genome.fa.s2852.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002852.1 Hibiscus syriacus cultivar Beakdansim tig00005868_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98345

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1022--1118	32	3.2	32	74	15	107	22	17	15	44	1.86
1027--1113	16	5.8	16	69	13	51	22	17	17	42	1.89
1267--2660	2	708.0	2	65	22	392	46	3	5	44	1.43
1477--1569	7	13.7	7	70	20	56	54	3	7	34	1.45
3551--3681	64	2.0	64	92	0	217	28	22	15	33	1.94
18727--18827	52	1.9	52	82	7	125	42	0	10	45	1.46
20621--20676	28	2.0	28	82	3	69	42	5	1	50	1.35
20704--20802	30	3.5	28	74	19	89	42	7	0	50	1.29
20719--20798	29	2.8	29	75	16	94	42	7	0	50	1.30
20719--20799	27	2.9	27	82	8	108	41	7	0	50	1.30
21083--21162	41	1.9	42	92	2	135	26	5	23	45	1.73
23432--23466	2	17.5	2	100	0	70	51	0	0	48	1.00
23426--23485	12	4.8	12	78	11	57	61	0	0	38	0.96
24612--24873	84	3.2	82	80	5	269	25	22	24	28	1.99
25053--26251	106	11.4	106	90	1	1790	22	18	25	33	1.97
30176--30218	2	21.5	2	100	0	86	51	0	0	48	1.00
32001--32075	37	2.0	38	82	10	93	50	4	0	45	1.20
34122--34201	29	2.8	29	88	3	117	22	12	16	48	1.79
34573--34852	41	6.8	41	82	2	285	27	20	17	34	1.95
34607--34852	82	3.0	82	83	1	314	27	20	17	34	1.95
38547--38808	43	6.1	43	79	7	248	25	19	20	35	1.96
38548--38815	87	3.1	86	81	6	276	25	18	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41651--41677	4	6.8	4	100	0	54	22	0	0	77	0.76
43277--43318	20	2.1	20	95	0	75	45	30	0	23	1.53
45462--45561	48	2.1	48	96	0	182	29	16	6	49	1.69
49100--49138	17	2.3	17	86	0	51	69	0	0	30	0.89
51266--51377	48	2.3	48	96	0	206	45	12	16	25	1.83
51953--51991	20	2.0	19	90	5	60	38	30	15	15	1.88
52905--52971	31	2.2	31	86	5	91	43	5	26	23	1.77
56085--56146	30	2.0	31	90	3	99	45	6	27	20	1.76
61537--61736	29	7.0	29	89	2	269	36	2	16	46	1.58
61536--61746	57	3.7	57	84	3	255	35	1	15	46	1.57
69099--69144	18	2.6	18	89	0	74	17	47	21	13	1.81
69146--69348	29	7.0	29	86	5	257	34	1	15	47	1.56
73348--73407	30	2.0	30	93	6	104	40	13	11	35	1.81
73542--73577	2	18.0	2	100	0	72	50	0	0	50	1.00
75372--75446	21	3.6	21	78	8	66	36	16	12	36	1.85
75377--75437	21	3.0	20	79	9	70	39	14	11	34	1.82
80627--80674	3	16.0	3	100	0	96	66	0	0	33	0.92
80676--80722	3	15.7	3	100	0	94	34	0	0	65	0.93
80856--80921	29	2.3	29	84	5	80	33	19	10	36	1.86
81487--81511	11	2.3	11	100	0	50	72	0	0	28	0.86
84654--84689	2	18.0	2	100	0	72	50	0	0	50	1.00
86301--86327	12	2.2	12	100	0	54	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86850--86932	33	2.5	34	90	5	118	27	13	21	37	1.91
86866--86932	33	2.0	33	97	0	125	26	10	22	40	1.86
86984--87042	8	6.8	8	78	21	57	69	0	0	30	0.89
86986--87042	3	19.3	3	76	20	50	68	0	0	31	0.90
87404--88481	84	13.0	84	78	6	1075	25	19	24	31	1.98
87365--88486	248	4.5	249	90	2	1666	25	19	24	31	1.98
88588--89243	110	6.0	110	90	0	987	24	18	22	34	1.96
92961--92995	2	17.5	2	100	0	70	51	0	0	48	1.00
93032--93075	17	2.7	16	83	13	54	72	0	4	22	1.02
93032--93075	4	10.8	4	81	13	54	72	0	4	22	1.02
93032--93075	13	3.6	12	82	11	54	72	0	4	22	1.02
93032--93075	9	5.4	8	84	10	54	72	0	4	22	1.02
95723--95795	15	5.1	15	69	15	55	54	2	1	41	1.23
95693--95810	42	2.8	42	97	1	220	52	5	2	39	1.37
95742--95809	21	3.2	21	63	8	57	52	5	2	38	1.41
97154--97190	17	2.2	17	95	0	65	32	24	10	32	1.90

Tables:   1

The End!