genome.fa.s2845.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002845.1 Hibiscus syriacus cultivar Beakdansim tig00005857_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71601

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7821--7860	19	2.0	20	85	9	55	37	0	37	25	1.56
8201--8304	45	2.3	46	83	8	133	31	20	17	30	1.95
11833--11939	31	3.4	32	79	8	130	29	17	18	33	1.94
12683--12729	22	2.1	23	88	7	71	25	14	29	29	1.95
12808--12869	19	3.3	19	93	0	97	35	16	8	40	1.78
16393--16439	16	3.0	16	76	14	53	42	6	12	38	1.69
18108--18166	20	3.0	20	71	9	52	49	1	1	47	1.21
18575--18611	17	2.1	18	90	5	58	37	5	0	56	1.22
23485--23632	72	2.0	73	97	1	280	41	13	10	33	1.79
25257--25712	80	5.6	82	75	10	265	31	19	15	33	1.93
25257--25727	81	5.8	80	76	8	357	31	19	15	33	1.93
25268--25699	42	10.6	42	75	10	312	31	18	15	34	1.93
27043--27067	13	1.9	13	100	0	50	36	0	16	48	1.46
28954--29054	44	2.3	44	92	0	166	36	22	15	24	1.94
32723--32756	16	2.1	16	88	0	50	50	0	2	47	1.16
32793--32826	16	2.0	18	88	11	54	26	2	5	64	1.30
33296--33541	128	1.9	129	91	1	404	35	13	15	36	1.86
33938--34013	35	2.2	35	92	0	125	35	1	23	39	1.63
35622--35680	31	1.9	31	89	0	91	42	6	8	42	1.61
35705--35747	22	2.0	22	100	0	86	51	13	0	34	1.42
35707--35755	22	2.2	22	88	3	71	55	14	0	30	1.40
35695--36256	54	10.4	54	78	14	540	51	11	0	36	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35727--35997	32	9.6	32	70	26	211	52	12	0	34	1.42
35695--35940	86	3.0	84	89	7	378	52	11	0	34	1.41
35793--35841	22	2.2	22	85	3	62	53	14	2	30	1.52
35850--35922	22	3.3	22	66	19	53	54	15	0	30	1.41
35927--35975	22	2.2	22	85	3	62	57	10	0	32	1.32
35695--36048	134	2.6	134	80	9	464	51	12	0	35	1.42
36004--36204	32	7.1	32	68	30	161	52	12	0	35	1.39
35900--36204	160	1.9	163	91	6	503	52	12	0	35	1.39
36085--36127	22	2.0	22	95	0	77	51	11	0	37	1.39
35705--36136	80	5.4	77	77	15	296	51	12	0	34	1.42
36087--36135	22	2.2	22	85	3	62	55	12	0	32	1.37
36139--36241	22	4.5	22	71	7	89	51	8	0	39	1.33
36184--36286	15	6.5	15	80	15	118	52	2	0	44	1.16
36130--36286	69	2.3	67	89	5	228	52	5	0	42	1.25
35890--36256	160	2.3	152	78	15	431	51	10	0	37	1.37
38836--38868	17	1.9	17	88	11	50	54	3	0	42	1.15
38932--38997	33	2.0	33	100	0	132	42	15	18	24	1.88
44830--44906	38	2.0	38	90	5	120	14	10	33	41	1.80
46109--46164	30	2.0	27	82	10	67	44	5	5	44	1.49
54118--54161	2	22.0	2	100	0	88	50	0	0	50	1.00
54271--54304	2	17.0	2	100	0	68	50	0	0	50	1.00
55889--55981	18	4.9	18	78	10	105	24	30	23	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55888--55981	38	2.5	38	89	0	152	24	29	23	22	1.99
55889--55984	20	5.1	19	79	8	115	25	29	23	21	1.99
56898--56959	24	2.6	24	73	17	65	43	19	4	32	1.72
57240--57297	20	2.6	22	89	10	84	25	22	20	31	1.98
58536--58573	20	1.9	20	94	0	67	31	34	15	18	1.92
58584--58736	56	2.5	63	74	20	180	33	20	16	28	1.95
58601--58718	57	2.1	55	82	13	143	34	21	16	27	1.95
64119--64215	44	2.2	44	85	10	128	27	23	21	26	1.99
66835--66872	20	1.9	20	94	0	67	31	34	15	18	1.92
67718--67802	42	2.0	42	100	0	170	38	18	9	32	1.83

Tables:   1

The End!