTTAAAACATATCAAAATTCTATCTTA-T
1 TTTAGGAGTTTAAAACATAGCAAAATTCTATCTTATT
* * * *
1029992 TTTAGGAG-TTGAATCCTAGCAGAATTCTATCTTATT
1 TTTAGGAGTTTAAAACATAGCAAAATTCTATCTTATT
*
1030028 TTTAAGAGTTT
1 TTTAGGAGTTT
1030039 GAATCCTAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
35 21 0.54
36 16 0.41
37 2 0.05
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43
Consensus pattern (37 bp):
TTTAGGAGTTTAAAACATAGCAAAATTCTATCTTATT
Found at i:1030023 original size:35 final size:37
Alignment explanation
Indices: 1029979--1030047 Score: 115
Period size: 35 Copynumber: 1.9 Consensus size: 37
1029969 AACATATCAA
*
1029979 AATTCTATCTTA-TTTTAGGAG-TTGAATCCTAGCAG
1 AATTCTATCTTATTTTTAAGAGTTTGAATCCTAGCAG
1030014 AATTCTATCTTATTTTTAAGAGTTTGAATCCTAG
1 AATTCTATCTTATTTTTAAGAGTTTGAATCCTAG
1030048 TAGGACGAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 12 0.39
36 8 0.26
37 11 0.35
ACGTcount: A:0.29, C:0.13, G:0.14, T:0.43
Consensus pattern (37 bp):
AATTCTATCTTATTTTTAAGAGTTTGAATCCTAGCAG
Found at i:1036198 original size:12 final size:12
Alignment explanation
Indices: 1036170--1036199 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
1036160 ATTATTATTT
*
1036170 TTATCGATTTTG
1 TTATTGATTTTG
1036182 TTATTGATTTTG
1 TTATTGATTTTG
1036194 TTATTG
1 TTATTG
1036200 TTGAGTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.17, T:0.63
Consensus pattern (12 bp):
TTATTGATTTTG
Found at i:1043241 original size:15 final size:15
Alignment explanation
Indices: 1043217--1043246 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1043207 CATACATACA
1043217 TATATATATGTATAT
1 TATATATATGTATAT
*
1043232 TATATGTATGTATAT
1 TATATATATGTATAT
1043247 CTCAACAGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (15 bp):
TATATATATGTATAT
Found at i:1044334 original size:20 final size:22
Alignment explanation
Indices: 1044299--1044344 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
1044289 TTTTTAAAAA
* *
1044299 AATAATATATATTATTTATAGC
1 AATAATATATATTATTAAAAGC
1044321 AATAATAT-TA-TATTAAAAGC
1 AATAATATATATTATTAAAAGC
1044341 AATA
1 AATA
1044345 GTTGATAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 12 0.55
21 2 0.09
22 8 0.36
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39
Consensus pattern (22 bp):
AATAATATATATTATTAAAAGC
Found at i:1045355 original size:2 final size:2
Alignment explanation
Indices: 1045314--1045340 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1045304 TAAAACCTCG
1045314 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1045341 CAAAATTCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1047219 original size:3 final size:3
Alignment explanation
Indices: 1047177--1047207 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
1047167 TATTTTTAAA
1047177 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1047208 AATATATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:1048016 original size:16 final size:16
Alignment explanation
Indices: 1047995--1048025 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1047985 TCTCTCAGTT
1047995 AGAGAGAAAAGAGAAA
1 AGAGAGAAAAGAGAAA
*
1048011 AGAGAGAAATGAGAA
1 AGAGAGAAAAGAGAA
1048026 GATGGCCCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (16 bp):
AGAGAGAAAAGAGAAA
Found at i:1050827 original size:6 final size:7
Alignment explanation
Indices: 1050808--1050833 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
1050798 TGCATCATTG
1050808 CATTTTT
1 CATTTTT
1050815 CATTTTT
1 CATTTTT
1050822 CATTTTT
1 CATTTTT
1050829 CATTT
1 CATTT
1050834 ATACTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:1053783 original size:25 final size:22
Alignment explanation
Indices: 1053776--1053828 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 22
1053766 AAGGAAAAAG
1053776 AAAAAAAGAAAGAAAAGAAAAGAA
1 AAAAAAAGAAAGAAAAG-AAA-AA
1053800 AAGAAAAAGAAAGAAAAATGAAAAA
1 AA-AAAAAGAAAG-AAAA-GAAAAA
1053825 AAAA
1 AAAA
1053829 TGAGAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
24 4 0.15
25 14 0.54
26 7 0.27
27 1 0.04
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (22 bp):
AAAAAAAGAAAGAAAAGAAAAA
Found at i:1053791 original size:10 final size:10
Alignment explanation
Indices: 1053755--1053827 Score: 60
Period size: 11 Copynumber: 6.9 Consensus size: 10
1053745 CTCATCCAGC
1053755 AAAGAAAGAAG
1 AAAGAAA-AAG
*
1053766 AAGGAAAAAG
1 AAAGAAAAAG
*
1053776 AAAAAAAGAAAG
1 -AAAGAA-AAAG
1053788 AAA-AGAAAAG
1 AAAGA-AAAAG
1053798 AAAAGAAAAAG
1 -AAAGAAAAAG
1053809 AAAGAAAAATG
1 AAAGAAAAA-G
1053820 AAA-AAAAA
1 AAAGAAAAA
1053828 ATGAGAAATT
Statistics
Matches: 53, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
10 22 0.42
11 26 0.49
12 5 0.09
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.01
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:1053792 original size:5 final size:5
Alignment explanation
Indices: 1053771--1053816 Score: 55
Period size: 5 Copynumber: 9.8 Consensus size: 5
1053761 AGAAGAAGGA
1053771 AAAAG -AAA- AAAAG -AAAG AAAAG AAAAG AAAAG AAAA- AGAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A-AAAG AAAA
1053817 ATGAAAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
4 11 0.31
5 24 0.67
6 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:1053831 original size:11 final size:10
Alignment explanation
Indices: 1053770--1053828 Score: 64
Period size: 11 Copynumber: 5.5 Consensus size: 10
1053760 AAGAAGAAGG
1053770 AAAAAGAAAAA
1 AAAAAG-AAAA
1053781 AAGAAAGAAAA
1 AA-AAAGAAAA
*
1053792 GAAAAGAAAA
1 AAAAAGAAAA
1053802 GAAAAAGAAAGA
1 -AAAAAGAAA-A
*
1053814 AAAATGAAAA
1 AAAAAGAAAA
1053824 AAAAA
1 AAAAA
1053829 TGAGAAATTG
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
10 13 0.32
11 23 0.56
12 5 0.12
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:1056202 original size:114 final size:114
Alignment explanation
Indices: 1055990--1056209 Score: 334
Period size: 114 Copynumber: 1.9 Consensus size: 114
1055980 CACGTTCTCG
* *** * *
1055990 TAGTAGAAATAAGGAGACCTTGTAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
1 TAGTAGAAAGAAGGAGACCAAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGGTTC
*
1056055 GGTATAAACCCCAAAACCAAACATTAGATTTGAAAGATGAATTTGCTCA
66 GGTATAAACCCCAAAACCAAACATTAGAATTGAAAGATGAATTTGCTCA
1056104 TAGTAGAAAGAAGGAGACCAAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGGTTC
1 TAGTAGAAAGAAGGAGACCAAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGGTTC
* * *
1056169 GGTA-AGAACCCCAGAACCAATCATTGGAATTGAAAGATGAA
66 GGTATA-AACCCCAAAACCAAACATTAGAATTGAAAGATGAA
1056210 CTGCATGATC
Statistics
Matches: 95, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
113 1 0.01
114 94 0.99
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (114 bp):
TAGTAGAAAGAAGGAGACCAAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATCTGGTTC
GGTATAAACCCCAAAACCAAACATTAGAATTGAAAGATGAATTTGCTCA
Found at i:1058700 original size:22 final size:22
Alignment explanation
Indices: 1058647--1058700 Score: 92
Period size: 21 Copynumber: 2.5 Consensus size: 22
1058637 ATCTACACTC
1058647 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
1058669 TT-TAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
1058690 TTCAAAGATGA
1 TTCAAAGATGA
1058701 AAGCTTTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 20 0.69
22 9 0.31
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:1059573 original size:76 final size:76
Alignment explanation
Indices: 1059379--1059740 Score: 683
Period size: 76 Copynumber: 4.8 Consensus size: 76
1059369 CTATTTCCCA
1059379 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGC-TTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1059443 AGCC-TAGGGT
66 AGCCTTAGGGT
1059453 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1059518 AGCCTTAGGGT
66 AGCCTTAGGGT
* * *
1059529 CATCTGTAATTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATATTTTTAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1059594 AGCCTTAGGGT
66 AGCCTTAGGGT
1059605 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1059670 AGCCTTAGGGT
66 AGCCTTAGGGT
1059681 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTT
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTT
1059741 GTTATTTTGA
Statistics
Matches: 280, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
74 49 0.17
75 19 0.07
76 212 0.76
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:1059964 original size:76 final size:76
Alignment explanation
Indices: 1059865--1060228 Score: 656
Period size: 76 Copynumber: 4.8 Consensus size: 76
1059855 CTATTTCCCA
* * *
1059865 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGTTTTTTAATGTTTTTAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1059930 AGCCTTAGGGT
66 AGCCTTAGGGT
1059941 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1060006 AGCCTTAGGGT
66 AGCCTTAGGGT
* * *
1060017 CATCTGTAAGTCTTACAGTGCATGACGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1060082 AGCCTTAGGGT
66 AGCCTTAGGGT
*
1060093 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGTCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1060158 AGCCTTAGGGT
66 AGCCTTAGGGT
*
1060169 CATCTGTAAGTCCTATAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTT
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTT
1060229 ATTTTGAAAA
Statistics
Matches: 276, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 276 1.00
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:1060178 original size:488 final size:485
Alignment explanation
Indices: 1059252--1060611 Score: 2393
Period size: 488 Copynumber: 2.8 Consensus size: 485
1059242 CCCAATCAAC
* **
1059252 ATGTTATTTTGAAAAAATAATAAGAAAACGATTTCCATAGTTTCTCATTCAATCTTTTCTAAAAA
1 ATGTTATTTTG-AAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTTTATCTTTTCT-AAAA
* * * *
1059317 TGAAATTGTTGAAAAGTAAGAAAACGATTTTCATAG-TTTCTTACTTAGTAAACTATTTCCCACA
64 TGAAATTGTTAAAAAGTAAGAAAACGATTTCCTTAGTTTTTTTACTTAGTAAACTATTTCCCACA
*
1059381 TCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAG-CTTTTGATGTTTTCAAAG
129 TCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGTTTTTTGATGTTTTCAAAG
1059445 CC-TAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGA
194 CCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGA
*
1059509 TGTTTTCAAAGCCTTAGGGTCATCTGTAATTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGG
259 TGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGG
* *
1059574 GAGCTTTTTGATATTTTTAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAA
324 GAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAA
1059639 AAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCAT
389 AAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCAT
1059704 GATGTTTCCAAAAAGCCTTCGGGAGCTTTTTG
454 GATGTTTCCAAAAAGCCTTCGGGAGCTTTTTG
*
1059736 ATGTTGTTATTTTGAAAAATAATGAGAAAACGATTTACATAGTTTCTCATTTTATCTTTTCTAAA
1 A---TGTTATTTTGAAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTTTATCTTTTCTAAA
*
1059801 ATGAAATTGTTAAAAAGTAAGAAAACAATTTCCTTAGTTTTTTTACTTAGTAAACTATTTCCCAC
63 ATGAAATTGTTAAAAAGTAAGAAAACGATTTCCTTAGTTTTTTTACTTAGTAAACTATTTCCCAC
* *
1059866 ATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGTTTTTTAATGTTTTTAAA
128 ATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGTTTTTTGATGTTTTCAAA
1059931 GCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTG
193 GCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTG
* *
1059996 ATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCTTACAGTGCATGACGTTTCCAAAAAGCCTTCG
258 ATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCG
*
1060061 AGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCA
323 GGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCA
* *
1060126 AAAAGTCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTATAGTGCA
388 AAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCA
1060191 TGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTG
453 TGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTG
*
1060224 ATGTTATTTTGAAAAATAATGAGAAAATGATTTCCATAGTTTCTCATTTTATCTTTTCTAAAATG
1 ATGTTATTTTGAAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTTTATCTTTTCTAAAATG
1060289 AAATTGTTAAAAAGTAAGAAAACGATTTCCTTAGGTTTTTTTACTTAGTAAACTATTTCCCACAT
66 AAATTGTTAAAAAGTAAGAAAACGATTTCCTTA-GTTTTTTTACTTAGTAAACTATTTCCCACAT
1060354 CTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGGAGTTTTTTGATGTTTTCAAAG
130 CTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTC-GGGAGTTTTTTGATGTTTTCAAAG
*
1060419 CCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAATAGCCTTCGGGAGCTTTTTGA
194 CCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGA
*
1060484 TGTTTTCAAAACCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGG
259 TGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGG
* * *
1060549 GAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATATGTAAGCCCTTCAGTGCATGATGATTTC
324 GAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATG-TTTC
1060612 AATATTTCAT
Statistics
Matches: 834, Mismatches: 33, Indels: 14
0.95 0.04 0.02
Matches are distributed among these distances:
484 1 0.00
485 130 0.16
486 188 0.23
487 229 0.27
488 286 0.34
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (485 bp):
ATGTTATTTTGAAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTTTATCTTTTCTAAAATG
AAATTGTTAAAAAGTAAGAAAACGATTTCCTTAGTTTTTTTACTTAGTAAACTATTTCCCACATC
TGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGTTTTTTGATGTTTTCAAAGCC
TTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATG
TTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGA
GCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAA
AGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTACAGTGCATGA
TGTTTCCAAAAAGCCTTCGGGAGCTTTTTG
Found at i:1060521 original size:76 final size:76
Alignment explanation
Indices: 1060351--1060611 Score: 450
Period size: 76 Copynumber: 3.4 Consensus size: 76
1060341 CTATTTCCCA
*
1060351 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGGAGTTTTTTGATGTTTTCA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTC-GGGAGCTTTTTGATGTTTTCA
1060416 AAGCCTTAGGGT
65 AAGCCTTAGGGT
*
1060428 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAATAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1060493 AACCTTAGGGT
66 AGCCTTAGGGT
1060504 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1060569 AGCCTTAGGGT
66 AGCCTTAGGGT
* * *
1060580 CATATGTAAGCCCTTCAGTGCATGATGATTTC
1 CATCTGTAAGTCCTACAGTGCATGATG-TTTC
1060612 AATATTTCAT
Statistics
Matches: 175, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
76 129 0.74
77 46 0.26
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:1060753 original size:3 final size:3
Alignment explanation
Indices: 1060745--1060799 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
1060735 TATTTTTAAA
*
1060745 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AAT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1060793 ATT ATT A
1 ATT ATT A
1060800 CAAGCCCAAG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:1061719 original size:16 final size:16
Alignment explanation
Indices: 1061687--1061745 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
1061677 TTCCGCAGCA
1061687 TTATAATTTTAGAACT
1 TTATAATTTTAGAACT
*
1061703 TTAT-ATTTTAGTCACT
1 TTATAATTTTAG-AACT
* *
1061719 TAATCCAATTTTAGATCT
1 TTAT--AATTTTAGAACT
1061737 TTATAATTT
1 TTATAATTT
1061746 GGTTCTTTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 7 0.21
16 15 0.44
18 5 0.15
19 7 0.21
ACGTcount: A:0.32, C:0.10, G:0.05, T:0.53
Consensus pattern (16 bp):
TTATAATTTTAGAACT
Found at i:1062914 original size:19 final size:20
Alignment explanation
Indices: 1062877--1062914 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1062867 CTTTAGTGCT
* *
1062877 AAAAAGACATGTCATAAAAG
1 AAAAAGAAATGTCAAAAAAG
1062897 AAAAAGAAAT-TCAAAAAA
1 AAAAAGAAATGTCAAAAAA
1062915 TATATATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.68, C:0.08, G:0.11, T:0.13
Consensus pattern (20 bp):
AAAAAGAAATGTCAAAAAAG
Found at i:1070530 original size:31 final size:31
Alignment explanation
Indices: 1070494--1070557 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
1070484 TTCAAAAATA
1070494 ATAAAATAATAATTAAATTGATTAAATTATT
1 ATAAAATAATAATTAAATTGATTAAATTATT
* * *
1070525 ATAAAATAATCATTTAATTTATTAAATTATT
1 ATAAAATAATAATTAAATTGATTAAATTATT
1070556 AT
1 AT
1070558 TATTTTATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (31 bp):
ATAAAATAATAATTAAATTGATTAAATTATT
Found at i:1070566 original size:39 final size:38
Alignment explanation
Indices: 1070505--1070627 Score: 96
Period size: 39 Copynumber: 3.2 Consensus size: 38
1070495 TAAAATAATA
*
1070505 ATTAAATTGATTAAATTATTATAAAATAATCATTTAATTT
1 ATTAAATT-ATTATATT-TTATAAAATAATCATTTAATTT
*
1070545 ATTAAATTATTATTATTTTATATTAA-AAT-ATTT--TTGT
1 ATTAAATTATTA-TATTTTATA-AAATAATCATTTAATT-T
*
1070582 CATTAAATTTATTGA-ATAGTTATAAAATAATCA-TTAATTT
1 -ATTAAA-TTATT-ATAT-TTTATAAAATAATCATTTAATTT
1070622 ATTAAA
1 ATTAAA
1070628 CTTTATGATC
Statistics
Matches: 68, Mismatches: 4, Indels: 23
0.72 0.04 0.24
Matches are distributed among these distances:
36 2 0.03
37 1 0.01
38 14 0.21
39 33 0.49
40 16 0.24
41 2 0.03
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (38 bp):
ATTAAATTATTATATTTTATAAAATAATCATTTAATTT
Found at i:1073077 original size:23 final size:19
Alignment explanation
Indices: 1073032--1073081 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
1073022 AGGGTGGTCC
1073032 GTGAGTGAGTGGCTAGCGG
1 GTGAGTGAGTGGCTAGCGG
1073051 GTGAGTGAGTGGCTAGCGG
1 GTGAGTGAGTGGCTAGCGG
1073070 GTGAGTGAGTGG
1 GTGAGTGAGTGG
1073082 TCGGTTGTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.16, C:0.08, G:0.54, T:0.22
Consensus pattern (19 bp):
GTGAGTGAGTGGCTAGCGG
Found at i:1074199 original size:23 final size:21
Alignment explanation
Indices: 1074172--1074214 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1074162 TAAAAAAATT
*
1074172 AAATAATTTATCTAATTTTTATA
1 AAATAA-TTAT-TAAATTTTATA
1074195 AAATAATTATTAAATTTTAT
1 AAATAATTATTAAATTTTAT
1074215 CGAACTTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
22 4 0.21
23 6 0.32
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
AAATAATTATTAAATTTTATA
Found at i:1078284 original size:27 final size:26
Alignment explanation
Indices: 1078257--1078309 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
1078247 ATCTAATAAT
*
1078257 AATAT-AT-AAACTTAAACTAAAATA
1 AATATGATAAAACTTAAAATAAAATA
*
1078281 AATATGGATAAAATTTAAAATAAAATA
1 AATAT-GATAAAACTTAAAATAAAATA
1078308 AA
1 AA
1078310 ATTTACACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.21
26 2 0.08
27 17 0.71
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (26 bp):
AATATGATAAAACTTAAAATAAAATA
Found at i:1080554 original size:20 final size:21
Alignment explanation
Indices: 1080524--1080563 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
1080514 AGTCGTTGGG
*
1080524 GCCTGATGGTATCGATACTAT
1 GCCTGATGGTATCAATACTAT
1080545 GCCT-ATGGTATCAATACTA
1 GCCTGATGGTATCAATACTA
1080564 CTATACAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.33
Consensus pattern (21 bp):
GCCTGATGGTATCAATACTAT
Found at i:1082082 original size:124 final size:124
Alignment explanation
Indices: 1081862--1082351 Score: 637
Period size: 124 Copynumber: 3.9 Consensus size: 124
1081852 TGGTAAACTG
* * * * * * * * * * *
1081862 TGAAAGCAATCTAAGACTATGGTATGATCTATTATGACTACTGTATTGTGTTCATCGGCTCGAA-
1 TGAAATCAATCCAAGACTGTGGCATGATCTGTTATAACTACTATATCGTGTTAATTGGTTCGAAT
* * * *
1081926 TCTGAATGTA-CTTCAGCAAGAATTACATTACTTGTAATACAAGCATGAAACAAAAAACAA
66 TC-GAATGTACCTTGA-CGAGAACTGCATTACTTGTAATACAAGCATGAAACAAAAAACAA
*
1081986 TGAAATCAATCCAAGACTGTGGTATGATCTGTTATAACTACTATATCGTGTTAATTGGTTCGAAT
1 TGAAATCAATCCAAGACTGTGGCATGATCTGTTATAACTACTATATCGTGTTAATTGGTTCGAAT
*
1082051 TCGAATGTACCTTGACGAGATCTGCATTACTTGTAATACAAGCATGAAACAAAAAACAA
66 TCGAATGTACCTTGACGAGAACTGCATTACTTGTAATACAAGCATGAAACAAAAAACAA
* * *
1082110 TGAAATCAATCCATGACTGGGGTGTGGCATGATCTGTTATAACTACTATATCATGTTAATTTGTT
1 TGAAATCAATCCAAGAC-----TGTGGCATGATCTGTTATAACTACTATATCGTGTTAATTGGTT
* * * *
1082175 -GAATACGAATGTACTTTGACGAGAACTGCATTGCTTGTAATACAAGCATG-AACTAAAAACAA
61 CGAATTCGAATGTACCTTGACGAGAACTGCATTACTTGTAATACAAGCATGAAACAAAAAACAA
*
1082237 TGAAATCAATCCAAGACTGTGGCATGATCTGTTATAACTACTATATCGTGTTAATTGGTTTGAAT
1 TGAAATCAATCCAAGACTGTGGCATGATCTGTTATAACTACTATATCGTGTTAATTGGTTCGAAT
* * *
1082302 TCGAATGTTCTTTGAAGAGAACTGCATTACTTGTAATACAAGCATGAAAC
66 TCGAATGTACCTTGACGAGAACTGCATTACTTGTAATACAAGCATGAAAC
1082352 TGGAAGAAAA
Statistics
Matches: 326, Mismatches: 31, Indels: 18
0.87 0.08 0.05
Matches are distributed among these distances:
122 41 0.13
123 46 0.14
124 120 0.37
125 6 0.02
127 27 0.08
128 46 0.14
129 40 0.12
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.31
Consensus pattern (124 bp):
TGAAATCAATCCAAGACTGTGGCATGATCTGTTATAACTACTATATCGTGTTAATTGGTTCGAAT
TCGAATGTACCTTGACGAGAACTGCATTACTTGTAATACAAGCATGAAACAAAAAACAA
Found at i:1083650 original size:16 final size:16
Alignment explanation
Indices: 1083629--1083669 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
1083619 TATCTGCAGG
1083629 ATTTTCTGATGTCGTA
1 ATTTTCTGATGTCGTA
1083645 ATTTTCTGATGTCGTA
1 ATTTTCTGATGTCGTA
1083661 ATTTTCTGA
1 ATTTTCTGA
1083670 AGTATAATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.20, C:0.12, G:0.17, T:0.51
Consensus pattern (16 bp):
ATTTTCTGATGTCGTA
Done.