Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000285.1 Hibiscus syriacus cultivar Beakdansim tig00000527_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105593

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
728--854
32
3.9
32
81
8
132
29
15
3
51
1.62
1569--1638
5
13.8
5
76
8
61
14
4
4
77
1.08
12562--12600
21
1.9
20
84
5
51
30
15
20
33
1.94
15667--15702
2
18.0
2
100
0
72
50
0
0
50
1.00
24101--24164
27
2.4
27
84
7
87
56
0
4
39
1.20
29024--29062
20
2.0
20
89
0
60
38
5
23
33
1.77
31579--31621
16
2.4
18
85
14
63
48
0
0
51
1.00
32819--32893
35
2.1
35
97
0
141
33
28
29
9
1.88
32975--33061
24
3.7
23
81
4
93
39
18
14
27
1.90
32971--33061
47
1.9
48
81
2
112
38
18
15
27
1.91
35552--35641
45
2.0
45
86
0
126
34
24
20
21
1.96
36316--36370
28
2.0
28
92
0
92
47
1
43
7
1.41
37816--37890
35
2.1
35
97
0
141
33
28
29
9
1.88
37971--38057
24
3.7
23
81
4
93
39
18
14
27
1.90
37967--38057
47
1.9
48
81
2
112
38
18
15
27
1.91
40547--40636
45
2.0
45
86
0
126
34
24
20
21
1.96
41311--41365
28
2.0
28
92
0
92
47
1
43
7
1.41
45244--45569
131
2.5
130
79
6
336
42
14
8
34
1.77
47758--48665
112
8.2
112
86
2
1166
28
15
24
31
1.95
47758--48659
334
2.7
335
88
2
1280
28
15
24
31
1.96
51651--52669
112
9.1
112
85
1
1200
29
15
23
31
1.95
55040--55501
112
4.1
111
84
3
579
28
14
24
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61573--61931
131
2.7
131
79
2
355
41
15
10
32
1.81
83586--83640
26
2.1
26
83
10
67
72
5
10
10
1.26
83718--83839
3
40.7
3
74
11
99
32
1
0
65
1.02
83717--83839
32
3.9
31
73
19
105
32
1
0
65
1.02
83734--83841
45
2.3
46
83
10
123
33
1
0
64
1.04
85349--85619
136
2.0
136
86
5
375
39
6
8
46
1.59
86149--86205
28
2.1
28
87
6
82
33
5
0
61
1.18
96581--96628
20
2.4
20
92
0
78
35
14
25
25
1.94
96970--97021
22
2.4
22
90
0
77
34
13
11
40
1.81
97221--97669
117
3.8
119
86
7
578
38
16
18
26
1.92
97221--97740
118
4.3
121
84
8
593
38
16
18
26
1.92
98107--98221
3
39.7
3
75
16
109
32
0
0
66
0.97
99697--99934
129
1.8
128
83
8
309
37
8
8
45
1.65
101488--101574
30
2.8
31
80
11
99
32
2
5
59
1.33
102292--102339
22
2.1
23
96
3
89
41
4
0
54
1.20
102357--102476
62
2.0
61
94
1
213
26
12
29
31
1.93

Tables:   1

The End!