genome.fa.s2854.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002854.1 Hibiscus syriacus cultivar Beakdansim tig00005875_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158102

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4870--4961	46	2.0	46	93	0	157	26	18	15	40	1.90
16280--16337	30	1.9	30	89	0	89	20	22	17	39	1.92
16716--16819	25	4.2	25	74	9	97	43	0	20	35	1.58
16713--16819	24	4.4	23	75	12	81	42	0	19	37	1.58
17292--17490	106	1.9	106	85	5	276	33	15	15	36	1.89
20228--20533	154	2.0	154	96	0	567	34	15	14	36	1.87
21900--21936	14	2.6	14	95	0	65	54	2	10	32	1.49
32196--32260	29	2.2	29	86	0	94	29	12	18	40	1.87
38509--38537	3	9.7	3	100	0	58	68	0	0	31	0.89
39780--39837	29	2.0	30	93	3	100	50	3	1	44	1.29
39771--39837	29	2.3	28	87	5	89	47	4	1	46	1.31
39780--39845	29	2.2	29	89	5	96	50	3	3	43	1.33
39807--40047	38	6.2	38	81	12	251	45	5	3	45	1.44
40073--40135	10	6.5	10	75	12	60	55	0	3	41	1.16
40101--40136	18	2.0	18	94	0	63	52	0	5	41	1.24
40073--40126	2	28.0	2	77	7	58	53	0	3	42	1.18
42229--42299	36	2.0	36	83	5	90	26	29	22	21	1.99
45748--46101	174	2.0	174	98	0	681	25	15	11	46	1.80
52851--53557	354	2.0	352	91	2	1136	38	9	13	38	1.77
54412--54438	14	1.9	14	100	0	54	22	7	3	66	1.33
55899--55976	31	2.5	31	85	0	93	52	11	11	24	1.70
80676--80740	32	2.0	32	96	0	121	32	21	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81002--81065	27	2.4	27	100	0	128	53	3	0	43	1.16
81771--81828	30	1.9	30	86	6	82	43	8	13	34	1.75
82776--82849	30	2.5	31	82	6	98	35	4	21	39	1.73
83052--83096	9	5.0	9	83	0	63	26	8	20	44	1.80
83048--83096	18	2.7	18	84	12	73	28	8	18	44	1.78
83052--83105	27	2.0	27	88	0	81	25	7	20	46	1.77
83053--83105	9	5.9	9	78	8	54	26	5	20	47	1.72
83995--84096	36	2.9	36	85	7	138	42	10	18	28	1.84
84331--84433	21	4.9	21	75	4	91	29	12	20	37	1.89
88391--88435	24	1.9	23	81	4	54	35	20	6	37	1.79
88920--88947	14	2.0	14	100	0	56	42	28	0	28	1.56
90173--90334	64	2.5	62	78	10	166	25	22	19	32	1.97
94127--94229	15	6.5	15	78	15	109	45	0	2	51	1.16
94209--94702	32	15.4	31	70	21	260	34	0	12	53	1.39
94232--94274	22	2.0	22	95	0	77	37	0	11	51	1.39
94127--94284	69	2.3	67	87	6	221	43	0	5	51	1.25
94209--94719	54	9.1	54	77	16	515	34	0	12	53	1.39
94284--94328	22	2.0	22	100	0	90	37	0	13	48	1.42
94411--94467	18	3.4	18	67	18	59	31	0	14	54	1.40
94387--94702	64	4.8	64	76	18	337	34	0	12	53	1.39
94254--94719	144	3.5	134	86	10	640	34	0	12	53	1.40
94209--94814	198	3.1	199	89	6	815	34	0	12	53	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94564--94606	22	2.0	22	95	0	77	37	0	11	51	1.39
94452--94814	54	6.6	55	68	16	205	34	0	12	53	1.39
94970--95051	37	2.2	37	95	0	146	15	28	21	34	1.95
98097--98244	67	2.2	67	89	2	217	27	28	25	18	1.98
98248--98280	17	1.9	17	93	0	57	72	3	24	0	0.98
98548--98619	29	2.5	29	95	0	126	40	9	11	38	1.74
98788--99091	149	2.0	149	98	0	590	27	16	20	36	1.94
99070--99114	23	2.0	23	86	0	63	20	24	28	26	1.99
99889--99954	23	2.9	23	84	2	80	25	9	3	62	1.40
106402--106448	20	2.5	19	77	16	53	34	0	0	65	0.93
110319--110487	58	2.9	59	86	4	225	23	33	20	23	1.97
111634--111770	59	2.3	60	73	15	140	33	17	13	35	1.89
116712--116767	23	2.4	23	96	0	103	33	10	19	35	1.87
120004--120161	21	7.8	20	72	7	86	38	25	17	18	1.92
120128--120437	20	15.5	20	88	1	343	37	24	17	20	1.94
121120--121166	24	2.0	24	87	8	69	25	14	21	38	1.92
123610--123817	19	11.7	19	80	15	257	45	17	21	15	1.85
123596--123811	33	6.2	34	84	12	278	46	18	21	14	1.84
123638--123817	52	3.4	51	77	13	184	45	16	22	15	1.85
123610--123817	71	2.9	71	94	2	355	45	17	21	15	1.85
123826--123871	20	2.3	20	92	3	76	17	21	15	45	1.85
123835--123876	19	2.2	20	86	4	59	19	23	16	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123978--124013	13	2.6	14	86	4	56	47	22	0	30	1.52
125757--125822	19	3.4	19	87	6	89	10	16	27	45	1.80
125870--126338	93	5.1	93	98	0	904	46	19	12	21	1.83
128044--128133	14	5.7	14	69	23	63	44	22	23	10	1.82
128036--128150	33	3.5	33	97	0	221	46	20	22	10	1.80
128058--128155	19	5.7	19	69	22	90	44	21	22	11	1.83
128167--128223	14	3.7	14	75	20	60	8	24	22	43	1.81
128151--128231	33	2.5	33	95	0	144	8	22	22	46	1.78
128208--128283	21	3.7	21	83	3	109	11	25	17	46	1.82
128207--128284	41	1.9	41	97	0	147	12	25	16	44	1.83
128363--128433	33	2.2	33	92	0	115	47	18	22	11	1.80
128615--128669	22	2.5	22	81	0	74	20	16	40	23	1.91
128816--128969	20	7.7	20	81	7	168	18	18	26	37	1.93
128815--128969	40	3.8	40	82	4	186	18	18	26	37	1.93
128956--129038	21	4.0	21	73	6	78	25	16	24	33	1.96
128936--129034	42	2.4	43	77	11	100	21	18	23	37	1.94
136028--136065	16	2.4	16	90	0	58	10	26	36	26	1.89
137220--137246	5	5.4	5	100	0	54	62	18	0	18	1.32
145759--145849	44	2.1	44	91	4	148	34	16	19	29	1.94
147367--147395	2	14.5	2	100	0	58	48	0	0	51	1.00
150160--150288	39	3.3	39	92	0	213	37	28	6	27	1.81
153016--153058	13	3.3	12	81	12	50	0	27	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153255--153289	12	2.9	12	91	0	61	2	25	5	65	1.28
153636--153881	126	2.0	126	85	1	332	22	26	12	38	1.90
153647--153910	126	2.1	126	82	4	309	22	26	12	39	1.89

Tables:   1

The End!