genome.fa.s2847.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002847.1 Hibiscus syriacus cultivar Beakdansim tig00005859_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91233

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183--266	35	2.3	38	82	10	104	36	21	20	21	1.95
238--303	23	2.7	23	84	13	71	30	16	24	28	1.97
3803--3877	36	2.1	36	94	0	132	30	10	32	26	1.90
6020--6893	443	2.0	441	98	0	1694	37	24	11	25	1.90
8719--8766	15	3.2	15	93	0	78	31	0	6	62	1.20
8975--9009	17	2.1	17	94	0	61	54	8	0	37	1.31
8990--9048	22	2.8	22	85	10	70	47	5	0	47	1.24
9756--10241	228	2.1	228	95	0	875	44	8	7	39	1.62
10506--10563	18	3.1	18	79	16	64	56	12	13	17	1.66
10520--10563	18	2.3	20	85	14	67	56	9	15	18	1.65
10308--10772	176	2.6	179	88	2	659	42	14	17	26	1.87
10705--10744	18	2.4	17	91	8	64	47	12	17	22	1.81
11534--11570	18	2.1	18	89	0	56	32	5	10	51	1.60
11526--11572	24	2.0	24	86	0	67	34	4	14	46	1.64
11829--11914	39	2.2	39	93	0	145	50	17	12	19	1.78
12335--12407	23	3.2	23	84	0	92	34	4	20	41	1.72
16699--16728	15	2.0	15	93	0	51	20	0	23	56	1.42
17573--17617	20	2.3	19	85	11	56	20	26	24	28	1.99
17825--17916	45	2.0	45	100	0	184	34	27	6	31	1.82
31278--31362	23	3.7	23	78	9	93	22	31	25	20	1.98
31278--31362	24	3.7	23	83	7	93	22	31	25	20	1.98
32683--32723	18	2.3	18	91	0	64	46	21	31	0	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40561--40611	24	2.1	24	100	0	102	50	7	7	33	1.60
40700--40738	19	2.1	19	100	0	78	33	5	10	51	1.58
42169--42216	24	2.0	24	100	0	96	50	8	8	33	1.63
42305--42343	19	2.1	19	100	0	78	33	5	10	51	1.58
46108--46184	25	3.0	25	77	3	91	42	35	1	20	1.61
46108--46184	26	3.0	26	75	9	86	42	35	1	20	1.61
46108--46198	25	3.6	25	74	2	83	39	35	1	24	1.63
46743--46804	28	2.1	31	85	8	85	33	0	1	64	1.03
47471--47512	2	21.5	2	95	4	77	47	0	0	52	1.00
64458--64502	21	2.1	21	88	8	65	46	0	2	51	1.13
65239--65330	32	2.9	32	85	0	121	33	16	10	39	1.83
75195--75367	24	7.2	24	68	25	98	49	1	0	49	1.12
75224--75330	41	2.7	40	79	17	116	43	1	0	53	1.18
75213--75287	15	5.3	15	70	23	72	45	1	1	52	1.17
76632--76694	24	2.5	24	94	5	108	36	7	22	33	1.83
77597--77895	149	2.0	149	96	1	546	44	16	8	30	1.78
82481--82544	28	2.3	28	100	0	128	42	42	3	12	1.58
83170--83207	3	12.7	3	83	10	51	71	0	0	28	0.87
83168--83210	12	3.5	12	80	3	50	72	0	0	27	0.85
83349--83838	134	3.7	134	91	0	730	24	17	31	26	1.97
83578--83789	40	5.0	41	68	20	130	24	17	33	25	1.96
84198--84511	131	2.4	133	85	5	415	42	14	17	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84349--84408	31	2.0	30	83	9	77	41	11	13	33	1.80
84633--84705	29	2.6	28	80	8	85	43	12	15	28	1.82
84870--85174	104	2.9	104	84	3	362	42	10	14	32	1.79
85351--85498	35	4.0	36	79	10	149	37	13	16	32	1.87
87142--87230	18	5.4	16	71	23	60	0	16	7	75	1.03
87161--87203	9	4.8	9	81	18	54	0	11	4	83	0.78
87142--87232	32	2.8	31	73	8	83	0	17	7	74	1.04
87195--87229	17	1.9	18	88	11	54	0	17	8	74	1.06
87143--87249	47	2.2	49	79	12	125	0	16	7	74	1.09
87164--87244	42	1.9	43	85	5	112	1	16	6	76	1.05
88506--88539	12	2.8	12	90	4	50	58	8	17	14	1.61

Tables:   1

The End!