Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002850.1 Hibiscus syriacus cultivar Beakdansim tig00005863_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62605

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8666--8692
14
1.9
14
100
0
54
7
22
0
70
1.12
12110--12197
8
11.5
8
73
13
62
76
0
13
10
1.03
12110--12213
13
7.1
16
71
23
52
75
0
14
9
1.03
12131--12209
29
2.6
30
80
13
83
78
0
13
7
0.95
12135--12209
12
6.3
12
79
16
61
80
0
13
6
0.91
12122--12210
20
4.4
20
77
20
89
78
0
13
7
0.95
13121--13849
105
6.9
105
92
0
1170
37
18
22
21
1.94
17259--17341
23
3.6
23
95
0
139
19
28
27
24
1.98
32622--32671
18
2.8
19
79
11
61
74
4
6
16
1.17
32683--32814
33
4.2
33
78
15
102
46
8
4
40
1.54
32699--33097
38
11.2
35
73
16
213
45
7
4
43
1.50
32840--33111
76
3.6
73
78
12
236
44
6
5
44
1.52
33686--34308
248
2.5
244
83
4
755
25
19
23
31
1.98
33819--34304
164
2.9
163
88
4
679
25
19
23
31
1.98
40753--40795
18
2.4
18
80
7
52
72
4
6
16
1.24
40807--40938
33
4.2
33
78
15
102
46
8
4
40
1.54
40823--41221
38
11.2
35
74
16
222
45
7
4
43
1.50
40946--41221
75
3.7
74
77
13
246
45
6
4
44
1.48
40823--41221
75
5.6
75
73
16
242
45
7
4
43
1.50
41728--41778
19
2.7
19
93
0
93
54
0
7
37
1.29
41728--41785
19
3.1
18
85
9
80
55
1
6
36
1.37
42274--42325
12
4.4
12
75
20
56
65
1
0
32
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42274--42327
23
2.4
23
81
9
67
64
1
0
33
1.04
44771--44859
44
2.0
44
95
0
160
29
5
15
49
1.67

Tables:   1

The End!