Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002851.1 Hibiscus syriacus cultivar Beakdansim tig00005866_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89199

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1171--1608
232
1.9
232
81
7
528
39
12
9
38
1.76
3225--3269
22
2.0
23
82
4
56
33
15
11
40
1.83
6980--7056
38
2.0
38
97
0
145
35
5
20
38
1.75
16743--16804
29
2.1
29
87
0
88
30
16
20
32
1.95
18863--18912
18
2.6
20
81
6
59
32
14
24
30
1.94
28078--28128
14
3.6
14
75
15
50
33
23
17
25
1.96
30166--30229
20
3.1
21
71
6
51
29
15
23
31
1.95
32682--32720
17
2.3
18
86
8
55
48
2
15
33
1.58
34113--34146
18
1.9
18
88
5
52
64
0
0
35
0.94
41614--41669
14
4.3
14
76
17
66
10
12
23
53
1.69
41615--41676
24
2.6
24
89
0
97
11
11
22
54
1.67
41615--41683
24
2.9
23
86
2
84
13
11
20
55
1.68
42414--42488
10
7.7
10
69
21
61
9
12
21
57
1.62
42420--42484
16
4.1
16
95
0
121
7
12
23
56
1.61
42554--42586
16
2.1
16
100
0
66
6
12
24
57
1.57
44387--44430
23
2.0
23
81
4
54
38
15
15
29
1.89
47371--47411
20
2.0
20
90
0
64
26
17
9
46
1.79
49352--49413
19
3.2
20
77
15
67
32
3
1
62
1.20
49874--49908
3
11.7
3
93
0
61
68
0
28
2
1.04
55844--55888
17
2.6
17
75
0
54
42
0
0
57
0.98
58427--58465
15
2.6
16
84
12
55
61
7
12
17
1.54
59135--59634
252
2.0
245
94
4
887
27
23
16
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59619--59671
26
2.1
25
93
6
90
30
24
11
33
1.90
62010--62039
11
2.6
11
94
5
51
0
13
0
86
0.57
66600--66745
25
5.9
25
79
10
140
44
1
15
39
1.55
66595--66689
13
7.5
14
70
20
66
44
1
13
41
1.51
72101--72157
3
19.0
3
92
0
69
33
42
0
24
1.55
73221--73259
21
1.9
20
85
15
53
53
2
2
41
1.28
74256--74298
17
2.5
17
88
0
68
20
4
41
32
1.73
77299--77354
20
2.7
22
84
13
75
60
1
3
33
1.24
78213--78615
117
3.7
107
81
8
438
25
20
15
39
1.91
79050--79165
36
3.2
36
71
2
115
40
15
18
25
1.90
79013--79259
73
3.4
73
86
0
314
36
14
19
28
1.92
79013--79185
36
4.7
37
66
2
98
37
13
18
30
1.90
79245--79302
28
2.0
29
90
3
91
43
15
12
29
1.83
79274--79342
36
1.9
36
90
0
111
39
14
21
24
1.91
79320--79354
15
2.3
15
100
0
70
34
20
25
20
1.96
79275--79393
51
2.3
51
86
1
166
39
13
21
26
1.90
79335--79473
36
3.9
36
85
0
197
41
12
21
24
1.87
79338--79472
72
1.9
72
92
0
225
42
11
22
23
1.86
79464--79755
40
7.4
40
86
5
425
41
11
15
31
1.83
84900--84940
6
6.5
6
91
8
64
53
14
17
14
1.73
89132--89190
20
3.0
20
75
22
61
59
0
3
37
1.14

Tables:   1

The End!