genome.fa.s2848.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002848.1 Hibiscus syriacus cultivar Beakdansim tig00005860_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  185969

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9323--9362	18	2.3	18	86	4	55	47	0	5	47	1.24
11979--12027	22	2.2	22	82	7	55	26	10	12	51	1.71
12020--12092	37	2.0	37	88	0	110	30	17	9	42	1.81
12884--12923	18	2.2	18	90	0	62	7	12	7	72	1.27
23576--23626	20	2.5	20	100	0	102	37	3	27	31	1.75
23576--23633	20	2.9	19	92	2	71	34	6	29	29	1.83
23820--23867	2	24.0	2	100	0	96	50	0	0	50	1.00
32912--32951	21	1.9	21	89	0	62	25	40	25	10	1.86
48948--49018	36	2.0	36	88	5	108	22	19	26	30	1.98
50917--50971	28	1.9	29	81	3	67	43	5	0	50	1.25
54207--54287	22	3.7	21	77	9	72	60	2	4	32	1.31
55588--55632	3	15.0	3	90	0	72	62	2	0	35	1.08
56840--56887	3	16.0	3	95	0	87	64	2	0	33	1.05
57052--58182	76	14.9	76	94	0	1951	36	20	19	23	1.95
59253--59368	54	2.1	54	90	3	180	22	19	17	40	1.91
63614--63651	10	3.9	10	82	6	51	2	7	2	86	0.74
63604--63645	17	2.4	18	81	18	54	2	11	2	83	0.84
70748--70795	3	16.0	3	91	0	78	62	2	0	35	1.07
74054--74098	18	2.5	18	92	0	72	42	40	6	11	1.67
80590--80714	42	3.0	41	90	4	187	34	25	21	18	1.96
81671--81806	29	4.9	28	79	9	127	50	16	2	31	1.57
81817--81841	13	1.9	13	100	0	50	16	16	52	16	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85778--85814	16	2.3	17	86	9	51	37	0	10	51	1.37
86797--86878	41	2.0	41	100	0	164	36	4	34	24	1.77
87265--87328	2	32.0	2	100	0	128	50	0	0	50	1.00
88535--89026	182	2.7	182	92	0	797	41	14	16	28	1.87
91201--91244	21	2.1	21	95	0	79	40	11	34	13	1.81
91266--91390	66	1.9	66	84	0	169	32	3	40	23	1.70
91499--91533	18	1.9	18	88	0	52	60	0	34	5	1.21
93457--94590	200	5.7	199	84	5	1394	38	14	15	31	1.88
93457--94590	400	2.8	398	88	3	1584	38	14	15	31	1.88
96053--97219	199	5.8	198	87	3	1540	37	14	15	32	1.88
96053--97219	200	5.8	200	87	4	1547	37	14	15	32	1.88
96053--97219	399	2.9	394	85	4	1612	37	14	15	32	1.88
101335--101373	20	2.0	19	85	5	51	48	5	15	30	1.66
101681--101733	21	2.5	21	100	0	106	37	9	16	35	1.82
101482--101918	220	2.0	220	85	1	599	38	13	15	32	1.87
102056--102182	64	2.0	64	90	0	200	33	12	7	45	1.71
102162--102222	23	2.7	23	78	0	68	39	14	3	42	1.62
103902--103970	17	4.3	16	74	13	54	73	0	7	18	1.05
103874--103971	36	2.7	38	79	17	97	70	0	7	22	1.11
104008--104079	17	4.4	17	74	20	64	73	0	6	19	1.05
105459--105644	84	2.2	83	81	6	214	26	18	22	31	1.97
105511--105703	84	2.3	85	83	2	239	26	19	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106174--106435	106	2.5	106	92	1	427	22	19	25	32	1.97
110807--110846	21	1.9	21	89	0	62	10	25	40	25	1.86
119996--120062	4	16.5	4	77	9	64	70	0	4	25	1.06
120032--120100	17	4.3	16	74	13	54	73	0	7	18	1.05
120000--120101	36	2.7	38	80	16	101	70	0	6	22	1.10
120138--120209	17	4.4	17	74	20	64	73	0	6	19	1.05
121353--121413	23	2.6	23	84	2	77	54	3	1	40	1.27
121370--121423	24	2.3	23	87	9	74	50	3	3	42	1.38
121825--121863	16	2.4	16	91	0	60	23	10	17	48	1.78
122226--122257	14	2.1	16	88	11	50	46	6	9	37	1.61
143426--143462	14	2.7	13	88	12	56	21	0	32	45	1.52
143870--143915	20	2.2	21	88	3	67	34	34	13	17	1.88
143876--143921	20	2.2	21	84	7	58	36	36	6	19	1.78
144733--144792	19	3.1	19	72	9	57	35	18	11	35	1.87
144846--144922	20	3.8	20	74	3	64	25	19	22	32	1.97
144840--144894	20	2.7	20	77	2	56	25	18	25	30	1.98
153001--153048	3	16.3	3	95	4	89	68	0	31	0	0.90
153838--154061	74	3.1	75	83	6	228	31	1	10	56	1.44
153884--153990	19	5.7	19	68	16	55	28	0	13	57	1.43
153874--154061	74	2.6	73	87	4	247	30	1	12	55	1.43
154718--154758	19	2.2	19	86	4	57	21	9	0	68	1.18
155049--155079	12	2.6	12	94	0	53	9	41	0	48	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155712--155783	20	3.6	20	96	0	135	29	26	23	20	1.99
159059--159135	31	2.5	30	81	8	84	25	6	9	58	1.53
161853--162029	93	1.9	93	91	0	291	40	15	5	38	1.71
163732--163764	16	2.0	17	94	5	59	33	12	24	30	1.91
171277--171329	13	3.9	13	77	18	54	20	5	0	73	1.03
175733--175765	13	2.5	13	95	0	57	9	15	0	75	1.03
176359--176407	14	3.6	14	81	15	50	20	10	0	69	1.17
176370--176406	12	3.2	12	88	11	51	21	8	0	70	1.13
178291--178327	13	2.7	14	84	16	51	5	32	0	62	1.18
179838--179891	21	2.6	21	96	0	99	37	11	22	29	1.89
180944--181042	44	2.2	44	85	5	128	23	24	24	28	2.00
183354--183380	6	4.5	6	100	0	54	18	18	33	29	1.95

Tables:   1

The End!