Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002846.1 Hibiscus syriacus cultivar Beakdansim tig00005858_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98313

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2973--3044
30
2.4
31
81
9
87
43
5
18
33
1.73
3972--4006
10
3.4
10
96
4
61
57
14
8
20
1.63
4691--4732
21
2.0
21
100
0
84
33
19
23
23
1.97
4923--4968
22
2.0
23
95
4
85
39
0
13
47
1.42
7976--8006
2
15.5
2
100
0
62
51
0
0
48
1.00
8403--8445
23
1.9
22
85
4
59
37
23
16
23
1.94
8929--8997
2
34.5
2
94
0
120
49
2
0
47
1.16
13310--13349
4
10.0
4
100
0
80
50
25
0
25
1.50
13727--13800
23
3.2
23
79
7
87
35
22
27
14
1.94
13788--13830
23
1.9
22
85
4
59
39
23
16
20
1.92
16476--16656
64
2.8
63
82
5
211
27
17
25
29
1.97
16608--16654
19
2.6
17
83
10
58
23
17
31
27
1.96
16498--16705
65
3.2
64
79
13
212
27
16
24
30
1.97
23100--23139
21
1.9
21
85
10
55
35
10
2
52
1.48
25064--25244
64
2.8
63
83
3
218
27
17
26
29
1.97
25192--25242
19
2.7
19
85
8
70
25
15
35
23
1.94
25085--25244
65
2.5
65
86
3
216
27
16
26
30
1.97
25086--25293
65
3.2
63
79
14
210
27
17
25
30
1.97
26681--26736
24
2.6
20
77
22
60
28
25
21
25
1.99
27963--28197
60
3.9
60
92
0
380
22
15
22
39
1.91
29062--29134
31
2.3
30
81
6
83
46
13
2
36
1.58
51672--51727
29
1.9
29
82
7
69
16
10
14
58
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55620--55652
2
17.0
2
93
6
59
51
0
0
48
1.00
57457--57531
31
2.4
29
83
14
89
28
20
14
37
1.92
57374--57595
97
2.2
100
82
8
269
27
18
15
38
1.92
59585--59689
40
2.6
40
95
0
183
22
15
27
34
1.94
60684--60825
43
3.2
43
69
13
115
26
30
17
25
1.97
60507--60784
130
2.1
130
86
2
378
25
32
16
25
1.97
60545--60799
131
2.0
130
87
0
366
26
31
18
24
1.97
61131--61190
23
2.6
24
77
15
63
31
1
3
63
1.20
62838--62894
29
2.0
29
86
6
80
17
10
15
56
1.67
65024--65080
27
2.1
28
80
9
73
31
0
3
64
1.10
66951--66992
3
14.0
3
89
0
66
33
0
33
33
1.58
72730--72775
21
2.2
21
100
0
92
15
8
43
32
1.77
72888--72927
20
2.0
21
90
5
64
25
17
22
35
1.95
77182--77364
89
2.0
90
85
3
244
21
22
25
30
1.99
80927--81041
58
2.0
58
89
3
178
33
14
19
33
1.92
89114--89145
15
2.1
15
94
0
55
6
25
15
53
1.65
90343--90410
35
1.9
35
88
5
102
48
16
2
32
1.61
93469--93756
89
3.3
89
90
4
426
31
22
6
38
1.81
93469--93756
45
6.6
45
84
5
385
31
22
6
38
1.81
98222--98255
17
1.9
18
94
5
61
64
11
11
11
1.50

Tables:   1

The End!