Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002849.1 Hibiscus syriacus cultivar Beakdansim tig00005862_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 94870
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:2181 original size:86 final size:86
Alignment explanation
Indices: 2036--2205 Score: 322
Period size: 86 Copynumber: 2.0 Consensus size: 86
2026 CTTTAACAGG
2036 TTTCCCACTAATTTGCCAATATTAACCAGGATTCCTTCATCAAAGTATTCCATTGGTAGCCCTGG
1 TTTCCCACTAATTTGCCAATATTAACCAGGATTCCTTCATCAAAGTATTCCATTGGTAGCCCTGG
2101 AATGTGTATCCAAACTGCTCT
66 AATGTGTATCCAAACTGCTCT
*
2122 TTTCCCACTAATTTGCCAATATTTACCAGGATTCCTTCATCAAAGTATTCCATTGGTAGCCCTGG
1 TTTCCCACTAATTTGCCAATATTAACCAGGATTCCTTCATCAAAGTATTCCATTGGTAGCCCTGG
*
2187 AATGTGTATCCACACTGCT
66 AATGTGTATCCAAACTGCT
2206 GAGGAGGAAA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (86 bp):
TTTCCCACTAATTTGCCAATATTAACCAGGATTCCTTCATCAAAGTATTCCATTGGTAGCCCTGG
AATGTGTATCCAAACTGCTCT
Found at i:7610 original size:23 final size:23
Alignment explanation
Indices: 7584--7635 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
7574 ATATACTCAC
* *
7584 GAACATATTTATTTAGTGTTCAT
1 GAACATATATATTTAGTATTCAT
*
7607 GAACATATATATTTAGTATTCTT
1 GAACATATATATTTAGTATTCAT
7630 GAACAT
1 GAACAT
7636 GTTCATTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.44
Consensus pattern (23 bp):
GAACATATATATTTAGTATTCAT
Found at i:11267 original size:18 final size:19
Alignment explanation
Indices: 11244--11284 Score: 75
Period size: 18 Copynumber: 2.2 Consensus size: 19
11234 ACTCAACCCC
11244 AAAAAGAAAATT-AGGGAG
1 AAAAAGAAAATTAAGGGAG
11262 AAAAAGAAAATTAAGGGAG
1 AAAAAGAAAATTAAGGGAG
11281 AAAA
1 AAAA
11285 TTAATATAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.66, C:0.00, G:0.24, T:0.10
Consensus pattern (19 bp):
AAAAAGAAAATTAAGGGAG
Found at i:12355 original size:226 final size:227
Alignment explanation
Indices: 11958--12567 Score: 877
Period size: 227 Copynumber: 2.7 Consensus size: 227
11948 ACATAATCGT
* * * * *
11958 TTAATTACTGGAAACATTATAAACCATAATAACATAACAGGTAGCGCTTATGTAATGTAATAGGT
1 TTAATTACTGGAAACATTATCAACCATAATAACATAACAAGTAACGTTTATTTAATGTAATAGGT
* * * * * * * *
12023 AACGCTTTTTTAAAGCTAATGGAGCCTTAGAAATCCGACGATAACAAAATAGGTTAATTACTTAA
66 AGCGCATGTTTAAAGCTGATGGGGCCTTAGAAATCAGACGATAACAAAATAGATTAATTAATTAA
* * ** * *
12088 TTTGTTATCAATATTATCAACATATTAGGTAGGGGCTAAAATGTTACCAAA-GTTTAAGCTGATT
131 TTTGTTATTAATATTATCAATATATTAGGTACCGCCTAAAATGTTACCAAATGTTTAAGCTGATG
12152 GAGCCTTAGAAATCCGACAATAACAAAATAGG
196 GAGCCTTAGAAATCCGACAATAACAAAATAGG
*
12184 TTAATTAATGGAAACATTATCAACCATAATAACATAACAAGTAACGTTTATTTAATGTAATAGGT
1 TTAATTACTGGAAACATTATCAACCATAATAACATAACAAGTAACGTTTATTTAATGTAATAGGT
*
12249 AGCGCATGTTTAAAGCTGATGGGGCCTTAGAAATTAGACGATAACAAAATAGATTAATTAATTAA
66 AGCGCATGTTTAAAGCTGATGGGGCCTTAGAAATCAGACGATAACAAAATAGATTAATTAATTAA
*
12314 TTTGTTATTAATATTATCAATATATTAGGTACCGCCTAAAATGTTACCAAATTTTTAAGCTGATG
131 TTTGTTATTAATATTATCAATATATTAGGTACCGCCTAAAATGTTACCAAATGTTTAAGCTGATG
* * *
12379 GAGTCTTAGAAATCTGACGATAACAAAATAGG
196 GAGCCTTAGAAATCCGACAATAACAAAATAGG
* * *
12411 TTAATTACTAGAAACATCATCAACCATAATAACATAACAACTAACGTTTATTTAATGTAATAGGT
1 TTAATTACTGGAAACATTATCAACCATAATAACATAACAAGTAACGTTTATTTAATGTAATAGGT
* * *
12476 AGCGCCTGTTTAAAGATGATGGGGCCTTAGAAATCCA-ACGATAACAAAATA-AGTTAATTATTT
66 AGCGCATGTTTAAAGCTGATGGGGCCTTAGAAAT-CAGACGATAACAAAATAGA-TTAATTAATT
*
12539 GATTTGTT-TTCAATATTATCAATATATTA
129 AATTTGTTATT-AATATTATCAATATATTA
12568 CCGTATACAT
Statistics
Matches: 346, Mismatches: 34, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
226 164 0.47
227 181 0.52
228 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (227 bp):
TTAATTACTGGAAACATTATCAACCATAATAACATAACAAGTAACGTTTATTTAATGTAATAGGT
AGCGCATGTTTAAAGCTGATGGGGCCTTAGAAATCAGACGATAACAAAATAGATTAATTAATTAA
TTTGTTATTAATATTATCAATATATTAGGTACCGCCTAAAATGTTACCAAATGTTTAAGCTGATG
GAGCCTTAGAAATCCGACAATAACAAAATAGG
Found at i:12714 original size:130 final size:127
Alignment explanation
Indices: 12565--12877 Score: 362
Period size: 130 Copynumber: 2.4 Consensus size: 127
12555 TATCAATATA
* * *
12565 TTACCGTATACATTGTTAATTTATTTATTACTTTAAAGTAATAGGTTTCGAAATTATAAGAATTG
1 TTACCGT-TACATTGTTAATTTATATATTACTTTAAAGAAATAGGTTTCGAAATTATAAGAATCG
* * * * *
12630 ATACTTATATGA-CAGTATCGATAATTGTACT-TTTATGTCTATTTTCATTATA-CTGGTAGAAA
65 ATACCTATATAATAAGTATCGATAATTG-A-TGTTTATGACTATTATCATTATATC-GGTAG--A
12692 CGT
125 CGT
* * * * * *
12695 TTACCGTGTACATTGTTAATTTATCTATTACATTAAAGCAGTAGGTTTCGAAATTCTAAGTATCG
1 TTACCGT-TACATTGTTAATTTATATATTACTTTAAAGAAATAGGTTTCGAAATTATAAGAATCG
* *
12760 ATACCTATATAATAAGTATCGATACTTGATGTTTATGACTATTATCATTATATCGGTAGACTT
65 ATACCTATATAATAAGTATCGATAATTGATGTTTATGACTATTATCATTATATCGGTAGACGT
* * * *
12823 TTACCGTTACATTGTAAATTTACATATTACTTTAAAGAAATATGTTTCTAAATTA
1 TTACCGTTACATTGTTAATTTATATATTACTTTAAAGAAATAGGTTTCGAAATTA
12878 CGGGTATCGA
Statistics
Matches: 156, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
127 39 0.25
128 10 0.06
129 1 0.01
130 92 0.59
131 14 0.09
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (127 bp):
TTACCGTTACATTGTTAATTTATATATTACTTTAAAGAAATAGGTTTCGAAATTATAAGAATCGA
TACCTATATAATAAGTATCGATAATTGATGTTTATGACTATTATCATTATATCGGTAGACGT
Found at i:13101 original size:200 final size:196
Alignment explanation
Indices: 12753--13696 Score: 1011
Period size: 200 Copynumber: 4.7 Consensus size: 196
12743 CGAAATTCTA
* * *
12753 AGTATCGATACCTATATAATAAGTATCGATACTTGATGTTTATGACTATTATCATTATATCGGTA
1 AGTATCGATACCTATATAATAAGTATCGATACTT-ATGTTTACGCCTATTATCATTATACCGGTA
* * * * *
12818 GACTTTTACCG-TTACATTGTAAATTTACATATTACTTTAAAGAAATATGTTTCTAAA-TTACGG
65 GATTTTTACCGTTTACATTGTAAATTTAC-TATTACTTTAAAGTAAT-CGTTTCGAAATTTA--A
* *
12881 GTATCGATACTTTGTACATGTGTATCGATATTTTTTGCATGCAAATTGTTTGAGATGCATACTAG
126 GTATCGATACTTTATACATGTGTATCGATACTTTTTGCATGCAAATTGTTTGAGATGCATACTAG
12946 AATAAC
191 AATAAC
** * * * * ***
12952 AGTATCGATACCTATAT-ATAAAGTATTTATACTTGGTATTTACGTCTATTATCAATATACCAAC
1 AGTATCGATACCTATATAAT-AAGTATCGATACTT-ATGTTTACGCCTATTATCATTATACCGGT
*
13016 ATATTTTTACCGTTTACATTGTAAATTTATCTATTACTTTAAAGTAATCGGTTTCGAAATTTAAC
64 AGATTTTTACCGTTTACATTGTAAATTTA-CTATTACTTTAAAGTAATC-GTTTCGAAATTTAA-
* * * *
13081 ATATCGATACTTTATACATGTGTATCGATACTTTTTGCGTGCAAATTATTTGAGATGCATACTGG
126 GTATCGATACTTTATACATGTGTATCGATACTTTTTGCATGCAAATTGTTTGAGATGCATACTAG
13146 AATAAC
191 AATAAC
* * *
13152 AGTATTGATACCTATATAATAAGTATCGATACTTTATGTTTACGCCTATTATCATTAAACCAGTA
1 AGTATCGATACCTATATAATAAGTATCGATAC-TTATGTTTACGCCTATTATCATTATACCGGTA
* * *
13217 GATTTTTACCGTTTACATTGTCAATTTACGTATTACTTTAAAGTAATACATTTCAAAATTCTAAG
65 GATTTTTACCGTTTACATTGTAAATTTAC-TATTACTTTAAAGTAAT-CGTTTCGAAATT-TAAG
** *
13282 TATCGATACTTGTTATAC--GTGTATCGATACTTTTTGCATGCAAATTGTTTGAGATATATATTA
127 TATCGATAC-T-TTATACATGTGTATCGATACTTTTTGCATGCAAATTGTTTGAGATGCATACTA
13345 GAATAAC
190 GAATAAC
* * * **
13352 AATATCGATACCTATATAATAAGTATCGATACGTTATGTTTATGCATATTATCATTATAATGGTA
1 AGTATCGATACCTATATAATAAGTATCGATAC-TTATGTTTACGCCTATTATCATTATACCGGTA
* * * * * * *
13417 GATTTTTATCGTTTACATTATAAATCTATGTATTACTTTAATGTAATATGTTTTGAAATTCTAAG
65 GATTTTTACCGTTTACATTGTAAATTTA-CTATTACTTTAAAGTAAT-CGTTTCGAAATT-TAAG
* * * * * * * *
13482 TATCAATACTTGT-TATATGTGTATCGATACTTTGTGCGTGTAAATTGTTTGAGATTCATATTGG
127 TATCGATACTT-TATACATGTGTATCGATACTTTTTGCATGCAAATTGTTTGAGATGCATACTAG
*
13546 AATAAA
191 AATAAC
* * * *
13552 AGTATCGATACATA-AAACATAAAAGGTATCGATACTTTAAGTTTACGCCTATTATCATTAAACC
1 AGTATCGATACCTATATA-AT--AA-GTATCGATAC-TTATGTTTACGCCTATTATCATTATACC
* * *
13616 GGTAGATTGTTACTGTTTACATTGTAAATTTACCTATTACTTTAAAGTAATACATTTCGAAATTC
61 GGTAGATTTTTACCGTTTACATTGTAAATTTA-CTATTACTTTAAAGTAAT-CGTTTCGAAATT-
* *
13681 AAAGTATCGAAACTTT
123 TAAGTATCGATACTTT
13697 GTTGCGGAAA
Statistics
Matches: 628, Mismatches: 96, Indels: 39
0.82 0.13 0.05
Matches are distributed among these distances:
198 5 0.01
199 65 0.10
200 438 0.70
201 13 0.02
202 9 0.01
203 98 0.16
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.41
Consensus pattern (196 bp):
AGTATCGATACCTATATAATAAGTATCGATACTTATGTTTACGCCTATTATCATTATACCGGTAG
ATTTTTACCGTTTACATTGTAAATTTACTATTACTTTAAAGTAATCGTTTCGAAATTTAAGTATC
GATACTTTATACATGTGTATCGATACTTTTTGCATGCAAATTGTTTGAGATGCATACTAGAATAA
C
Found at i:13504 original size:400 final size:399
Alignment explanation
Indices: 12752--13698 Score: 1181
Period size: 400 Copynumber: 2.4 Consensus size: 399
12742 TCGAAATTCT
* * * * *
12752 AAGTATCGATACCTATATAATAAGTATCGATACTTGATGTTTATGACTATTATCATTATATCGGT
1 AAGTATCGATACCTATATAATAAGTATCGATACTTTATGTTTACGCCTATTATCATTAAACCGGT
* * ** * **
12817 AGACTTTTACCG-TTACATTGTAAATTTACATATTACTTTAAAGAAATATGTTTCTAAATTACGG
66 AGATTTTTACCGTTTACATTGTAAATTTACATATTACTTTAAAGTAATACATTTCAAAATT-CAA
* * *
12881 GTATCGATACTTTGTACATGTGTATCGATATTTTTTGCATGCAAATTGTTTGAGATGCATACTAG
130 GTATCGATACTTTGTACACGTGTATCGATACTTTTTGCATGCAAATTGTTTGAGATACATACTAG
* ** *
12946 AATAACAGTATCGATACCTATATATAAAGTATTTATACTTGGTATTTACGTCTATTATCAATATA
195 AATAACAATATCGATACCTATATATAAAGTATCGATACTTGATATTTACGTCTATTATCAATATA
* * * * *
13011 CCAACATATTTTTACCGTTTACATTGTAAATTTATCTATTACTTTAAAGTAATCGGTTTCGAAAT
260 ACAACAGATTTTTACCGTTTACATTATAAATCTATCTATTACTTTAAAGTAATAGGTTTCGAAAT
* *
13076 TTAACATATCGATACTTTATACATGTGTATCGATACTTTTTGCGTGCAAATTATTTGAGATGCAT
325 TTAACATATCAATACTTTATACATGTGTATCGATACTTTGTGCGTGCAAATTATTTGAGATGCAT
13141 ACTGGAATAA
390 ACTGGAATAA
* * *
13151 CAGTATTGATACCTATATAATAAGTATCGATACTTTATGTTTACGCCTATTATCATTAAACCAGT
1 AAGTATCGATACCTATATAATAAGTATCGATACTTTATGTTTACGCCTATTATCATTAAACCGGT
* *
13216 AGATTTTTACCGTTTACATTGTCAATTTACGTATTACTTTAAAGTAATACATTTCAAAATTCTAA
66 AGATTTTTACCGTTTACATTGTAAATTTACATATTACTTTAAAGTAATACATTTCAAAATTC-AA
* * *
13281 GTATCGATAC-TTGTTATACGTGTATCGATACTTTTTGCATGCAAATTGTTTGAGATATATATTA
130 GTATCGATACTTTG-TACACGTGTATCGATACTTTTTGCATGCAAATTGTTTGAGATACATACTA
* * *
13345 GAATAACAATATCGATACCTATATA-ATAAGTATCGATACGTT-ATGTTTATG-CATATTATCAT
194 GAATAACAATATCGATACCTATATATA-AAGTATCGATAC-TTGATATTTACGTC-TATTATCAA
**** * * * * *
13407 TATAATGGTAGATTTTTATCGTTTACATTATAAATCTATGTATTACTTTAATGTAATATGTTTTG
256 TATAACAACAGATTTTTACCGTTTACATTATAAATCTATCTATTACTTTAAAGTAATAGGTTTCG
* * * *
13472 AAATTCTAA-GTATCAATACTTGT-TATATGTGTATCGATACTTTGTGCGTGTAAATTGTTTGAG
321 AAATT-TAACATATCAATACTT-TATACATGTGTATCGATACTTTGTGCGTGCAAATTATTTGAG
* *
13535 ATTCATATTGGAATAA
384 ATGCATACTGGAATAA
* * *
13551 AAGTATCGATACATA-AAACATAAAAGGTATCGATACTTTAAGTTTACGCCTATTATCATTAAAC
1 AAGTATCGATACCTATATA-AT--AA-GTATCGATACTTTATGTTTACGCCTATTATCATTAAAC
* * * *
13615 CGGTAGATTGTTACTGTTTACATTGTAAATTTACCTATTACTTTAAAGTAATACATTTCGAAATT
62 CGGTAGATTTTTACCGTTTACATTGTAAATTTACATATTACTTTAAAGTAATACATTTCAAAATT
*
13680 CAAAGTATCGAAACTTTGT
127 C-AAGTATCGATACTTTGT
13699 TGCGGAAAAA
Statistics
Matches: 470, Mismatches: 65, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
399 76 0.16
400 274 0.58
401 6 0.01
402 2 0.00
403 109 0.23
404 3 0.01
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.41
Consensus pattern (399 bp):
AAGTATCGATACCTATATAATAAGTATCGATACTTTATGTTTACGCCTATTATCATTAAACCGGT
AGATTTTTACCGTTTACATTGTAAATTTACATATTACTTTAAAGTAATACATTTCAAAATTCAAG
TATCGATACTTTGTACACGTGTATCGATACTTTTTGCATGCAAATTGTTTGAGATACATACTAGA
ATAACAATATCGATACCTATATATAAAGTATCGATACTTGATATTTACGTCTATTATCAATATAA
CAACAGATTTTTACCGTTTACATTATAAATCTATCTATTACTTTAAAGTAATAGGTTTCGAAATT
TAACATATCAATACTTTATACATGTGTATCGATACTTTGTGCGTGCAAATTATTTGAGATGCATA
CTGGAATAA
Found at i:14845 original size:21 final size:20
Alignment explanation
Indices: 14799--14899 Score: 134
Period size: 20 Copynumber: 5.0 Consensus size: 20
14789 CCGTTAGATA
*
14799 GGGGGAATATGTA-CCCC-G
1 GGGGGAATCTGTACCCCCTG
*
14817 GAGGGGAATCGGTACCCCCTGG
1 G-GGGGAATCTGTACCCCCT-G
* *
14839 GGGGGAATCTGTTCCTCCTG
1 GGGGGAATCTGTACCCCCTG
14859 GGGGGAATCTGTACCCCCTG
1 GGGGGAATCTGTACCCCCTG
14879 GGGGGAATCTGTACCCCCTG
1 GGGGGAATCTGTACCCCCTG
14899 G
1 G
14900 ACAATATGAT
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
18 1 0.01
19 10 0.14
20 44 0.61
21 15 0.21
22 2 0.03
ACGTcount: A:0.16, C:0.27, G:0.38, T:0.20
Consensus pattern (20 bp):
GGGGGAATCTGTACCCCCTG
Found at i:19529 original size:21 final size:21
Alignment explanation
Indices: 19503--19577 Score: 123
Period size: 21 Copynumber: 3.6 Consensus size: 21
19493 GTTTCCAGAT
* *
19503 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTGGACTA
19524 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
*
19545 TTGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTA
19566 TCGCAATGCGAA
1 TCGCAATGCGAA
19578 TATGTAAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAACTTGGACTA
Found at i:19616 original size:21 final size:21
Alignment explanation
Indices: 19586--19660 Score: 123
Period size: 21 Copynumber: 3.6 Consensus size: 21
19576 AATATGTAAA
*
19586 TCGCAATGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCGAAGT
*
19607 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCGAAGT
19628 TCGCATTGCGATAGTCGAAGT
1 TCGCATTGCGATAGTCGAAGT
*
19649 TCGCGTTGCGAT
1 TCGCATTGCGAT
19661 TTTCCAAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 50 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (21 bp):
TCGCATTGCGATAGTCGAAGT
Found at i:19667 original size:42 final size:42
Alignment explanation
Indices: 19586--19672 Score: 129
Period size: 42 Copynumber: 2.1 Consensus size: 42
19576 AATATGTAAA
*
19586 TCGCAATGCGATAGTCGAAGTTCGCATTGCGATAGTCCAAGT
1 TCGCAATGCGATAGTCGAAGTTCGCATTGCGATAGTCCAAAT
* * **
19628 TCGCATTGCGATAGTCGAAGTTCGCGTTGCGATTTTCCAAAT
1 TCGCAATGCGATAGTCGAAGTTCGCATTGCGATAGTCCAAAT
19670 TCG
1 TCG
19673 ACTATCACAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (42 bp):
TCGCAATGCGATAGTCGAAGTTCGCATTGCGATAGTCCAAAT
Found at i:20620 original size:21 final size:21
Alignment explanation
Indices: 20596--20664 Score: 111
Period size: 21 Copynumber: 3.3 Consensus size: 21
20586 AATTTAGAAA
20596 ATCGCAACGCGAACTTCGACT
1 ATCGCAACGCGAACTTCGACT
* *
20617 ATCGCAATGCGAACTTGGACT
1 ATCGCAACGCGAACTTCGACT
*
20638 ATCGCAACGCGAACTTTGACT
1 ATCGCAACGCGAACTTCGACT
20659 ATCGCA
1 ATCGCA
20665 TTGCGATTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (21 bp):
ATCGCAACGCGAACTTCGACT
Found at i:20705 original size:21 final size:21
Alignment explanation
Indices: 20679--20732 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
20669 GATTTATATA
20679 TTCGCATTGCGATAATCCAAG
1 TTCGCATTGCGATAATCCAAG
* *
20700 TTCGCATTGCGATAGTCGAAG
1 TTCGCATTGCGATAATCCAAG
*
20721 TTCGCGTTGCGA
1 TTCGCATTGCGA
20733 ATCTAGAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (21 bp):
TTCGCATTGCGATAATCCAAG
Found at i:21621 original size:187 final size:184
Alignment explanation
Indices: 21302--21640 Score: 468
Period size: 187 Copynumber: 1.8 Consensus size: 184
21292 TTAAAGTACC
*
21302 GATACTATGGTACATATACTTATAAAAGTATCGATACCGTCAACATATCTGATAGCGCTTTACCA
1 GATACTATGGTACATATACTTATAAAAGTATCGATACCGTCAACATATCAGATAGCGCTTTACCA
* * * *
21367 GTTTTGTCAAATTAAAATCGGTTTTGTCAAATTTCAATATGTTATATTGTCATGTATCGATACAT
66 GCTTTGTCAAATTAAAACCAGTTTTGTCAAATTTCAATATGTTATATTATCATGTATCGATACAT
21432 GTGTCTAAGGTATCGATACTTTATAAGCAATATTATTGCAATTCCTAGAGTATT
131 GTGTCTAAGGTATCGATACTTTATAAGCAATATTATTGCAATTCCTAGAGTATT
* * ** *
21486 GATACTTTGGTACATATATTTATAAAAGTATCGATACAAATTTCAACCAT-TCCAG-TAGCTCTT
1 GATACTATGGTACATATACTTATAAAAGTATCGATAC---CGTCAA-CATAT-CAGATAGCGCTT
** * *
21549 TACTGGCTTTGTCAAATTGAAACCAGTTTTGTTAAATTTCAACT-TGTTATATTATCATGTATCG
61 TACCAGCTTTGTCAAATTAAAACCAGTTTTGTCAAATTTCAA-TATGTTATATTATCATGTATCG
*
21613 ATACATGTGTGTAAGGTATCGATACTTT
125 ATACATGTGTCTAAGGTATCGATACTTT
21641 CGAGACATTT
Statistics
Matches: 134, Mismatches: 15, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
184 35 0.26
187 93 0.69
188 6 0.04
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (184 bp):
GATACTATGGTACATATACTTATAAAAGTATCGATACCGTCAACATATCAGATAGCGCTTTACCA
GCTTTGTCAAATTAAAACCAGTTTTGTCAAATTTCAATATGTTATATTATCATGTATCGATACAT
GTGTCTAAGGTATCGATACTTTATAAGCAATATTATTGCAATTCCTAGAGTATT
Found at i:21799 original size:20 final size:20
Alignment explanation
Indices: 21776--21814 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
21766 AAATTGAAAT
21776 CGATTTTATCAAATTTCAAC
1 CGATTTTATCAAATTTCAAC
* *
21796 CGATTTTTTCAATTTTCAA
1 CGATTTTATCAAATTTCAA
21815 TCGGTTTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.18, G:0.05, T:0.46
Consensus pattern (20 bp):
CGATTTTATCAAATTTCAAC
Found at i:23014 original size:44 final size:44
Alignment explanation
Indices: 22957--23040 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
22947 CAAAATTTTC
*
22957 TAATTTACAAATAAATAATAAAAAAT-TATAAATTATTAATCTAA
1 TAATTTACAAATAAATAATAAAAAATAT-TAAACTATTAATCTAA
* * * *
23001 TAATTTTCTAATAAATATTTAAAAATATTAAACTATTAAT
1 TAATTTACAAATAAATAATAAAAAATATTAAACTATTAAT
23041 TATTATTACA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 33 0.97
45 1 0.03
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (44 bp):
TAATTTACAAATAAATAATAAAAAATATTAAACTATTAATCTAA
Found at i:23041 original size:36 final size:37
Alignment explanation
Indices: 22972--23041 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 37
22962 TACAAATAAA
* *
22972 TAATAAAAAATTATAAATTATTAATCTAATAATTTTC
1 TAATAAAAAATTATAAAATATTAAACTAATAATTTTC
* * *
23009 TAATAAATATTTA-AAAATATTAAACTATTAATT
1 TAATAAAAAATTATAAAATATTAAACTAATAATT
23042 ATTATTACAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
36 17 0.61
37 11 0.39
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (37 bp):
TAATAAAAAATTATAAAATATTAAACTAATAATTTTC
Found at i:23450 original size:23 final size:23
Alignment explanation
Indices: 23418--23468 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
23408 AAAATATAAA
*
23418 ATAATTATATATATT-TAATTATT
1 ATAATGATAT-TATTATAATTATT
* *
23441 ATAATGATATTATTATTATTCTT
1 ATAATGATATTATTATAATTATT
23464 ATAAT
1 ATAAT
23469 AAATGATACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (23 bp):
ATAATGATATTATTATAATTATT
Found at i:23497 original size:29 final size:30
Alignment explanation
Indices: 23457--23566 Score: 105
Period size: 32 Copynumber: 3.5 Consensus size: 30
23447 ATATTATTAT
*
23457 TATTCTTATAATAAATGAT-ACATTTAATAA
1 TATT-TTATAATAAATGATAAAATTTAATAA
* *
23487 TATTTTATAATAACTGAATAAAATTTAATTAT
1 TATTTTATAATAAATG-ATAAAATTTAA-TAA
**
23519 TATTGCATAATAAATTGATAAAATTTAATAA
1 TATTTTATAATAAA-TGATAAAATTTAATAA
*
23550 TTATTTATACAATAAAT
1 -TATTT-TATAATAAAT
23567 TTAATAGTTT
Statistics
Matches: 64, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
29 11 0.17
30 6 0.09
31 9 0.14
32 29 0.45
33 9 0.14
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.44
Consensus pattern (30 bp):
TATTTTATAATAAATGATAAAATTTAATAA
Found at i:23905 original size:20 final size:20
Alignment explanation
Indices: 23855--23893 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
23845 GAAATAAATA
23855 ACTTAGAATTTTATGTTAAG
1 ACTTAGAATTTTATGTTAAG
23875 ACTTAGAATTTTATGTTAA
1 ACTTAGAATTTTATGTTAA
23894 AGATATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.05, G:0.13, T:0.46
Consensus pattern (20 bp):
ACTTAGAATTTTATGTTAAG
Found at i:25137 original size:21 final size:21
Alignment explanation
Indices: 25022--25137 Score: 51
Period size: 21 Copynumber: 5.6 Consensus size: 21
25012 GCGAAATAAA
**
25022 AATCGCAACGCGA-TCCCCAG
1 AATCGCAACGCGATTTTCCAG
** * *
25042 AATCGCAAATC-AGTTTCCAA
1 AATCGCAACGCGATTTTCCAG
* *
25062 AATCGCAACGCGATTCTT-GAC
1 AATCGCAACGCGATT-TTCCAG
** ** *
25083 AATCGCAATACGATAGTACA-
1 AATCGCAACGCGATTTTCCAG
**
25103 AATTCGCATTGCGATTTTCCAG
1 AA-TCGCAACGCGATTTTCCAG
25125 AATCGCAACGCGA
1 AATCGCAACGCGA
25138 ATATGAAAAT
Statistics
Matches: 68, Mismatches: 22, Indels: 11
0.67 0.22 0.11
Matches are distributed among these distances:
19 1 0.01
20 25 0.37
21 38 0.56
22 4 0.06
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.22
Consensus pattern (21 bp):
AATCGCAACGCGATTTTCCAG
Found at i:25219 original size:20 final size:20
Alignment explanation
Indices: 25125--25315 Score: 210
Period size: 20 Copynumber: 9.6 Consensus size: 20
25115 GATTTTCCAG
* ** *
25125 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
25145 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
25165 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
25185 AATCGCAACGTGTATCCATA
1 AATCGCAACGCGTATCCGTA
25205 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
25225 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
25245 TATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
25265 AATCGC--CGAC-AATACGTAA
1 AATCGCAACG-CGTATCCGT-A
25284 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
25304 AATCGCAACGCG
1 AATCGCAACGCG
25316 ATTTTTAAAG
Statistics
Matches: 145, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
18 6 0.04
19 9 0.06
20 121 0.83
21 9 0.06
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:25734 original size:33 final size:33
Alignment explanation
Indices: 25695--25765 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
25685 TTCACTTAGA
25695 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
25728 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
25761 TTTCA
1 TTTCA
25766 AGTTAGTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.11, C:0.24, G:0.17, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:25871 original size:21 final size:20
Alignment explanation
Indices: 25845--25953 Score: 97
Period size: 21 Copynumber: 5.7 Consensus size: 20
25835 TGCAGAAGAG
25845 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGA-AAATGAAAA
* **
25866 TCGCAACGTGAAAATGACTA
1 TCGCAACGAGAAAATGAAAA
25886 TCTGCAACGAGAAAAATGAAAA
1 TC-GCAACGAG-AAAATGAAAA
25908 TCGCAACGAG---A-G--AA
1 TCGCAACGAGAAAATGAAAA
*
25922 TCGCAACGCG-AAATGAAAA
1 TCGCAACGAGAAAATGAAAA
*
25941 TCGCAACGCGAAA
1 TCGCAACGAGAAA
25954 CCAAAATCGC
Statistics
Matches: 73, Mismatches: 7, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
14 11 0.15
16 2 0.03
17 2 0.03
19 12 0.16
20 11 0.15
21 25 0.34
22 10 0.14
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.13
Consensus pattern (20 bp):
TCGCAACGAGAAAATGAAAA
Found at i:25944 original size:19 final size:19
Alignment explanation
Indices: 25857--25964 Score: 82
Period size: 19 Copynumber: 5.7 Consensus size: 19
25847 GCAACGAGAT
*
25857 AAATGAAAATCGCAACGTG
1 AAATGAAAATCGCAACGCG
** *
25876 AAAATGACTATCTGCAACGAG
1 -AAATGAAAATC-GCAACGCG
25897 AAAAATGAAAATCGCAA--CG
1 --AAATGAAAATCGCAACGCG
*
25916 --A-GAGAATCGCAACGCG
1 AAATGAAAATCGCAACGCG
25932 AAATGAAAATCGCAACGCG
1 AAATGAAAATCGCAACGCG
**
25951 AAACCAAAATCGCA
1 AAATGAAAATCGCA
25965 TTGCGATTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
18 1 0.01
19 27 0.38
20 9 0.13
21 11 0.15
22 10 0.14
ACGTcount: A:0.48, C:0.20, G:0.19, T:0.12
Consensus pattern (19 bp):
AAATGAAAATCGCAACGCG
Found at i:25982 original size:19 final size:19
Alignment explanation
Indices: 25960--26087 Score: 87
Period size: 19 Copynumber: 7.1 Consensus size: 19
25950 GAAACCAAAA
*
25960 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
25979 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
25993 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
26012 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
26026 TCTCGTTGCGATTTTCATTT
1 TCGCGTTGCGATTTTCA-TT
* ***
26046 CTCTCGTTGCGACAGTCATT
1 -TCGCGTTGCGATTTTCATT
*
26066 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
26086 TC
1 TC
26088 AACCAAAAGA
Statistics
Matches: 87, Mismatches: 10, Indels: 24
0.72 0.08 0.20
Matches are distributed among these distances:
14 20 0.23
16 6 0.07
17 6 0.07
19 22 0.25
20 19 0.22
21 14 0.16
ACGTcount: A:0.11, C:0.25, G:0.19, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:26001 original size:14 final size:14
Alignment explanation
Indices: 25982--26038 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
25972 TTTCATTTCG
25982 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
25996 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
26015 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
26029 CGTTGCGATT
1 CGTTGCGATT
26039 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:26007 original size:33 final size:33
Alignment explanation
Indices: 25965--26087 Score: 165
Period size: 33 Copynumber: 3.5 Consensus size: 33
25955 CAAAATCGCA
25965 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
25998 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
26031 TTGCGATTTTCATTTCTCTCGTTGCGACAGTCATTCTCTCG
1 TTGCGATTTTCA-TT-TCGCGTT--G-C-G--ATTCTCTCG
26072 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
26088 AACCAAAAGA
Statistics
Matches: 81, Mismatches: 1, Indels: 10
0.88 0.01 0.11
Matches are distributed among these distances:
33 45 0.56
34 2 0.02
35 6 0.07
37 1 0.01
38 1 0.01
39 3 0.04
40 2 0.02
41 21 0.26
ACGTcount: A:0.11, C:0.24, G:0.19, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:26049 original size:21 final size:21
Alignment explanation
Indices: 26023--26087 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
26013 CGCGTTGCGA
26023 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
26044 TTCTCTCGTTGCGACAGTCA-
1 TTCTCTCGTTGCGATTTTCAT
26064 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
26085 TTC
1 TTC
26088 AACCAAAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.11, C:0.26, G:0.15, T:0.48
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:27927 original size:93 final size:93
Alignment explanation
Indices: 27768--27990 Score: 437
Period size: 93 Copynumber: 2.4 Consensus size: 93
27758 TAGATTGCTT
*
27768 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
27833 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
27861 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
27926 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
27954 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
27991 AATACCCTGA
Statistics
Matches: 129, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 129 1.00
ACGTcount: A:0.22, C:0.14, G:0.19, T:0.45
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:28125 original size:14 final size:14
Alignment explanation
Indices: 28106--28162 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
28096 CGAAACTTAA
28106 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
28120 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
28139 AATCGCAACGACAG
1 AATCGCAACGAGAG
28153 AATCGCAACG
1 AATCGCAACG
28163 CGAAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 19 0.54
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.44, C:0.25, G:0.23, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:28146 original size:33 final size:33
Alignment explanation
Indices: 28088--28178 Score: 128
Period size: 33 Copynumber: 2.7 Consensus size: 33
28078 TAGTTTACTT
* * *
28088 TCGCAACACGAAACTTAAAATCGCAACGAGAGAA
1 TCGCAACGCGAAA-TCAAAATCGCAACGACAGAA
*
28122 TCGCAACGCGAAATGAAAATCGCAACGACAGAA
1 TCGCAACGCGAAATCAAAATCGCAACGACAGAA
*
28155 TCGCAACGCGAAACCAAAATCGCA
1 TCGCAACGCGAAATCAAAATCGCA
28179 TTGCGATTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
33 40 0.77
34 12 0.23
ACGTcount: A:0.45, C:0.26, G:0.19, T:0.10
Consensus pattern (33 bp):
TCGCAACGCGAAATCAAAATCGCAACGACAGAA
Found at i:28177 original size:19 final size:18
Alignment explanation
Indices: 28120--28178 Score: 54
Period size: 19 Copynumber: 3.4 Consensus size: 18
28110 GCAACGAGAG
*
28120 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAA-CAA
*
28139 AATCGCAA--CG--ACAG
1 AATCGCAACGCGAAACAA
28153 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAA-CAA
28172 AATCGCA
1 AATCGCA
28179 TTGCGATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 9 0.28
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 17 0.53
ACGTcount: A:0.46, C:0.27, G:0.19, T:0.08
Consensus pattern (18 bp):
AATCGCAACGCGAAACAA
Found at i:28196 original size:19 final size:19
Alignment explanation
Indices: 28174--28346 Score: 150
Period size: 19 Copynumber: 9.6 Consensus size: 19
28164 GAAACCAAAA
*
28174 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
28193 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
28207 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
28226 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
28242 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
28259 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
* **
28278 TCACGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
* *
28297 TCTCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATT
*
28316 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
28336 TCGTGTTGCGA
1 TCGCGTTGCGA
28347 AAGTAAACTA
Statistics
Matches: 125, Mismatches: 18, Indels: 21
0.76 0.11 0.13
Matches are distributed among these distances:
14 17 0.14
16 8 0.06
17 8 0.06
19 80 0.64
20 12 0.10
ACGTcount: A:0.11, C:0.20, G:0.23, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:28215 original size:14 final size:14
Alignment explanation
Indices: 28196--28252 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
28186 TTTCATTTCG
28196 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
28210 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TCT
*
28227 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTCT
28243 CGTTGCGATT
1 CGTTGCGATT
28253 TTCATTTCGC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 16 0.44
16 7 0.19
17 7 0.19
19 6 0.17
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:28221 original size:33 final size:33
Alignment explanation
Indices: 28179--28271 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
28169 CAAAATCGCA
28179 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
28212 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
28245 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
28272 TTGGTTTCAC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:28304 original size:38 final size:38
Alignment explanation
Indices: 28179--28346 Score: 158
Period size: 33 Copynumber: 4.7 Consensus size: 38
28169 CAAAATCGCA
28179 TTGCGATTTTCATTTCGCGTTGCGATTCTC---T--CG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCATTTCACG
* *
28212 TTGCGATTTTCATTTCGCATTGCGA-T-TC-TGT--CG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCATTTCACG
* **
28245 TTGCGATTTTCATTTCGCGTTGCGATTTTGGTTTCACG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCATTTCACG
** * *
28283 TTGCGATTTTGGTTTCTCGTTGCGATTCTCATTTCGCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCATTTCACG
* *
28321 TTGCGATTTTAAGTTTCGTGTTGCGA
1 TTGCGATTTTCA-TTTCGCGTTGCGA
28347 AAGTAAACTA
Statistics
Matches: 112, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
31 2 0.02
32 1 0.01
33 51 0.46
34 1 0.01
35 1 0.01
36 2 0.02
38 43 0.38
39 11 0.10
ACGTcount: A:0.11, C:0.20, G:0.23, T:0.46
Consensus pattern (38 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCATTTCACG
Found at i:28824 original size:21 final size:21
Alignment explanation
Indices: 28800--28866 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
28790 TCATTCCTCG
*
28800 AGAGTCCCCTCCCACCATTCA
1 AGAGTCCCCTCACACCATTCA
* * ** * *
28821 AGAGGCCACTGTCATCATTGA
1 AGAGTCCCCTCACACCATTCA
28842 AGAGGT-CCCTCACACCATTCA
1 AGA-GTCCCCTCACACCATTCA
28863 AGAG
1 AGAG
28867 CCCGATTCAC
Statistics
Matches: 33, Mismatches: 12, Indels: 3
0.69 0.25 0.06
Matches are distributed among these distances:
20 1 0.03
21 31 0.94
22 1 0.03
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCACACCATTCA
Found at i:30291 original size:14 final size:14
Alignment explanation
Indices: 30272--30305 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
30262 ATTGTTTAAT
30272 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
30286 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
30300 TGATTT
1 TGATTT
30306 TTGTAATTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:30422 original size:19 final size:19
Alignment explanation
Indices: 30398--30485 Score: 123
Period size: 19 Copynumber: 4.8 Consensus size: 19
30388 GCATTATGTT
30398 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAATGC
30417 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAATGC
*
30434 G--A-GATAATCGCAATGC
1 GAAATGAAAATCGCAATGC
30450 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAATGC
30469 GGAAATGAAAATCGCAA
1 -GAAATGAAAATCGCAA
30486 CGAGAGAATC
Statistics
Matches: 61, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
14 10 0.16
15 1 0.02
16 2 0.03
17 2 0.03
18 1 0.02
19 29 0.48
20 16 0.26
ACGTcount: A:0.48, C:0.16, G:0.22, T:0.15
Consensus pattern (19 bp):
GAAATGAAAATCGCAATGC
Found at i:30517 original size:53 final size:53
Alignment explanation
Indices: 30398--30504 Score: 198
Period size: 53 Copynumber: 2.0 Consensus size: 53
30388 GCATTATGTT
*
30398 GAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGATAATCGCAATGC
1 GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGC
30450 GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGC
1 GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGC
30503 GA
1 GA
30505 TTTTCATTTC
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
52 19 0.36
53 34 0.64
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.14
Consensus pattern (53 bp):
GAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGC
Found at i:30581 original size:72 final size:69
Alignment explanation
Indices: 30495--30788 Score: 280
Period size: 72 Copynumber: 4.2 Consensus size: 69
30485 ACGAGAGAAT
*
30495 CGCAATGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATT
1 CGCATTGCGATTTTC-TTTCG--TTGCGATTTTCATTT-CGCATTGCGATTCTCTCGTTGCGATT
30560 TTCATTT-
62 TTCATTTC
* * * * *
30567 CGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCGCATTGCGA
1 CGCATTGCGATTTTC-TTTCG--TTGCGATT-T-TCATTTCGCA-TTGCGATTCTCTCGTTGCGA
30629 TTTTCATTTC
60 TTTTCATTTC
* *
30639 CGCATTGCGA--TTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGAT
1 CGCATTGCGATTTTCTTTCGTTGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG--TTGCGAT
30702 TTTCATTTC
61 TTTCATTTC
* * *
30711 CGCATTGCGATTTTC-TT-GTTGGGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTGTAA
1 CGCATTGCGATTTTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCA
30774 TTTC
66 TTTC
**
30778 CGTGTTGCGAT
1 CGCATTGCGAT
30789 AGTCAAATGC
Statistics
Matches: 188, Mismatches: 20, Indels: 33
0.78 0.08 0.14
Matches are distributed among these distances:
65 9 0.05
66 3 0.02
67 31 0.16
68 2 0.01
69 8 0.04
70 8 0.04
71 18 0.10
72 95 0.51
73 7 0.04
74 7 0.04
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.45
Consensus pattern (69 bp):
CGCATTGCGATTTTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCA
TTTC
Found at i:30620 original size:105 final size:109
Alignment explanation
Indices: 30500--30769 Score: 434
Period size: 105 Copynumber: 2.6 Consensus size: 109
30490 AGAATCGCAA
30500 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
30565 TTCGCATTGCGATTTTCATTTCGCATTGCGA-TTC-TCT-CG-T
66 TTCGCATTGCGATTTTCATTTCGCATTGCGATTTCATCTCCGAT
30605 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
*
30670 TTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCAT
66 TTCGCATTGCGATTTTCATTTCGCATTGCGA-TTTCATCTCCG-AT
*
30716 TGCGATTTTC--TT-G--TTGGGATTTTCATTT-CGCATTGCGATTCTCTCGTTGCGATT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATT
30770 GTAATTTCCG
Statistics
Matches: 157, Mismatches: 2, Indels: 12
0.92 0.01 0.07
Matches are distributed among these distances:
105 122 0.78
106 14 0.09
107 3 0.02
108 3 0.02
109 4 0.03
111 11 0.07
ACGTcount: A:0.13, C:0.23, G:0.18, T:0.46
Consensus pattern (109 bp):
TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCAT
TTCGCATTGCGATTTTCATTTCGCATTGCGATTTCATCTCCGAT
Found at i:30784 original size:53 final size:52
Alignment explanation
Indices: 30500--30769 Score: 415
Period size: 53 Copynumber: 5.1 Consensus size: 52
30490 AGAATCGCAA
30500 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGATTCTCTCGT
30553 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
30605 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGATTCTCTCGT
*
30658 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCAT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TTC-TCT-CG--T
*
30716 TGCGATTTTC--TT-G--TTGGGATTTTCATTTCGCATTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
30763 TGCGATT
1 TGCGATT
30770 GTAATTTCCG
Statistics
Matches: 207, Mismatches: 3, Indels: 20
0.90 0.01 0.09
Matches are distributed among these distances:
47 8 0.04
49 2 0.01
50 2 0.01
51 3 0.01
52 62 0.30
53 109 0.53
54 3 0.01
55 3 0.01
56 4 0.02
58 11 0.05
ACGTcount: A:0.13, C:0.23, G:0.18, T:0.46
Consensus pattern (52 bp):
TGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGT
Found at i:31427 original size:20 final size:20
Alignment explanation
Indices: 31399--31627 Score: 235
Period size: 20 Copynumber: 11.4 Consensus size: 20
31389 AAATTTCAGT
* * *
31399 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
31419 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
31439 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
31459 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
*
31479 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
31499 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
31519 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* * *
31539 GTTGCTATTTACGGATACAC
1 GTTGCGATTTACGGATTCGC
* *
31559 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
31579 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
* **
31599 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCGC
31619 GTTGCGATT
1 GTTGCGATT
31628 CTTGAAAATC
Statistics
Matches: 181, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
20 180 0.99
21 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.26, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:31680 original size:21 final size:20
Alignment explanation
Indices: 31595--31692 Score: 81
Period size: 21 Copynumber: 4.8 Consensus size: 20
31585 ATTTATGTGT
* *
31595 TCGCGTTGCGATTTTCATAT
1 TCGCGTTGCGATTTTCAAAA
*
31615 TCGCGTTGCGATTCTTGAAAA
1 TCGCGTTGCGATT-TTCAAAA
** **
31636 TCGCAATGCGAATTTGT-ACTA
1 TCGCGTTGCG-ATTT-TCAAAA
*
31657 TCGCATTGCGATTTTCAAGAA
1 TCGCGTTGCGATTTTCAA-AA
31678 TCGCGTTGCGATTTT
1 TCGCGTTGCGATTTT
31693 GGAAACTGAT
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
19 1 0.02
20 18 0.29
21 39 0.63
22 4 0.06
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCAAAA
Found at i:31688 original size:42 final size:43
Alignment explanation
Indices: 31595--31693 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
31585 ATTTATGTGT
* *
31595 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTCTTGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTCTTCAAAA
**
31636 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATT-TTCAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTCTTCAA-AA
*
31678 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
31694 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 12 0.26
42 32 0.68
43 3 0.06
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTCTTCAAAA
Found at i:34446 original size:32 final size:32
Alignment explanation
Indices: 34405--34477 Score: 101
Period size: 32 Copynumber: 2.3 Consensus size: 32
34395 TCGACTCGTG
*
34405 CTCGTTAAGAAAACTTATTGCTCAATTCGTTA
1 CTCGTTAAGAAAACTTATTGCTCAACTCGTTA
* * *
34437 CTCGTTAAGAAAACTTGTTGCTCGACTCGTTG
1 CTCGTTAAGAAAACTTATTGCTCAACTCGTTA
*
34469 CTAGTTAAG
1 CTCGTTAAG
34478 CTCGTTGAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (32 bp):
CTCGTTAAGAAAACTTATTGCTCAACTCGTTA
Found at i:40196 original size:17 final size:18
Alignment explanation
Indices: 40163--40197 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
40153 TTTGACCAGT
*
40163 TCGACCCGACCTGTTGAC
1 TCGACCCGACATGTTGAC
40181 TCGACCCGA-ATGTTGAC
1 TCGACCCGACATGTTGAC
40198 CGTTGACCGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.20, C:0.34, G:0.23, T:0.23
Consensus pattern (18 bp):
TCGACCCGACATGTTGAC
Found at i:40241 original size:29 final size:28
Alignment explanation
Indices: 40207--40362 Score: 133
Period size: 29 Copynumber: 5.6 Consensus size: 28
40197 CCGTTGACCG
40207 GGTGATATTTTAGTAATTATTTTGAAAA
1 GGTGATATTTTAGTAATTATTTTGAAAA
*
40235 TGGTGATATTTTGGTAATTATTTTGAAAA
1 -GGTGATATTTTAGTAATTATTTTGAAAA
* * * * * *
40264 AGTGCTACTTTCGTAAATTTTTTTTAAAA
1 GGTGATATTTTAGT-AATTATTTTGAAAA
* * *
40293 -ATGATAAATTCA-TAATT-TTTT-AAAA
1 GGTGAT-ATTTTAGTAATTATTTTGAAAA
*
40318 AGTGATATTTTAGTAATTATTTTGAAAA
1 GGTGATATTTTAGTAATTATTTTGAAAA
40346 TGGTGATATATTT-GTAA
1 -GGTGATAT-TTTAGTAA
40363 ATTTTTTAAA
Statistics
Matches: 103, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
25 8 0.08
26 13 0.13
27 8 0.08
28 18 0.17
29 53 0.51
30 3 0.03
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.47
Consensus pattern (28 bp):
GGTGATATTTTAGTAATTATTTTGAAAA
Found at i:40383 original size:30 final size:28
Alignment explanation
Indices: 40207--40393 Score: 83
Period size: 29 Copynumber: 6.6 Consensus size: 28
40197 CCGTTGACCG
*
40207 GGTGATAT-TTTAGT-AATTATTTTGAAAAT
1 GGTGATATATTT-GTAAATT-TTTT-AAAAA
40236 GGTGATAT-TTTGGT-AATTATTTTGAAAAA
1 GGTGATATATTT-GTAAATT-TTTT-AAAAA
* *
40265 -GTGCTACT-TTCGTAAATTTTTTTTAAAAA
1 GGTGATA-TATTTGTAAA--TTTTTTAAAAA
* **
40294 --TGATAAATTCAT-AATTTTTTAAAAA
1 GGTGATATATTTGTAAATTTTTTAAAAA
*
40319 -GTGATAT-TTTAGT-AATTATTTTGAAAAT
1 GGTGATATATTT-GTAAATT-TTTT-AAAAA
40347 GGTGATATATTTGTAAATTTTTTAAAAAA
1 GGTGATATATTTGTAAATTTTTT-AAAAA
* *
40376 GGGTGATAAATGTGTAAA
1 -GGTGATATATTTGTAAA
40394 ATGGTTGATC
Statistics
Matches: 130, Mismatches: 15, Indels: 25
0.76 0.09 0.15
Matches are distributed among these distances:
25 13 0.10
26 10 0.08
27 6 0.05
28 19 0.15
29 54 0.42
30 26 0.20
31 2 0.02
ACGTcount: A:0.37, C:0.02, G:0.16, T:0.45
Consensus pattern (28 bp):
GGTGATATATTTGTAAATTTTTTAAAAA
Found at i:47585 original size:29 final size:27
Alignment explanation
Indices: 47482--47619 Score: 88
Period size: 28 Copynumber: 5.0 Consensus size: 27
47472 TTTGAATATG
47482 GTGATAT-TTTGGT-AATTATTTTGAAAAA
1 GTGATATATTT-GTAAATT-TTTT-AAAAA
* *
47510 GTGCTACT-TTCGTAAATTTTTTAAAAAA
1 GTGATA-TATTTGTAAATTTTTT-AAAAA
* * **
47538 ATGATAAATTCAT-AATTTTTTAAAAA
1 GTGATATATTTGTAAATTTTTTAAAAA
* * *
47564 GTGATGT-TTTAGTAATTATTTTTAAAATG
1 GTGATATATTT-GTAAAT-TTTTTAAAA-A
47593 GTGATATATTTGTAAATTTTTTAAAAA
1 GTGATATATTTGTAAATTTTTTAAAAA
47620 AGGGTGATAA
Statistics
Matches: 85, Mismatches: 17, Indels: 17
0.71 0.14 0.14
Matches are distributed among these distances:
25 2 0.02
26 10 0.12
27 10 0.12
28 42 0.49
29 18 0.21
30 3 0.04
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.46
Consensus pattern (27 bp):
GTGATATATTTGTAAATTTTTTAAAAA
Found at i:47669 original size:10 final size:10
Alignment explanation
Indices: 47654--47680 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
47644 TGATCATATC
47654 TTGACCACCT
1 TTGACCACCT
47664 TTGACCACCT
1 TTGACCACCT
47674 TTGACCA
1 TTGACCA
47681 AAACTTTGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.37, G:0.11, T:0.30
Consensus pattern (10 bp):
TTGACCACCT
Found at i:50104 original size:62 final size:62
Alignment explanation
Indices: 50018--50178 Score: 261
Period size: 62 Copynumber: 2.6 Consensus size: 62
50008 ATTTCGCAAC
* *
50018 TCAATT-TCCAAATTCTCAACGCGAATATGTAAATCGCGTTGTGATTCGCCTATTTCGCGTT
1 TCAATTCTCCAAATTCTCAACGCGAATATGTAAATCGCGTTGCGATTCGCCTAATTCGCGTT
* *
50079 TCGATTCTCCAAATTCTTAACGCGAATATGTAAATCGCGTTGCGATTCGCCTAATTCGCGTT
1 TCAATTCTCCAAATTCTCAACGCGAATATGTAAATCGCGTTGCGATTCGCCTAATTCGCGTT
* *
50141 TCAATTCTCCAAATTCGCAACGCGAATCTGTAAATCGC
1 TCAATTCTCCAAATTCTCAACGCGAATATGTAAATCGC
50179 AACACGAATT
Statistics
Matches: 91, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
61 5 0.05
62 86 0.95
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (62 bp):
TCAATTCTCCAAATTCTCAACGCGAATATGTAAATCGCGTTGCGATTCGCCTAATTCGCGTT
Found at i:50137 original size:21 final size:21
Alignment explanation
Indices: 50113--50158 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
50103 AATATGTAAA
* *
50113 TCGCGTTGCGATTCGCCTAAT
1 TCGCGTTGCAATTCGCCAAAT
* *
50134 TCGCGTTTCAATTCTCCAAAT
1 TCGCGTTGCAATTCGCCAAAT
50155 TCGC
1 TCGC
50159 AACGCGAATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.17, C:0.30, G:0.17, T:0.35
Consensus pattern (21 bp):
TCGCGTTGCAATTCGCCAAAT
Found at i:50180 original size:20 final size:20
Alignment explanation
Indices: 50155--50203 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
50145 TTCTCCAAAT
*
50155 TCGCAACGCGAATCTGTAAA
1 TCGCAACACGAATCTGTAAA
* *
50175 TCGCAACACGAATTTGTAAT
1 TCGCAACACGAATCTGTAAA
50195 TCGCAACAC
1 TCGCAACAC
50204 AAAAGTCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.35, C:0.27, G:0.16, T:0.22
Consensus pattern (20 bp):
TCGCAACACGAATCTGTAAA
Found at i:50405 original size:22 final size:22
Alignment explanation
Indices: 50375--50425 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
50365 CTACAGCGAC
*
50375 ATCCGTCCCCATCTCCGACGAA
1 ATCCATCCCCATCTCCGACGAA
* *
50397 ATTCATCCCCATCTCCGGCGAA
1 ATCCATCCCCATCTCCGACGAA
50419 ATCCATC
1 ATCCATC
50426 TAACTCCATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.24, C:0.43, G:0.12, T:0.22
Consensus pattern (22 bp):
ATCCATCCCCATCTCCGACGAA
Found at i:50857 original size:20 final size:20
Alignment explanation
Indices: 50796--50862 Score: 93
Period size: 19 Copynumber: 3.5 Consensus size: 20
50786 AAAATCGCAA
*
50796 TGCGATTTT-AGTTTCGCGT
1 TGCGATTTTCATTTTCGCGT
* *
50815 TGCAATTTTCATTTT-GTGT
1 TGCGATTTTCATTTTCGCGT
50834 TGCGATTTTCATTTTCGCGT
1 TGCGATTTTCATTTTCGCGT
50854 TGCGATTTT
1 TGCGATTTT
50863 AAGTTTCAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
19 25 0.61
20 16 0.39
ACGTcount: A:0.12, C:0.15, G:0.21, T:0.52
Consensus pattern (20 bp):
TGCGATTTTCATTTTCGCGT
Found at i:52395 original size:42 final size:42
Alignment explanation
Indices: 52325--52432 Score: 144
Period size: 42 Copynumber: 2.6 Consensus size: 42
52315 TGATGAGAAC
** *
52325 CCTCCACTTCGAGAGCCATCACCTGATCGAGCCGATTCTACA
1 CCTCCACAACGAGAGCCATCACCTGATCGAGCCGATTATACA
* * * *
52367 GCTCGACACCTAGAGCCATCACCTGATCGAGCCGATTATACA
1 CCTCCACAACGAGAGCCATCACCTGATCGAGCCGATTATACA
*
52409 CCTCCACAACGAGAGACATCACCT
1 CCTCCACAACGAGAGCCATCACCT
52433 ATTCTATCAC
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.28, C:0.37, G:0.17, T:0.19
Consensus pattern (42 bp):
CCTCCACAACGAGAGCCATCACCTGATCGAGCCGATTATACA
Found at i:52575 original size:21 final size:21
Alignment explanation
Indices: 52551--52596 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
52541 GGGGAGTTAA
* * *
52551 GTGATGAGGTCAGTGCTTTGC
1 GTGAGGAGGTCAGTACTTTAC
*
52572 GTGAGGAGGTCGGTACTTTAC
1 GTGAGGAGGTCAGTACTTTAC
52593 GTGA
1 GTGA
52597 CAACAATGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.17, C:0.13, G:0.39, T:0.30
Consensus pattern (21 bp):
GTGAGGAGGTCAGTACTTTAC
Found at i:53055 original size:21 final size:21
Alignment explanation
Indices: 53004--53099 Score: 108
Period size: 21 Copynumber: 4.7 Consensus size: 21
52994 AATTCACCTG
53004 TCATCGTTCAAGAGGCC-C-C
1 TCATCGTTCAAGAGGCCACTC
* *
53023 AT-ACCTTTCAAGAGGCCACTC
1 -TCATCGTTCAAGAGGCCACTC
*
53044 TCATCGTTCAAGAGGTCACTC
1 TCATCGTTCAAGAGGCCACTC
*
53065 TCATCGTTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCACTC
* *
53086 CCACCGTTCAAGAG
1 TCATCGTTCAAGAG
53100 CTCGATTCAC
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
19 13 0.20
20 3 0.05
21 48 0.75
ACGTcount: A:0.24, C:0.34, G:0.19, T:0.23
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCACTC
Found at i:54625 original size:20 final size:20
Alignment explanation
Indices: 54600--54672 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
54590 TGCGATGGTT
54600 GCGAAAGTAAAATTCGCAAC
1 GCGAAAGTAAAATTCGCAAC
* * **
54620 GCGAAAGTTAAATGCGCATT
1 GCGAAAGTAAAATTCGCAAC
*
54640 GCGAAAGTAAAATTCGTAAC
1 GCGAAAGTAAAATTCGCAAC
*
54660 GCGAAAGTCAAAT
1 GCGAAAGTAAAAT
54673 GTGCGTTGCA
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.19
Consensus pattern (20 bp):
GCGAAAGTAAAATTCGCAAC
Found at i:54653 original size:40 final size:40
Alignment explanation
Indices: 54598--54673 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
54588 GTTGCGATGG
*
54598 TTGCGAAAGTAAAATTCGCAACGCGAAAGTTAAATGCGCA
1 TTGCGAAAGTAAAATTCGCAACGCGAAAGTCAAATGCGCA
*
54638 TTGCGAAAGTAAAATTCGTAACGCGAAAGTCAAATG
1 TTGCGAAAGTAAAATTCGCAACGCGAAAGTCAAATG
54674 TGCGTTGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.21
Consensus pattern (40 bp):
TTGCGAAAGTAAAATTCGCAACGCGAAAGTCAAATGCGCA
Found at i:54728 original size:20 final size:20
Alignment explanation
Indices: 54683--54728 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
54673 GTGCGTTGCA
*
54683 ATTTTCGCGTTGTGAATTTT
1 ATTTTCGCGTTGTGAATTTG
* *
54703 ACTTTCGCGTTTTGAATTTG
1 ATTTTCGCGTTGTGAATTTG
54723 ATTTTC
1 ATTTTC
54729 ACAGTAATCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.15, C:0.13, G:0.17, T:0.54
Consensus pattern (20 bp):
ATTTTCGCGTTGTGAATTTG
Found at i:55055 original size:18 final size:18
Alignment explanation
Indices: 55034--55069 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
55024 AGCCGGTTGT
*
55034 GATTGTGATTTTGATTTC
1 GATTGCGATTTTGATTTC
55052 GATTGCGATTTTGATTTC
1 GATTGCGATTTTGATTTC
55070 CTTTTGCTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.08, G:0.22, T:0.53
Consensus pattern (18 bp):
GATTGCGATTTTGATTTC
Found at i:58134 original size:14 final size:15
Alignment explanation
Indices: 58098--58135 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
58088 GAAATCATTG
58098 AAAAATTATATAGAA
1 AAAAATTATATAGAA
*
58113 ATAAAATTATGTA-AA
1 A-AAAATTATATAGAA
58128 AAAAATTA
1 AAAAATTA
58136 GAGATGGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (15 bp):
AAAAATTATATAGAA
Found at i:58308 original size:20 final size:21
Alignment explanation
Indices: 58283--58393 Score: 86
Period size: 20 Copynumber: 5.4 Consensus size: 21
58273 AAATAAAACC
58283 TGTTGCGAAATT-AAAATTCG
1 TGTTGCGAAATTCAAAATTCG
*
58303 TGTTGC-AAATTCAAAAATCG
1 TGTTGCGAAATTCAAAATTCG
* ** *
58323 AGTTGCGATTTTCCAAATTCG
1 TGTTGCGAAATTCAAAATTCG
* **
58344 CGTTGCG-AATTCAAAAACCG
1 TGTTGCGAAATTCAAAATTCG
* **
58364 AGTTGC-AAATTTGAAATTCAG
1 TGTTGCGAAATTCAAAATTC-G
58385 TGTTGCGAA
1 TGTTGCGAA
58394 TTTGGAAATC
Statistics
Matches: 68, Mismatches: 18, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
19 5 0.07
20 39 0.57
21 22 0.32
22 2 0.03
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (21 bp):
TGTTGCGAAATTCAAAATTCG
Found at i:58343 original size:41 final size:40
Alignment explanation
Indices: 58296--58395 Score: 128
Period size: 41 Copynumber: 2.5 Consensus size: 40
58286 TGCGAAATTA
* * * *
58296 AAATTCGTGTTGCAAATTCAAAAATCGAGTTGCGATTTTCC
1 AAATTCGTGTTGCGAATTCAAAAACCGAGTTGCAAATTT-C
* *
58337 AAATTCGCGTTGCGAATTCAAAAACCGAGTTGCAAATTTG
1 AAATTCGTGTTGCGAATTCAAAAACCGAGTTGCAAATTTC
58377 AAATTCAGTGTTGCGAATT
1 AAATTC-GTGTTGCGAATT
58396 TGGAAATCGT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 6 0.12
41 45 0.88
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (40 bp):
AAATTCGTGTTGCGAATTCAAAAACCGAGTTGCAAATTTC
Found at i:58389 original size:21 final size:19
Alignment explanation
Indices: 58365--58418 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
58355 CAAAAACCGA
*
58365 GTTGCAAATTTGAAATTCAGT
1 GTTGCGAATTTGAAA-TC-GT
58386 GTTGCGAATTTGGAAATCGT
1 GTTGCGAATTT-GAAATCGT
*
58406 ATTGCGAATTTGA
1 GTTGCGAATTTGA
58419 CTTATGTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 2 0.07
20 12 0.40
21 12 0.40
22 4 0.13
ACGTcount: A:0.30, C:0.09, G:0.24, T:0.37
Consensus pattern (19 bp):
GTTGCGAATTTGAAATCGT
Found at i:58450 original size:20 final size:20
Alignment explanation
Indices: 58426--58515 Score: 103
Period size: 20 Copynumber: 4.5 Consensus size: 20
58416 TGACTTATGT
*
58426 GTTGCGAATTACAGATTTGC
1 GTTGCGAATTACAGATTCGC
* * *
58446 TTTGCGATTTACAGATTCAC
1 GTTGCGAATTACAGATTCGC
*
58466 GTTGCGATTTACAGATTCGC
1 GTTGCGAATTACAGATTCGC
58486 GTTGCGAATATGA-A-ATTCGC
1 GTTGCGAAT-T-ACAGATTCGC
58506 GTTGCGAATT
1 GTTGCGAATT
58516 TGGAAAATCG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
19 1 0.02
20 57 0.93
21 2 0.03
22 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
GTTGCGAATTACAGATTCGC
Found at i:58526 original size:21 final size:20
Alignment explanation
Indices: 58482--58526 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
58472 ATTTACAGAT
*
58482 TCGCGTTGCGAATATGAAAT
1 TCGCGTTGCGAATATGAAAA
*
58502 TCGCGTTGCGAATTTGGAAAA
1 TCGCGTTGCGAATAT-GAAAA
58523 TCGC
1 TCGC
58527 AACGCAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (20 bp):
TCGCGTTGCGAATATGAAAA
Found at i:59407 original size:23 final size:23
Alignment explanation
Indices: 59353--59407 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
59343 AAAGATAAGA
* *
59353 TAAAGAAAGTAAAGATAAAATAG
1 TAAAGAAAATAAAGATAAAAAAG
*
59376 T-AAGTAAAATAAATATAAAAAAG
1 TAAAG-AAAATAAAGATAAAAAAG
59399 TAAAGAAAA
1 TAAAGAAAA
59408 AGAAGAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 3 0.11
23 21 0.78
24 3 0.11
ACGTcount: A:0.69, C:0.00, G:0.13, T:0.18
Consensus pattern (23 bp):
TAAAGAAAATAAAGATAAAAAAG
Found at i:59467 original size:29 final size:28
Alignment explanation
Indices: 59434--59503 Score: 74
Period size: 28 Copynumber: 2.5 Consensus size: 28
59424 AAATAAAACC
*
59434 AATAAATA-AAATAATAATAAAAAAGTAAA
1 AATAAATATAAATAAAAAT-AAAAA-TAAA
*
59463 AAT-AATATATATAAAAATAAAAATAAA
1 AATAAATATAAATAAAAATAAAAATAAA
59490 AA-AAATAGTAAATA
1 AATAAATA-TAAATA
59504 TATATATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
27 10 0.29
28 14 0.40
29 11 0.31
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (28 bp):
AATAAATATAAATAAAAATAAAAATAAA
Found at i:59477 original size:38 final size:40
Alignment explanation
Indices: 59435--59589 Score: 122
Period size: 40 Copynumber: 3.9 Consensus size: 40
59425 AATAAAACCA
*
59435 ATAAATAAAATAATAATAAAAA-AGTAAAAATA-ATATAT
1 ATAAATAAAATAATAAAAAAAATAGTAAAAATATATATAT
* *
59473 ATAAA-AATAAAAATAAAAAAAATAGTAAATATATATATAT
1 ATAAATAA-AATAATAAAAAAAATAGTAAAAATATATATAT
* * *** * *
59513 ATATATAAATTAATAAAACTGATAATAAAAAAATAATATAT
1 ATAAATAAAATAATAAAAAAAATAGTAAAAATAT-ATATAT
* * **
59554 ATATATATATATAATCTAAAAAA-A-TAAAAATATATA
1 ATAAATA-AAATAATAAAAAAAATAGTAAAAATATATA
59590 CTAAAGTAAA
Statistics
Matches: 91, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
37 2 0.02
38 17 0.19
39 12 0.13
40 36 0.40
41 16 0.18
42 8 0.09
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.30
Consensus pattern (40 bp):
ATAAATAAAATAATAAAAAAAATAGTAAAAATATATATAT
Found at i:59505 original size:32 final size:34
Alignment explanation
Indices: 59441--59509 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 34
59431 ACCAATAAAT
*
59441 AAAATAATAATAAAAAAGTAAAAATAATATATATA
1 AAAATAAAAATAAAAAAG-AAAAATAATATATATA
* *
59476 AAAATAAAAATAAAAAA-AATAGTAAATATATATA
1 AAAATAAAAATAAAAAAGAAAAAT-AATATATATA
59510 TATATATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
33 4 0.13
34 10 0.33
35 16 0.53
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (34 bp):
AAAATAAAAATAAAAAAGAAAAATAATATATATA
Found at i:59507 original size:36 final size:35
Alignment explanation
Indices: 59441--59589 Score: 93
Period size: 38 Copynumber: 3.9 Consensus size: 35
59431 ACCAATAAAT
* *
59441 AAAATAATAATAAAAAAGTAAAAATAATATATATA
1 AAAATAAAAATAAAAAAATAAAAATAATATATATA
*
59476 AAAATAAAAATAAAAAAAATAGTAAATATATATATATA
1 AAAATAAAAAT-AAAAAAATA-AAAATA-ATATATATA
* *
59514 TATATAAATTAATAAAACTGATAATAAAAAAATAATATATATA
1 AAAATAAA--AATAAAA---A-AAT--AAAAATAATATATATA
* **
59557 TATATATATAATCTAAAAAAATAAAAAT-ATATA
1 -A-AAATA-AAAATAAAAAAATAAAAATAATATA
59590 CTAAAGTAAA
Statistics
Matches: 91, Mismatches: 9, Indels: 26
0.72 0.07 0.21
Matches are distributed among these distances:
35 10 0.11
36 8 0.09
37 10 0.11
38 21 0.23
39 4 0.04
40 6 0.07
41 1 0.01
42 1 0.01
43 12 0.13
44 10 0.11
45 6 0.07
46 2 0.02
ACGTcount: A:0.67, C:0.01, G:0.02, T:0.30
Consensus pattern (35 bp):
AAAATAAAAATAAAAAAATAAAAATAATATATATA
Found at i:59586 original size:25 final size:26
Alignment explanation
Indices: 59558--59608 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
59548 ATATATATAT
* *
59558 ATATATA-TAATCTAAAAAAATAAAA
1 ATATATACTAAACTAAAAAAAGAAAA
*
59583 ATATATACTAAAGTAAAAAAAGAAAA
1 ATATATACTAAACTAAAAAAAGAAAA
59609 TGCATAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (26 bp):
ATATATACTAAACTAAAAAAAGAAAA
Found at i:60778 original size:39 final size:37
Alignment explanation
Indices: 60724--60799 Score: 125
Period size: 39 Copynumber: 2.0 Consensus size: 37
60714 CGAGGGTTTG
*
60724 GTGTTTCAAGAGAAACATTTTCAAAGGTTTTTTGTGTGT
1 GTGTTTCAAGAGAAACAATTTC-AAGGTTTTTT-TGTGT
60763 GTGTTTCAAGAGAAACAATTTCAAGGTTTTTTTGTGT
1 GTGTTTCAAGAGAAACAATTTCAAGGTTTTTTTGTGT
60800 TTAAAGAGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 5 0.14
38 10 0.28
39 21 0.58
ACGTcount: A:0.26, C:0.08, G:0.22, T:0.43
Consensus pattern (37 bp):
GTGTTTCAAGAGAAACAATTTCAAGGTTTTTTTGTGT
Found at i:60846 original size:36 final size:36
Alignment explanation
Indices: 60797--61030 Score: 177
Period size: 36 Copynumber: 6.6 Consensus size: 36
60787 GGTTTTTTTG
* *
60797 TGTTT-AAAGAGAAACTGTCTCAATAGGGACAAAATT
1 TGTTTCAAA-AGAAACTGTCTCAAGAGAGACAAAATT
*
60833 TGTTTCAAAAGAAATTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAAAGAAACTGTCTCAAGAGAGACAAAA-TT
* * *
60870 AG-TTCTAAAAGAAACTGTCTCAAGGGAGACGAAATT
1 TGTTTC-AAAAGAAACTGTCTCAAGAGAGACAAAATT
* *
60906 TGTTTCAAGGAA-AAGA-TAT-TC-A-A-AG----ATTT
1 TGTTTCAA--AAGAA-ACTGTCTCAAGAGAGACAAAATT
**
60935 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
1 TGTTTCAAAAGAAACTGTCTCAAGAGAGACAAAATT
** * *
60971 TGTTTCAAGGGAAACTGTCTCAAGAGTGACAAGATTT
1 TGTTTCAAAAGAAACTGTCTCAAGAGAGACAA-AATT
**
61008 TGTTTCAAGGGAAACTGTCTCAA
1 TGTTTCAAAAGAAACTGTCTCAA
61031 AACTCGTTTT
Statistics
Matches: 163, Mismatches: 17, Indels: 35
0.76 0.08 0.16
Matches are distributed among these distances:
27 1 0.01
28 4 0.02
29 13 0.08
30 1 0.01
31 1 0.01
32 2 0.01
33 2 0.01
35 1 0.01
36 71 0.44
37 64 0.39
38 3 0.02
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.28
Consensus pattern (36 bp):
TGTTTCAAAAGAAACTGTCTCAAGAGAGACAAAATT
Found at i:60889 original size:37 final size:35
Alignment explanation
Indices: 60798--60910 Score: 127
Period size: 37 Copynumber: 3.1 Consensus size: 35
60788 GTTTTTTTGT
* * *
60798 GTTTAAAGAGAAACTGTCTCAATAGGGACAAAATTT
1 GTTTAAA-AGAAACTGTCTCAAGAGAGACAAAATTA
*
60834 GTTTCAAAAGAAATTGTCTCAAGAGAGACAAAACTTA
1 GTTT-AAAAGAAACTGTCTCAAGAGAGACAAAA-TTA
* * *
60871 GTTCTAAAAGAAACTGTCTCAAGGGAGACGAAATTT
1 GTT-TAAAAGAAACTGTCTCAAGAGAGACAAAATTA
60907 GTTT
1 GTTT
60911 CAAGGAAAAG
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
35 1 0.02
36 31 0.47
37 33 0.50
38 1 0.02
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.27
Consensus pattern (35 bp):
GTTTAAAAGAAACTGTCTCAAGAGAGACAAAATTA
Found at i:61019 original size:37 final size:37
Alignment explanation
Indices: 60928--61030 Score: 181
Period size: 36 Copynumber: 2.8 Consensus size: 37
60918 AAGATATTCA
60928 AAGATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
1 AAGATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
* *
60965 AA-AATTTGTTTCAAGGGAAACTGTCTCAAGAGTGAC
1 AAGATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
61001 AAGATTTTGTTTCAAGGGAAACTGTCTCAA
1 AAGATTTTGTTTCAAGGGAAACTGTCTCAA
61031 AACTCGTTTT
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 34 0.55
37 28 0.45
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (37 bp):
AAGATTTTGTTTCAAGGGAAACTGTCTCAAGAGAGAC
Found at i:61031 original size:102 final size:102
Alignment explanation
Indices: 60831--61017 Score: 254
Period size: 102 Copynumber: 1.8 Consensus size: 102
60821 AGGGACAAAA
* *
60831 TTTGTTTCAAAAGAAATTGTCTCAAGAGAGACAAAACTTAGTTCTAAAAGAAACTGTCTCAAGGG
1 TTTGTTTCAAAAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCTAAAAGAAACTGTCTCAAGAG
60896 AGACGAAATTTGTTTCAAGGAAAAGATATTCAAAGAT
66 AGACGAAATTTGTTTCAAGGAAAAGATATTCAAAGAT
** * **
60933 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA-TTTGTT-TCAAGGGAAACTGTCTCAAGA
1 TTTGTTTCAAAAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCT-AAAAGAAACTGTCTCAAGA
*
60996 GTGAC-AAGATTTTGTTTCAAGG
65 GAGACGAA-A-TTTGTTTCAAGG
61018 GAAACTGTCT
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
100 3 0.04
101 26 0.35
102 45 0.61
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (102 bp):
TTTGTTTCAAAAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCTAAAAGAAACTGTCTCAAGAG
AGACGAAATTTGTTTCAAGGAAAAGATATTCAAAGAT
Found at i:61147 original size:37 final size:37
Alignment explanation
Indices: 61096--61284 Score: 141
Period size: 37 Copynumber: 5.4 Consensus size: 37
61086 TCAAGGTTTA
*
61096 TGTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTT
1 TGTTTCAAGGGAAACTATCTCAAGGGAGACAAAATTT
*
61133 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTATCTCAAGGGAGACAAAATTT
** * * * *
61169 AATTTCAAAGGAAA-TGTTTTCAA---TG------TTT
1 TGTTTCAAGGGAAACT-ATCTCAAGGGAGACAAAATTT
* *
61197 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGGGAAACTATCTCAAGGGAGACAAAATTT
* * * *
61235 TGTTTCAAGGGAAACTACCCCAAGCGAGATAAAA-TT
1 TGTTTCAAGGGAAACTATCTCAAGGGAGACAAAATTT
*
61271 TATTTCAAGGGAAA
1 TGTTTCAAGGGAAA
61285 TGTTTTCAAT
Statistics
Matches: 117, Mismatches: 22, Indels: 27
0.70 0.13 0.16
Matches are distributed among these distances:
28 2 0.02
29 15 0.13
30 1 0.01
32 1 0.01
33 1 0.01
35 1 0.01
36 33 0.28
37 60 0.51
38 3 0.03
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (37 bp):
TGTTTCAAGGGAAACTATCTCAAGGGAGACAAAATTT
Found at i:61191 original size:102 final size:102
Alignment explanation
Indices: 61083--61490 Score: 512
Period size: 102 Copynumber: 3.9 Consensus size: 102
61073 GAGGGAAACA
* *
61083 TTTTCAAGGTTTATGTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAAC
1 TTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAAC
*
61148 TATCTCAAGAGAGACAAAATTAATTTCAAAGGAAATG
66 TATCTCAAGCGAGACAAAATTAATTTCAAAGGAAATG
61185 TTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAAC
1 TTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAAC
* * * * *
61250 TACCCCAAGCGAGATAAAATTTATTTCAAGGGAAATG
66 TATCTCAAGCGAGACAAAATTAATTTCAAAGGAAATG
* * *
61287 TTTTCAATGTTTATGTTTCAAGGGAAACAAAATTTCGTTTCAAGGGAGACAAAATTTCGTTTCAA
1 TTTTCAATGTTTATGTTTCAAGAGAAAC------T-GTCTCAAGGGAGACAAAATTTTGTTTCAA
* * *
61352 GGGAAACTATCTCAATCGAGATAAAATTCATTTC-AAGAGAAATG
59 GGGAAACTATCTCAAGCGAGACAAAATTAATTTCAAAG-GAAATG
* * * **
61396 TTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAATTTAGTTCCAAAAGAAA
1 TTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGAC-AAAATTTTGTTTCAAGGGAAA
* * * * *
61461 ATGTCTCAAGGGAGACGAAATTAGTTTCAA
65 CTATCTCAAGCGAGACAAAATTAATTTCAA
61491 TGAAAACAAA
Statistics
Matches: 265, Mismatches: 31, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
102 133 0.50
103 38 0.14
104 1 0.00
108 3 0.01
109 90 0.34
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.30
Consensus pattern (102 bp):
TTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAAC
TATCTCAAGCGAGACAAAATTAATTTCAAAGGAAATG
Found at i:61329 original size:22 final size:22
Alignment explanation
Indices: 61301--61358 Score: 107
Period size: 22 Copynumber: 2.6 Consensus size: 22
61291 CAATGTTTAT
61301 GTTTCAAGGGAAACAAAATTTC
1 GTTTCAAGGGAAACAAAATTTC
*
61323 GTTTCAAGGGAGACAAAATTTC
1 GTTTCAAGGGAAACAAAATTTC
61345 GTTTCAAGGGAAAC
1 GTTTCAAGGGAAAC
61359 TATCTCAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.26
Consensus pattern (22 bp):
GTTTCAAGGGAAACAAAATTTC
Found at i:61374 original size:109 final size:102
Alignment explanation
Indices: 61069--61442 Score: 523
Period size: 102 Copynumber: 3.6 Consensus size: 102
61059 TATTTTTGTG
* ** * *
61069 TTTCGAGGGAAACATTTTCAAGGTTTATGTTTCAAGAGAAACTATCTCAAGGGAGACAAAATTTT
1 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
* *
61134 GTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTAA
66 GTTTCAAGGGAAACTATCTCAAGCGAGATAAAATTAA
*
61171 TTTCAAAGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
1 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
* * *
61236 GTTTCAAGGGAAACTACCCCAAGCGAGATAAAATTTA
66 GTTTCAAGGGAAACTATCTCAAGCGAGATAAAATTAA
* *
61273 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGGGAAACAAAATTTCGTTTCAAGGGAGACA
1 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAAC------T-GTCTCAAGGGAGACA
* * *
61338 AAATTTCGTTTCAAGGGAAACTATCTCAATCGAGATAAAATTCA
59 AAATTTTGTTTCAAGGGAAACTATCTCAAGCGAGATAAAATTAA
* *
61382 TTTCAAGAGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA
61443 ATTTAGTTCC
Statistics
Matches: 242, Mismatches: 23, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
102 147 0.61
103 1 0.00
108 1 0.00
109 93 0.38
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (102 bp):
TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
GTTTCAAGGGAAACTATCTCAAGCGAGATAAAATTAA
Found at i:61996 original size:106 final size:106
Alignment explanation
Indices: 61723--61997 Score: 397
Period size: 106 Copynumber: 2.6 Consensus size: 106
61713 CTAGAACTAA
** * * * * * *
61723 GAAATTGTTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTCGACTCC
1 GAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTATCTCGAGTCC
*
61788 AATATCCTTCGATGTGAAGTTGAAATTGGCTCCGAAATTGG
66 AATATCCTTCGATGTGAAGTTGAAATTGGCTACGAAATTGG
*
61829 GAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTTTGTTATCTCGAGTCC
1 GAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTATCTCGAGTCC
* * *
61894 AATATCCTTTGTTGTGAAGTTGAAATTGGCTATGAAATTGG
66 AATATCCTTCGATGTGAAGTTGAAATTGGCTACGAAATTGG
* * * *
61935 GAAATTATTTGTTGACAACCAGCCGTCCCTTCATTGTGGAGTTGAACTTGTGTTTTCTCGAGT
1 GAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTATCTCGAGT
61998 GGCACGATAT
Statistics
Matches: 151, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
106 151 1.00
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.36
Consensus pattern (106 bp):
GAAATTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTATCTCGAGTCC
AATATCCTTCGATGTGAAGTTGAAATTGGCTACGAAATTGG
Found at i:62629 original size:32 final size:32
Alignment explanation
Indices: 62575--62687 Score: 138
Period size: 32 Copynumber: 3.5 Consensus size: 32
62565 TTTGCATCAG
* * * * *
62575 GATGTTGAAT-TCCCAAAGATGCCTCAATATTC
1 GATGTTGAATCT-CAAAAAATGCCCCAACATTT
62607 GATGTTGAATCTCAAAAAATGCCCCAACATTT
1 GATGTTGAATCTCAAAAAATGCCCCAACATTT
* *
62639 GATGTTAAATCTAAAAAAATGCCCCAACATTT
1 GATGTTGAATCTCAAAAAATGCCCCAACATTT
62671 GATGTTGAATCTTCAAA
1 GATGTTGAATC-TCAAA
62688 GATGCCCTCA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
32 65 0.93
33 5 0.07
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.30
Consensus pattern (32 bp):
GATGTTGAATCTCAAAAAATGCCCCAACATTT
Found at i:63732 original size:69 final size:70
Alignment explanation
Indices: 63620--63758 Score: 210
Period size: 69 Copynumber: 2.0 Consensus size: 70
63610 TGTCTCTCTC
* * *
63620 TTGATGCTCCATGATCTTTCGAGTGGAGTGATTCAGTAATTCAGAAATGATTGTGCTTGATCGAT
1 TTGATGCTCCATGATCTTTCGAGTGAAGTGATTCAGTAATTCAGAAATGATTATGCTTGATCAAT
63685 CTCAT
66 CTCAT
* *
63690 TTGATGCTCTC-TGATCTTT-GAGTGAAGTGGTTCAGTGATTCAGAAATGATTATGCTTGATCAA
1 TTGATGCTC-CATGATCTTTCGAGTGAAGTGATTCAGTAATTCAGAAATGATTATGCTTGATCAA
63753 TCTCAT
65 TCTCAT
63759 AGTTTGAATC
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
69 45 0.71
70 17 0.27
71 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.38
Consensus pattern (70 bp):
TTGATGCTCCATGATCTTTCGAGTGAAGTGATTCAGTAATTCAGAAATGATTATGCTTGATCAAT
CTCAT
Found at i:67020 original size:20 final size:21
Alignment explanation
Indices: 66988--67044 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
66978 ATAAAATAGT
*
66988 AAGTAAAATAAATATAA-AAA
1 AAGTAAAAAAAATATAAGAAA
*
67008 AATTAAAAAAAATA-AAGAAA
1 AAGTAAAAAAAATATAAGAAA
*
67028 AAGAAGAAAAAAATATA
1 AAGTA-AAAAAAATATA
67045 TATAAATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
19 2 0.07
20 18 0.60
21 9 0.30
22 1 0.03
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.16
Consensus pattern (21 bp):
AAGTAAAAAAAATATAAGAAA
Found at i:67068 original size:53 final size:53
Alignment explanation
Indices: 66963--67123 Score: 134
Period size: 53 Copynumber: 2.9 Consensus size: 53
66953 AAAAGATAAG
* *
66963 ATAAAGAAAGTAAAGATAAAATAGTA-AGTAAAATAAATATAAAAAAATTAAAAAAAATA
1 ATAAA-AAAGTAAAAATAAAATA-TATA-T-AAATAAA-A-AAATAAA-TAAAAAAAATA
*
67022 A-AGAAAAAG-AAGAAA-AAAATATATATAAATAAAACAAATAAAT-AAAATAATA
1 ATA-AAAAAGTAA-AAATAAAATATATATAAATAAAA-AAATAAATAAAAAAAATA
* * *
67074 ATAAAAAAGTAAAAATAATATATATATATATATATAAAATAAATAAAAAA
1 ATAAAAAAGTAAAAATAAAATATATATAAATA-AAAAAATAAATAAAAAA
67124 TAGTAAATAT
Statistics
Matches: 86, Mismatches: 8, Indels: 21
0.75 0.07 0.18
Matches are distributed among these distances:
52 18 0.21
53 26 0.30
54 13 0.15
55 7 0.08
56 3 0.03
57 9 0.10
58 7 0.08
59 3 0.03
ACGTcount: A:0.72, C:0.01, G:0.06, T:0.22
Consensus pattern (53 bp):
ATAAAAAAGTAAAAATAAAATATATATAAATAAAAAAATAAATAAAAAAAATA
Found at i:67069 original size:9 final size:9
Alignment explanation
Indices: 66993--67121 Score: 54
Period size: 9 Copynumber: 13.9 Consensus size: 9
66983 ATAGTAAGTA
66993 AAATAAATAT
1 AAATAAA-AT
67003 AAA-AAAATT
1 AAATAAAA-T
*
67012 AAAAAAAAT
1 AAATAAAAT
*
67021 AAAGAAAA-
1 AAATAAAAT
*
67029 AGAAGAAAA-
1 A-AATAAAAT
*
67038 AAATATATAT
1 AAATA-AAAT
*
67048 AAATAAAAC
1 AAATAAAAT
67057 AAAT-AAAT
1 AAATAAAAT
67065 AAAATAATAAT
1 -AAATAA-AAT
*
67076 AAA-AAAGT
1 AAATAAAAT
67084 AAA-AATAAT
1 AAATAA-AAT
*
67093 ATATATATATAT
1 A-A-ATA-AAAT
*
67105 ATATAAAAT
1 AAATAAAAT
67114 AAATAAAA
1 AAATAAAA
67122 AATAGTAAAT
Statistics
Matches: 94, Mismatches: 12, Indels: 27
0.71 0.09 0.20
Matches are distributed among these distances:
8 15 0.16
9 50 0.53
10 20 0.21
11 4 0.04
12 4 0.04
13 1 0.01
ACGTcount: A:0.74, C:0.01, G:0.03, T:0.22
Consensus pattern (9 bp):
AAATAAAAT
Found at i:67071 original size:49 final size:51
Alignment explanation
Indices: 66995--67130 Score: 140
Period size: 49 Copynumber: 2.6 Consensus size: 51
66985 AGTAAGTAAA
*
66995 ATAAATATAAAAAAATTAAAAAAAATAA-AGA-AAAAGAAG-AAAAA-AATATAT
1 ATAAATAT-AAAAAA-TAAATAAAATAATA-ATAAAA-AAGTAAAAATAATATAT
67046 ATAAATA-AAACAAATAAATAAAATAATAATAAAAAAGTAAAAATAATATAT
1 ATAAATATAAA-AAATAAATAAAATAATAATAAAAAAGTAAAAATAATATAT
* *
67097 ATATATATATATAAAATAAATAAAA-AATAGTAAA
1 ATA-A-ATATAAAAAATAAATAAAATAATAATAAA
67131 TATATATATA
Statistics
Matches: 74, Mismatches: 3, Indels: 15
0.80 0.03 0.16
Matches are distributed among these distances:
49 18 0.24
50 13 0.18
51 17 0.23
52 9 0.12
53 15 0.20
54 2 0.03
ACGTcount: A:0.73, C:0.01, G:0.04, T:0.23
Consensus pattern (51 bp):
ATAAATATAAAAAATAAATAAAATAATAATAAAAAAGTAAAAATAATATAT
Found at i:67096 original size:2 final size:2
Alignment explanation
Indices: 67091--67154 Score: 60
Period size: 2 Copynumber: 32.5 Consensus size: 2
67081 AGTAAAAATA
* * * * *
67091 AT AT AT AT AT AT AT AT AT A- AA AT AA AT A- AA AA AT AGT AA AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT
67132 AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
67155 AATTAATAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
1 2 0.04
2 49 0.92
3 2 0.04
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (2 bp):
AT
Found at i:75669 original size:17 final size:18
Alignment explanation
Indices: 75640--75678 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
75630 ATTCGTTCCA
75640 AAAATTAACAAAGAAAG-
1 AAAATTAACAAAGAAAGT
75657 AAAA-TAACAAAAGAAAGT
1 AAAATTAAC-AAAGAAAGT
75675 AAAA
1 AAAA
75679 ATAAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 4 0.20
17 12 0.60
18 4 0.20
ACGTcount: A:0.74, C:0.05, G:0.10, T:0.10
Consensus pattern (18 bp):
AAAATTAACAAAGAAAGT
Found at i:79948 original size:53 final size:52
Alignment explanation
Indices: 79882--80041 Score: 191
Period size: 53 Copynumber: 3.1 Consensus size: 52
79872 GTCAAGGTTG
* *
79882 GGTTAGAGAAGATGAACAGAGAGAGAAGATGAAGAGGCTCGGTTTGGGTTTGA
1 GGTTAGAGAAGATGAACAGAGAGAGAA-ATGAAGAGGCTAGGTTAGGGTTTGA
* *
79935 GGTTAGAGAAGATGAACAAAGA-AAAAATGAAGAGGCTAGGTTAGGGTTTG-
1 GGTTAGAGAAGATGAACAGAGAGAGAAATGAAGAGGCTAGGTTAGGGTTTGA
* * * * *
79985 GGATTAGAGAAGATAAATAGAGATAGAAAGTGAAGAGACTTGGTTAGGGTTT-A
1 GG-TTAGAGAAGATGAACAGAGAGAGAAA-TGAAGAGGCTAGGTTAGGGTTTGA
80038 GGTT
1 GGTT
80042 TGGCCCACGT
Statistics
Matches: 93, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
50 2 0.02
51 39 0.42
52 9 0.10
53 43 0.46
ACGTcount: A:0.38, C:0.04, G:0.36, T:0.23
Consensus pattern (52 bp):
GGTTAGAGAAGATGAACAGAGAGAGAAATGAAGAGGCTAGGTTAGGGTTTGA
Found at i:79984 original size:51 final size:51
Alignment explanation
Indices: 79882--80041 Score: 171
Period size: 51 Copynumber: 3.1 Consensus size: 51
79872 GTCAAGGTTG
* * * *
79882 GGTTAGAGAAGATGAACAGAGAGAGAAGATGAAGAGGCTCGGTTTGGGTTTGA
1 GGTTAGAGAAGATGAACA-A-AGAAAAAATGAAGAGGCTAGGTTAGGGTTTGA
79935 GGTTAGAGAAGATGAACAAAGAAAAAATGAAGAGGCTAGGTTAGGGTTTG-
1 GGTTAGAGAAGATGAACAAAGAAAAAATGAAGAGGCTAGGTTAGGGTTTGA
* * * * * *
79985 GGATTAGAGAAGATAAATAGAGATAGAAAGTGAAGAGACTTGGTTAGGGTTT-A
1 GG-TTAGAGAAGATGAACAAAGA-A-AAAATGAAGAGGCTAGGTTAGGGTTTGA
80038 GGTT
1 GGTT
80042 TGGCCCACGT
Statistics
Matches: 93, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
50 2 0.02
51 44 0.47
52 4 0.04
53 43 0.46
ACGTcount: A:0.38, C:0.04, G:0.36, T:0.23
Consensus pattern (51 bp):
GGTTAGAGAAGATGAACAAAGAAAAAATGAAGAGGCTAGGTTAGGGTTTGA
Found at i:80341 original size:26 final size:24
Alignment explanation
Indices: 80287--80343 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
80277 TTCAATTAAT
*
80287 ATATATATTTATATTAATAAATTA
1 ATATATATTTATATTAATAAATGA
*
80311 ATATATAGTTTATATATACT-AATGA
1 ATATATA-TTTATAT-TAATAAATGA
80336 ACTATATA
1 A-TATATA
80344 ATATATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 7 0.25
25 12 0.43
26 9 0.32
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (24 bp):
ATATATATTTATATTAATAAATGA
Found at i:80346 original size:33 final size:32
Alignment explanation
Indices: 80309--80437 Score: 183
Period size: 33 Copynumber: 4.1 Consensus size: 32
80299 ATTAATAAAT
80309 TAATATATAGTTTATATATACTAATGAACTATA
1 TAATATATAGTTT-TATATACTAATGAACTATA
*
80342 TAATATAT--TTTTATATACTAATGAACTTTA
1 TAATATATAGTTTTATATACTAATGAACTATA
* * *
80372 TAATATATAGTTTATATATACCAATAAATTATA
1 TAATATATAGTTT-TATATACTAATGAACTATA
80405 TAATATATAGTTTT-TATACTAATGAACTATA
1 TAATATATAGTTTTATATACTAATGAACTATA
80436 TA
1 TA
80438 GTTTATTAAT
Statistics
Matches: 85, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
30 26 0.31
31 19 0.22
32 4 0.05
33 36 0.42
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (32 bp):
TAATATATAGTTTTATATACTAATGAACTATA
Found at i:80376 original size:63 final size:63
Alignment explanation
Indices: 80283--80437 Score: 203
Period size: 63 Copynumber: 2.5 Consensus size: 63
80273 AATTTTCAAT
* * * *
80283 TAATATATATATTTATATTAAT-AA--AT-TAATATATAGTTTATATATACTAATGAACTATA
1 TAATATATATTTTTATACTAATGAACTATATAATATATAGTTTATATATACCAATAAACTATA
* *
80342 TAATATAT-TTTTATATACTAATGAACTTTATAATATATAGTTTATATATACCAATAAATTATA
1 TAATATATATTTT-TATACTAATGAACTATATAATATATAGTTTATATATACCAATAAACTATA
80405 TAATATATAGTTTTTATACTAATGAACTATATA
1 TAATATATA-TTTTTATACTAATGAACTATATA
80438 GTTTATTAAT
Statistics
Matches: 82, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
58 3 0.04
59 16 0.20
60 2 0.02
62 1 0.01
63 38 0.46
64 18 0.22
65 4 0.05
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (63 bp):
TAATATATATTTTTATACTAATGAACTATATAATATATAGTTTATATATACCAATAAACTATA
Found at i:80468 original size:94 final size:97
Alignment explanation
Indices: 80309--80483 Score: 223
Period size: 94 Copynumber: 1.8 Consensus size: 97
80299 ATTAATAAAT
** * *
80309 TAATATATAGTTTATATATACTAATGAACTATATAATATATTTTTATATACTAATGAACTTTATA
1 TAATATATAGTTTATATATACTAATGAACTATATAATATATTAATATATACTAATAAACTATATA
*
80374 A-TATATAGTTTATATATACCAATAAATTATA
66 AGTATATACTTTATATATACCAATAAATTATA
* * * *
80405 TAATATATAGTTT-T-TATACTAATGAACTATATAGTTTATTAATATA-ATTATATAAAGTATAT
1 TAATATATAGTTTATATATACTAATGAACTATATAATATATTAATATATACTA-ATAAACTATAT
80467 AATGTATATACTTTATA
65 AA-GTATATACTTTATA
80484 GTTTATTAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
93 3 0.04
94 38 0.57
95 1 0.01
96 25 0.37
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (97 bp):
TAATATATAGTTTATATATACTAATGAACTATATAATATATTAATATATACTAATAAACTATATA
AGTATATACTTTATATATACCAATAAATTATA
Found at i:80525 original size:2 final size:2
Alignment explanation
Indices: 80515--80544 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
80505 ATACAAAAAC
80515 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80545 TAATAAACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:80670 original size:30 final size:30
Alignment explanation
Indices: 80584--80683 Score: 80
Period size: 29 Copynumber: 3.3 Consensus size: 30
80574 ATAGTTTTTG
*
80584 TATTAATAAACTATGTAGTGTATATATAACTATA
1 TATTAATAAAC-ATATAGT-T-TATAT-ACTATA
*** * *
80618 TATTAATAAAC-TATAAACTATATAGTTTA
1 TATTAATAAACATATAGTTTATATACTATA
80647 TATTAATAAACATATAGTTTATATA-TAGTA
1 TATTAATAAACATATAGTTTATATACTA-TA
80677 TA-TAATA
1 TATTAATA
80684 TAGTTTATAT
Statistics
Matches: 54, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
29 21 0.39
30 19 0.35
32 3 0.06
34 11 0.20
ACGTcount: A:0.47, C:0.05, G:0.06, T:0.42
Consensus pattern (30 bp):
TATTAATAAACATATAGTTTATATACTATA
Found at i:80674 original size:11 final size:11
Alignment explanation
Indices: 80636--80707 Score: 74
Period size: 11 Copynumber: 6.5 Consensus size: 11
80626 AACTATAAAC
80636 TATATAGTTTA
1 TATATAGTTTA
* **
80647 TAT-TAATAAA
1 TATATAGTTTA
*
80657 CATATAGTTTA
1 TATATAGTTTA
*
80668 TATATAGTATA
1 TATATAGTTTA
80679 TAATATAGTTTA
1 T-ATATAGTTTA
*
80691 TATATAGTTCA
1 TATATAGTTTA
80702 TATATA
1 TATATA
80708 CACTACATAG
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
10 6 0.12
11 32 0.67
12 10 0.21
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (11 bp):
TATATAGTTTA
Found at i:80696 original size:23 final size:24
Alignment explanation
Indices: 80629--80698 Score: 94
Period size: 23 Copynumber: 3.0 Consensus size: 24
80619 ATTAATAAAC
80629 TATAAACTATATAGTTTATAT-TA-
1 TATAAAC-ATATAGTTTATATATAG
80652 -ATAAACATATAGTTTATATATAG
1 TATAAACATATAGTTTATATATAG
*
80675 TATATA-ATATAGTTTATATATAG
1 TATAAACATATAGTTTATATATAG
80698 T
1 T
80699 TCATATATAC
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
21 13 0.30
22 8 0.19
23 18 0.42
24 4 0.09
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.46
Consensus pattern (24 bp):
TATAAACATATAGTTTATATATAG
Found at i:80766 original size:2 final size:2
Alignment explanation
Indices: 80761--80805 Score: 51
Period size: 2 Copynumber: 23.5 Consensus size: 2
80751 CTATATAGTT
*
80761 TA TA TA TA T- TA TA T- TA -A TA TA TA CTT TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
80801 TA TA T
1 TA TA T
80806 TAATAAACCA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
1 3 0.08
2 33 0.89
3 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:80783 original size:17 final size:17
Alignment explanation
Indices: 80761--80810 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
80751 CTATATAGTT
80761 TATATATATTATATTAA
1 TATATATATTATATTAA
80778 TATATACT-TTATA-T-A
1 TATATA-TATTATATTAA
80793 TATATATA-TATATTAA
1 TATATATATTATATTAA
80809 TA
1 TA
80811 AACCATATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
14 5 0.17
15 8 0.28
16 4 0.14
17 11 0.38
18 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TATATATATTATATTAA
Found at i:80793 original size:261 final size:264
Alignment explanation
Indices: 80526--81066 Score: 1016
Period size: 265 Copynumber: 2.1 Consensus size: 264
80516 ATATTATATA
80526 TATATATATATATATATATTAATAAACCATATAAAATGTAGTTTATATATAGTTTTTGTATTAAT
1 TATATATATATATATATATTAATAAACCATATAAAATGTAGTTTATATATAGTTTTTGTATTAAT
*
80591 AAACTATGTAGTGTATATAT-AAC-TATATATTAATAAACTATAAACTATATAGTTTATATTAAT
66 AAACTATGTAGTGTATATATAAACATATATATTAATAAACTATAAAATATATAGTTTATATTAAT
*
80654 AAA-CATATAGTTTATATATAGTATATAATATAGTTTATATATAGTTCATATATACACTACATAG
131 AAACCATATAGTTTATATATAGTATATAATATAGTTTATATATAGTTCATATATACACTACATAA
* *
80718 TTTATATACAATGTATAAAATTATAAATATGAACTATATAGTTTATATATATTATATTAATATAT
196 TTTATATACAATATATAAAATTATAAATATAAACTATATAGTTTATATATATTATATTAATATAT
80783 ACTT
261 ACTT
80787 TATATATATATATATATATTAATAAACCATATAAAATGTAGTTTATATATAGTTTTTGTATTAAT
1 TATATATATATATATATATTAATAAACCATATAAAATGTAGTTTATATATAGTTTTTGTATTAAT
80852 AAACTATGTAGTGTATATATAAACTATATATATTAATAAACTATAAAATATATAGTTTATATTAA
66 AAACTATGTAGTGTATATATAAAC-ATATATATTAATAAACTATAAAATATATAGTTTATATTAA
80917 TAAACCATATAGTTTATATATAGTATATAATATAGTTTATATATAGTTCATATATACACTACATA
130 TAAACCATATAGTTTATATATAGTATATAATATAGTTTATATATAGTTCATATATACACTACATA
80982 ATTTATATACAATATATAAAATTATAAATATAAACTATATAGTTTATATATATTATATTAATATA
195 ATTTATATACAATATATAAAATTATAAATATAAACTATATAGTTTATATATATTATATTAATATA
81047 TACTT
260 TACTT
81052 TATATATATATATAT
1 TATATATATATATAT
81067 TATAATTGTT
Statistics
Matches: 272, Mismatches: 4, Indels: 4
0.97 0.01 0.01
Matches are distributed among these distances:
261 85 0.31
262 3 0.01
264 42 0.15
265 142 0.52
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.44
Consensus pattern (264 bp):
TATATATATATATATATATTAATAAACCATATAAAATGTAGTTTATATATAGTTTTTGTATTAAT
AAACTATGTAGTGTATATATAAACATATATATTAATAAACTATAAAATATATAGTTTATATTAAT
AAACCATATAGTTTATATATAGTATATAATATAGTTTATATATAGTTCATATATACACTACATAA
TTTATATACAATATATAAAATTATAAATATAAACTATATAGTTTATATATATTATATTAATATAT
ACTT
Found at i:80936 original size:33 final size:33
Alignment explanation
Indices: 80825--80945 Score: 88
Period size: 37 Copynumber: 3.6 Consensus size: 33
80815 ATATAAAATG
* * *
80825 TAGTTTATATATAGTTTTTGTATTAATAAACTATG
1 TAGTTTATATATAG--TTTATATTAATAAACCATA
* *
80860 TAGTGTATATATAAACTATATATATTAATAAA-C-TA
1 TAGT-T-TATATATAGT-T-TATATTAATAAACCATA
**
80895 TA--AAATATATAGTTTATATTAATAAACCATA
1 TAGTTTATATATAGTTTATATTAATAAACCATA
*
80926 TAGTTTATATATAGTATATA
1 TAGTTTATATATAGTTTATA
80946 ATATAGTTTA
Statistics
Matches: 66, Mismatches: 12, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
29 12 0.18
30 2 0.03
31 11 0.17
33 13 0.20
35 8 0.12
36 2 0.03
37 18 0.27
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.45
Consensus pattern (33 bp):
TAGTTTATATATAGTTTATATTAATAAACCATA
Found at i:80939 original size:11 final size:11
Alignment explanation
Indices: 80923--80972 Score: 73
Period size: 11 Copynumber: 4.5 Consensus size: 11
80913 TTAATAAACC
80923 ATATAGTTTAT
1 ATATAGTTTAT
*
80934 ATATAGTATAT
1 ATATAGTTTAT
80945 AATATAGTTTAT
1 -ATATAGTTTAT
*
80957 ATATAGTTCAT
1 ATATAGTTTAT
80968 ATATA
1 ATATA
80973 CACTACATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
11 25 0.71
12 10 0.29
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (11 bp):
ATATAGTTTAT
Found at i:80953 original size:23 final size:23
Alignment explanation
Indices: 80901--80963 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
80891 ACTATAAAAT
* *
80901 ATATAGTTTATAT-TAATAAACC
1 ATATAGTTTATATATAGTAAACA
* *
80923 ATATAGTTTATATATAGTATATA
1 ATATAGTTTATATATAGTAAACA
80946 ATATAGTTTATATATAGT
1 ATATAGTTTATATATAGT
80964 TCATATATAC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
22 13 0.36
23 23 0.64
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (23 bp):
ATATAGTTTATATATAGTAAACA
Found at i:81033 original size:26 final size:25
Alignment explanation
Indices: 81004--81065 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 25
80994 TATATAAAAT
* *
81004 TATAAATATAAACTATATAGTTTATA
1 TATATATATAAA-TATATACTTTATA
*
81030 TATATTATATTAATATATACTTTATA
1 TATA-TATATAAATATATACTTTATA
81056 TATATATATA
1 TATATATATA
81066 TTATAATTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 5 0.16
26 20 0.65
27 6 0.19
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (25 bp):
TATATATATAAATATATACTTTATA
Found at i:81047 original size:15 final size:17
Alignment explanation
Indices: 80931--81070 Score: 65
Period size: 18 Copynumber: 8.0 Consensus size: 17
80921 CCATATAGTT
*
80931 TATATATAGTATATAATA
1 TATATATA-TATATTATA
*
80949 TAGTTTATATATAGTTCATA
1 TA-TATATATATA-TT-ATA
* *
80969 TATACACTACATAATT-TA
1 TATATA-TATAT-ATTATA
* * *
80987 TATACA-ATATATAAAA
1 TATATATATATATTATA
* * *
81003 TTATAAATATAAACTATA
1 -TATATATATATATTATA
*
81021 TAGTTTATATATATTATA
1 TA-TATATATATATTATA
81039 T-TA-ATATATACTT-TA
1 TATATATATATA-TTATA
81054 TATATATATATATTATA
1 TATATATATATATTATA
81071 ATTGTTTTAA
Statistics
Matches: 91, Mismatches: 18, Indels: 27
0.67 0.13 0.20
Matches are distributed among these distances:
15 12 0.13
16 11 0.12
17 16 0.18
18 32 0.35
19 8 0.09
20 11 0.12
21 1 0.01
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (17 bp):
TATATATATATATTATA
Found at i:81048 original size:17 final size:15
Alignment explanation
Indices: 81026--81070 Score: 56
Period size: 17 Copynumber: 2.9 Consensus size: 15
81016 CTATATAGTT
81026 TATATATATTATAT-
1 TATATATATTATATA
81040 TAATATATACTTTATATA
1 T-ATATATA--TTATATA
81058 TATATATATTATA
1 TATATATATTATA
81071 ATTGTTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 1 0.04
15 12 0.44
17 13 0.48
18 1 0.04
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (15 bp):
TATATATATTATATA
Found at i:81079 original size:26 final size:26
Alignment explanation
Indices: 81017--81068 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
81007 AAATATAAAC
*
81017 TATATAGTTTATATATATTATATTAA
1 TATATACTTTATATATATTATATTAA
81043 TATATACTTTATATATATATATATTA
1 TATATACTTTATATATAT-TATATTA
81069 TAATTGTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (26 bp):
TATATACTTTATATATATTATATTAA
Found at i:85150 original size:18 final size:18
Alignment explanation
Indices: 85129--85175 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
85119 TTATTAAAAT
*
85129 TATTAAATA-GTATTATAA
1 TATTAAATATATATTAT-A
*
85147 TATTATAATATATATTATT
1 TATTA-AATATATATTATA
85166 TATTAAATAT
1 TATTAAATAT
85176 TATAAGCCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 10 0.40
19 9 0.36
20 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
TATTAAATATATATTATA
Done.